Wall clock time and date at job start Mon Mar 30 2020 04:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00330 * 2 1 4 4 H 1.48503 * 109.47229 * 270.00258 * 3 2 1 5 5 H 1.48503 * 109.47097 * 30.00248 * 3 2 1 6 6 H 1.48496 * 109.47206 * 150.00011 * 3 2 1 7 7 C 1.37880 * 119.99540 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00463 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99637 * 179.97438 * 7 2 1 10 10 H 1.08999 * 109.46969 * 60.00025 * 9 7 2 11 11 N 1.46902 * 109.47301 * 300.00247 * 9 7 2 12 12 C 1.50700 * 109.47076 * 179.97438 * 9 7 2 13 13 C 1.38756 * 119.75106 * 79.99945 * 12 9 7 14 14 C 1.37915 * 120.67589 * 179.97438 * 13 12 9 15 15 C 1.38916 * 119.81870 * 359.97438 * 14 13 12 16 16 O 1.35007 * 120.79555 * 180.02562 * 15 14 13 17 17 C 1.34198 * 121.47328 * 180.02562 * 16 15 14 18 18 O 1.21770 * 119.15459 * 179.97438 * 17 16 15 19 19 C 1.41179 * 121.68037 * 359.95356 * 17 16 15 20 20 C 1.35702 * 119.80270 * 0.02562 * 19 17 16 21 21 C 1.40578 * 119.34094 * 0.02562 * 15 14 13 22 22 C 1.36656 * 119.75456 * 259.72085 * 12 9 7 23 23 H 0.97003 * 119.99655 * 359.97438 * 1 2 3 24 24 H 1.00902 * 110.99473 * 299.99752 * 11 9 7 25 25 H 1.00896 * 111.00336 * 63.95440 * 11 9 7 26 26 H 1.08003 * 119.66414 * 0.02959 * 13 12 9 27 27 H 1.07999 * 120.09427 * 180.02562 * 14 13 12 28 28 H 1.08003 * 120.09663 * 179.97438 * 19 17 16 29 29 H 1.07998 * 120.91497 * 180.02562 * 20 19 17 30 30 H 1.07994 * 120.14475 * 0.02916 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 1 3.8751 -0.6805 0.8888 11 7 4.0007 -0.5013 -1.2006 12 6 4.0138 -2.6150 -0.0010 13 6 4.0456 -3.3341 -1.1872 14 6 4.5020 -4.6354 -1.2091 15 6 4.9357 -5.2352 -0.0335 16 8 5.3869 -6.5076 -0.0324 17 6 5.8085 -7.1005 1.0953 18 8 6.2066 -8.2503 1.0479 19 6 5.8026 -6.4250 2.3350 20 6 5.3616 -5.1435 2.4027 21 6 4.9020 -4.5034 1.1663 22 6 4.4399 -3.1836 1.1663 23 1 -0.4850 0.8401 0.0004 24 1 3.6769 -0.9587 -2.0396 25 1 3.7314 0.4710 -1.1917 26 1 3.7103 -2.8699 -2.1029 27 1 4.5231 -5.1863 -2.1378 28 1 6.1474 -6.9271 3.2269 29 1 5.3497 -4.6096 3.3414 30 1 4.4165 -2.6173 2.0856 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309228189.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:23 Heat of formation + Delta-G solvation = -24.803284 kcal Electronic energy + Delta-G solvation = -16787.174751 eV Core-core repulsion = 13934.179054 eV Total energy + Delta-G solvation = -2852.995698 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.65449 -38.91610 -37.29093 -35.18685 -34.08852 -31.99804 -30.54863 -29.31599 -26.36461 -24.44443 -24.14488 -22.64033 -21.30732 -18.94171 -17.42943 -17.37125 -17.02074 -16.56562 -15.77611 -15.22128 -14.68114 -14.58995 -13.89942 -13.62643 -13.56156 -13.21875 -12.74632 -12.67904 -12.26882 -12.07151 -11.65528 -11.17669 -10.95876 -10.88163 -10.35289 -10.26561 -10.15245 -9.71851 -8.93270 -8.54346 -8.15414 -7.64462 -6.37969 -4.43735 0.36604 1.37591 1.79068 2.59740 3.01581 3.02438 3.15388 3.17804 4.01221 4.09181 4.25406 4.47466 4.55372 4.90500 5.11546 5.19285 5.46435 5.49555 5.66670 5.71573 5.84381 5.91282 6.09132 6.25538 6.44608 6.59971 6.89616 7.08669 7.28787 7.31912 7.60934 7.87304 8.08240 8.29834 8.68110 9.19782 10.74244 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.046552 B = 0.005487 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.329314 B = 5101.505326 C = 5231.887585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.075 3.925 3 Si 0.873 3.127 4 H -0.274 1.274 5 H -0.289 1.289 6 H -0.259 1.259 7 C -0.553 4.553 8 H 0.078 0.922 9 C 0.207 3.793 10 H 0.054 0.946 11 N -0.850 5.850 12 C -0.039 4.039 13 C -0.042 4.042 14 C -0.139 4.139 15 C 0.123 3.877 16 O -0.272 6.272 17 C 0.509 3.491 18 O -0.483 6.483 19 C -0.269 4.269 20 C 0.017 3.983 21 C -0.164 4.164 22 C -0.059 4.059 23 H 0.268 0.732 24 H 0.331 0.669 25 H 0.320 0.680 26 H 0.138 0.862 27 H 0.137 0.863 28 H 0.158 0.842 29 H 0.150 0.850 30 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.107 -4.619 2.091 10.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.129 4.129 3 Si 0.701 3.299 4 H -0.200 1.200 5 H -0.216 1.216 6 H -0.183 1.183 7 C -0.592 4.592 8 H 0.096 0.904 9 C 0.098 3.902 10 H 0.071 0.929 11 N -0.383 5.383 12 C -0.040 4.040 13 C -0.061 4.061 14 C -0.157 4.157 15 C 0.079 3.921 16 O -0.183 6.183 17 C 0.359 3.641 18 O -0.374 6.374 19 C -0.288 4.288 20 C -0.002 4.002 21 C -0.165 4.165 22 C -0.077 4.077 23 H 0.078 0.922 24 H 0.144 0.856 25 H 0.137 0.863 26 H 0.156 0.844 27 H 0.155 0.845 28 H 0.176 0.824 29 H 0.168 0.832 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 9.859 -5.328 2.177 11.416 hybrid contribution -0.850 1.160 0.025 1.439 sum 9.009 -4.168 2.202 10.167 Atomic orbital electron populations 1.69888 1.06251 1.27426 1.48560 1.25034 0.94849 0.99077 0.93957 0.87012 0.80329 0.83791 0.78741 1.20009 1.21616 1.18339 1.21590 0.89316 0.95100 1.53213 0.90432 1.18517 0.93857 0.86760 0.91065 0.92856 1.59735 1.66916 1.05877 1.05822 1.19843 0.94292 0.97758 0.92088 1.21073 0.94117 0.91710 0.99162 1.20502 1.03470 0.95693 0.96031 1.19021 0.97677 0.80701 0.94703 1.83491 1.68745 1.26782 1.39332 1.19225 0.76092 0.86315 0.82485 1.90935 1.44773 1.16284 1.85362 1.22472 1.10702 0.97062 0.98537 1.22912 0.86643 0.93308 0.97291 1.19054 1.08707 0.96435 0.92291 1.20755 0.95783 0.92047 0.99115 0.92171 0.85611 0.86339 0.84416 0.84476 0.82433 0.83186 0.84657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.95 13.96 55.43 0.77 -24.18 16 2 C 0.08 1.96 5.47 -17.82 -0.10 1.87 16 3 Si 0.87 19.23 24.61 -169.99 -4.18 15.05 16 4 H -0.27 -5.80 7.01 56.52 0.40 -5.40 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.26 -5.48 6.54 56.52 0.37 -5.11 16 7 C -0.55 -13.82 9.28 -34.44 -0.32 -14.14 16 8 H 0.08 2.16 7.98 -52.49 -0.42 1.74 16 9 C 0.21 4.29 2.47 -70.02 -0.17 4.11 16 10 H 0.05 1.13 7.03 -51.93 -0.36 0.77 16 11 N -0.85 -16.46 8.97 -6.65 -0.06 -16.52 16 12 C -0.04 -0.70 4.86 -105.00 -0.51 -1.21 16 13 C -0.04 -0.68 9.26 -39.51 -0.37 -1.05 16 14 C -0.14 -2.07 10.01 -39.45 -0.39 -2.46 16 15 C 0.12 1.93 6.76 -38.45 -0.26 1.67 16 16 O -0.27 -4.47 9.82 -20.68 -0.20 -4.67 16 17 C 0.51 8.11 7.89 31.85 0.25 8.36 16 18 O -0.48 -8.92 17.91 -19.58 -0.35 -9.27 16 19 C -0.27 -3.32 9.94 -39.37 -0.39 -3.71 16 20 C 0.02 0.20 10.13 -37.11 -0.38 -0.18 16 21 C -0.16 -2.41 5.87 -105.04 -0.62 -3.03 16 22 C -0.06 -0.92 9.39 -39.56 -0.37 -1.29 16 23 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.33 5.97 7.31 -39.29 -0.29 5.68 16 25 H 0.32 6.43 4.30 -39.29 -0.17 6.26 16 26 H 0.14 2.07 6.63 -52.48 -0.35 1.72 16 27 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 28 H 0.16 1.55 8.06 -52.48 -0.42 1.12 16 29 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.14 1.87 8.01 -52.49 -0.42 1.45 16 LS Contribution 261.00 15.07 3.93 3.93 Total: -1.00 -29.58 261.00 -6.16 -35.74 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -2.45 Total: 10.98 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -3.62 Total: -11.07 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.71 Total: -40.70 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.55 Total: -13.94 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.18 Total: 15.05 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.58 -6.16 -35.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309228189.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.938 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds