Wall clock time and date at job start Mon Mar 30 2020 04:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00330 * 2 1 4 4 H 1.48503 * 109.47229 * 270.00258 * 3 2 1 5 5 H 1.48503 * 109.47097 * 30.00248 * 3 2 1 6 6 H 1.48496 * 109.47206 * 150.00011 * 3 2 1 7 7 C 1.37880 * 119.99540 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00463 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99637 * 179.97438 * 7 2 1 10 10 H 1.08999 * 109.46969 * 60.00025 * 9 7 2 11 11 N 1.46902 * 109.47301 * 300.00247 * 9 7 2 12 12 C 1.50700 * 109.47076 * 179.97438 * 9 7 2 13 13 C 1.38756 * 119.75106 * 79.99945 * 12 9 7 14 14 C 1.37915 * 120.67589 * 179.97438 * 13 12 9 15 15 C 1.38916 * 119.81870 * 359.97438 * 14 13 12 16 16 O 1.35007 * 120.79555 * 180.02562 * 15 14 13 17 17 C 1.34198 * 121.47328 * 180.02562 * 16 15 14 18 18 O 1.21770 * 119.15459 * 179.97438 * 17 16 15 19 19 C 1.41179 * 121.68037 * 359.95356 * 17 16 15 20 20 C 1.35702 * 119.80270 * 0.02562 * 19 17 16 21 21 C 1.40578 * 119.34094 * 0.02562 * 15 14 13 22 22 C 1.36656 * 119.75456 * 259.72085 * 12 9 7 23 23 H 0.97003 * 119.99655 * 359.97438 * 1 2 3 24 24 H 1.00902 * 110.99473 * 299.99752 * 11 9 7 25 25 H 1.00896 * 111.00336 * 63.95440 * 11 9 7 26 26 H 1.08003 * 119.66414 * 0.02959 * 13 12 9 27 27 H 1.07999 * 120.09427 * 180.02562 * 14 13 12 28 28 H 1.08003 * 120.09663 * 179.97438 * 19 17 16 29 29 H 1.07998 * 120.91497 * 180.02562 * 20 19 17 30 30 H 1.07994 * 120.14475 * 0.02916 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 1 3.8751 -0.6805 0.8888 11 7 4.0007 -0.5013 -1.2006 12 6 4.0138 -2.6150 -0.0010 13 6 4.0456 -3.3341 -1.1872 14 6 4.5020 -4.6354 -1.2091 15 6 4.9357 -5.2352 -0.0335 16 8 5.3869 -6.5076 -0.0324 17 6 5.8085 -7.1005 1.0953 18 8 6.2066 -8.2503 1.0479 19 6 5.8026 -6.4250 2.3350 20 6 5.3616 -5.1435 2.4027 21 6 4.9020 -4.5034 1.1663 22 6 4.4399 -3.1836 1.1663 23 1 -0.4850 0.8401 0.0004 24 1 3.6769 -0.9587 -2.0396 25 1 3.7314 0.4710 -1.1917 26 1 3.7103 -2.8699 -2.1029 27 1 4.5231 -5.1863 -2.1378 28 1 6.1474 -6.9271 3.2269 29 1 5.3497 -4.6096 3.3414 30 1 4.4165 -2.6173 2.0856 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309228189.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:23 Heat of formation + Delta-G solvation = -44.257952 kcal Electronic energy + Delta-G solvation = -16788.018369 eV Core-core repulsion = 13934.179054 eV Total energy + Delta-G solvation = -2853.839315 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.86359 -40.20151 -38.62134 -36.63014 -35.33076 -33.86213 -31.78103 -30.58921 -28.12941 -25.68902 -25.43950 -23.86529 -22.80718 -20.18547 -19.10925 -18.65274 -18.36049 -17.81992 -17.36991 -16.38958 -16.29651 -15.89727 -15.19873 -14.93368 -14.82613 -14.53976 -14.40775 -13.84974 -13.76371 -13.56128 -13.03201 -12.77264 -12.48166 -12.35357 -11.89698 -11.55927 -11.47009 -11.34303 -10.89366 -9.77583 -9.49310 -9.17426 -8.37390 -6.46879 -0.71950 0.11735 0.62441 1.28839 1.37329 1.39034 1.45461 1.86052 2.23975 2.78419 2.96718 3.14869 3.46070 3.50953 3.79191 4.13967 4.23229 4.30363 4.33648 4.58691 4.69119 4.78417 4.96156 5.03887 5.13718 5.26993 5.37931 5.66111 5.72148 6.05649 6.11706 6.38761 6.41464 6.57968 6.72260 7.20728 8.78434 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.046552 B = 0.005487 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.329314 B = 5101.505326 C = 5231.887585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.019 3.981 3 Si 0.937 3.063 4 H -0.258 1.258 5 H -0.297 1.297 6 H -0.240 1.240 7 C -0.548 4.548 8 H 0.034 0.966 9 C 0.214 3.786 10 H 0.054 0.946 11 N -0.840 5.840 12 C -0.067 4.067 13 C -0.051 4.051 14 C -0.136 4.136 15 C 0.109 3.891 16 O -0.286 6.286 17 C 0.499 3.501 18 O -0.519 6.519 19 C -0.265 4.265 20 C 0.035 3.965 21 C -0.165 4.165 22 C -0.056 4.056 23 H 0.268 0.732 24 H 0.339 0.661 25 H 0.318 0.682 26 H 0.143 0.857 27 H 0.157 0.843 28 H 0.188 0.812 29 H 0.196 0.804 30 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.943 -4.036 3.116 12.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.181 4.181 3 Si 0.762 3.238 4 H -0.183 1.183 5 H -0.225 1.225 6 H -0.164 1.164 7 C -0.587 4.587 8 H 0.053 0.947 9 C 0.105 3.895 10 H 0.072 0.928 11 N -0.373 5.373 12 C -0.068 4.068 13 C -0.069 4.069 14 C -0.154 4.154 15 C 0.066 3.934 16 O -0.198 6.198 17 C 0.352 3.648 18 O -0.412 6.412 19 C -0.284 4.284 20 C 0.017 3.983 21 C -0.166 4.166 22 C -0.075 4.075 23 H 0.077 0.923 24 H 0.152 0.848 25 H 0.134 0.866 26 H 0.160 0.840 27 H 0.174 0.826 28 H 0.205 0.795 29 H 0.213 0.787 30 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 11.718 -4.751 3.187 13.040 hybrid contribution -1.443 0.857 -0.319 1.708 sum 10.275 -3.894 2.868 11.357 Atomic orbital electron populations 1.70051 1.08312 1.28339 1.51036 1.25883 0.95453 1.03001 0.93721 0.85977 0.79400 0.78789 0.79642 1.18310 1.22482 1.16364 1.21839 0.91855 0.93257 1.51784 0.94721 1.18341 0.90790 0.88892 0.91507 0.92775 1.59699 1.66265 1.05628 1.05737 1.19771 0.96478 0.96772 0.93756 1.21127 0.94549 0.92223 0.99022 1.20680 1.02559 0.95268 0.96904 1.19280 0.97961 0.80622 0.95586 1.83439 1.68809 1.27171 1.40339 1.19867 0.75396 0.86173 0.83335 1.90914 1.46593 1.17854 1.85846 1.22630 1.10862 0.97290 0.97632 1.23274 0.84658 0.92835 0.97562 1.19304 1.07959 0.96002 0.93348 1.20955 0.94881 0.92502 0.99128 0.92290 0.84798 0.86626 0.83956 0.82573 0.79489 0.78706 0.82592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.24 13.96 21.45 0.30 -53.94 16 2 C 0.02 0.99 5.47 84.65 0.46 1.45 16 3 Si 0.94 39.02 24.61 68.60 1.69 40.71 16 4 H -0.26 -10.01 7.01 99.48 0.70 -9.31 16 5 H -0.30 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.24 -9.20 6.54 99.48 0.65 -8.55 16 7 C -0.55 -27.63 9.28 25.60 0.24 -27.39 16 8 H 0.03 2.00 7.98 -2.91 -0.02 1.97 16 9 C 0.21 8.60 2.47 43.42 0.11 8.71 16 10 H 0.05 2.17 7.03 -2.39 -0.02 2.15 16 11 N -0.84 -30.93 8.97 -174.95 -1.57 -32.50 16 12 C -0.07 -2.32 4.86 -20.11 -0.10 -2.42 16 13 C -0.05 -1.61 9.26 22.32 0.21 -1.40 16 14 C -0.14 -3.91 10.01 22.36 0.22 -3.69 16 15 C 0.11 3.27 6.76 23.00 0.16 3.43 16 16 O -0.29 -9.12 9.82 15.09 0.15 -8.98 16 17 C 0.50 15.25 7.89 68.54 0.54 15.79 16 18 O -0.52 -18.91 17.91 19.05 0.34 -18.57 16 19 C -0.27 -5.72 9.94 22.40 0.22 -5.49 16 20 C 0.03 0.67 10.13 23.87 0.24 0.91 16 21 C -0.17 -4.43 5.87 -20.13 -0.12 -4.55 16 22 C -0.06 -1.64 9.39 22.29 0.21 -1.44 16 23 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 24 H 0.34 11.73 7.31 -89.69 -0.66 11.07 16 25 H 0.32 11.94 4.30 -89.70 -0.39 11.55 16 26 H 0.14 4.21 6.63 -2.91 -0.02 4.19 16 27 H 0.16 3.76 8.06 -2.91 -0.02 3.74 16 28 H 0.19 2.91 8.06 -2.91 -0.02 2.89 16 29 H 0.20 2.00 8.06 -2.91 -0.02 1.98 16 30 H 0.16 3.80 8.01 -2.91 -0.02 3.78 16 Total: -1.00 -65.52 261.00 3.39 -62.13 By element: Atomic # 1 Polarization: 27.13 SS G_CDS: 0.09 Total: 27.22 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: 2.39 Total: -16.09 kcal Atomic # 7 Polarization: -85.17 SS G_CDS: -1.27 Total: -86.44 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: 0.49 Total: -27.54 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 1.69 Total: 40.71 kcal Total: -65.52 3.39 -62.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309228189.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.874 kcal (2) G-P(sol) polarization free energy of solvation -65.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds