Wall clock time and date at job start Mon Mar 30 2020 04:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39646 * 120.14799 * 112.33731 * 3 2 1 5 5 C 1.37931 * 119.84565 * 179.97438 * 4 3 2 6 6 C 1.38387 * 120.15086 * 359.97438 * 5 4 3 7 7 C 1.38342 * 120.30180 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.91896 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.46869 * 264.99668 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99698 * 0.28408 * 11 9 8 13 13 Si 1.86794 * 119.99837 * 180.27476 * 11 9 8 14 14 H 1.48496 * 109.47341 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46983 * 120.00379 * 13 11 9 16 16 H 1.48503 * 109.47491 * 240.00192 * 13 11 9 17 17 C 1.37962 * 120.15510 * 0.27388 * 7 6 5 18 18 C 1.50701 * 120.07998 * 179.74632 * 17 7 6 19 19 C 1.50700 * 109.46912 * 89.99844 * 18 17 7 20 20 O 1.20824 * 119.99951 * 0.02562 * 19 18 17 21 21 O 1.34226 * 119.99802 * 179.97438 * 19 18 17 22 22 H 1.07998 * 120.08083 * 0.02562 * 4 3 2 23 23 H 1.07998 * 119.92568 * 179.97438 * 5 4 3 24 24 H 1.07996 * 119.84728 * 179.97438 * 6 5 4 25 25 H 1.09004 * 109.47210 * 144.99961 * 8 7 6 26 26 H 1.08994 * 109.47551 * 24.99614 * 8 7 6 27 27 H 0.97005 * 119.99651 * 179.97438 * 12 11 9 28 28 H 1.08994 * 109.47465 * 210.00553 * 18 17 7 29 29 H 1.09006 * 109.46761 * 330.00640 * 18 17 7 30 30 H 0.96709 * 116.99524 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.4599 -1.1169 5 6 4.6484 0.4582 -1.1100 6 6 5.3374 0.0034 0.0006 7 6 4.6490 -0.4520 1.1109 8 6 5.4080 -0.9449 2.3159 9 6 5.5551 -2.4427 2.2387 10 1 5.1408 -2.9836 1.4007 11 6 6.2240 -3.1220 3.2349 12 7 6.7288 -2.4633 4.2551 13 14 6.4129 -4.9777 3.1354 14 1 5.7610 -5.4760 1.8977 15 1 7.8559 -5.3277 3.1096 16 1 5.7726 -5.6047 4.3195 17 6 3.2695 -0.4607 1.1155 18 6 2.5213 -0.9624 2.3237 19 6 2.2656 0.1840 3.2679 20 8 2.6508 1.2945 2.9882 21 8 1.6089 -0.0285 4.4191 22 1 2.7327 0.8163 -1.9839 23 1 5.1920 0.8127 -1.9733 24 1 6.4173 0.0038 0.0006 25 1 4.8633 -0.6795 3.2220 26 1 6.3953 -0.4835 2.3372 27 1 7.1991 -2.9412 4.9561 28 1 1.5708 -1.3933 2.0094 29 1 3.1160 -1.7235 2.8290 30 1 1.4683 0.7377 4.9922 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396111663.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:51 Heat of formation + Delta-G solvation = -52.377676 kcal Electronic energy + Delta-G solvation = -16992.812057 eV Core-core repulsion = 14138.620644 eV Total energy + Delta-G solvation = -2854.191413 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.24379 -38.96136 -36.27777 -35.77720 -33.83395 -32.56443 -31.48596 -28.39111 -27.04276 -23.68596 -23.24739 -21.70634 -19.96572 -17.81298 -17.76108 -16.50975 -16.15478 -16.00796 -15.42739 -14.88467 -14.65873 -13.76654 -13.69062 -12.93021 -12.73236 -12.70282 -12.62676 -12.38602 -12.10616 -11.72481 -11.40253 -11.19876 -11.09762 -10.98745 -10.66103 -10.51653 -10.25588 -9.72169 -9.59054 -8.56422 -8.47901 -8.08640 -6.17891 -4.24033 1.12180 1.74352 2.58263 2.83898 3.22123 3.26129 3.31510 3.35269 3.42037 4.13954 4.25590 4.39436 4.89946 5.15735 5.17798 5.35392 5.51142 5.71021 5.72349 5.90385 6.01982 6.25812 6.41032 6.60559 6.77753 6.81371 6.84543 7.24789 7.41526 7.55720 7.67663 7.77652 8.12476 8.22087 8.82656 9.41863 10.91442 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.019710 B = 0.008331 C = 0.007047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.232441 B = 3360.271023 C = 3972.338163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C 0.266 3.734 3 C -0.028 4.028 4 C -0.096 4.096 5 C -0.118 4.118 6 C -0.092 4.092 7 C -0.020 4.020 8 C 0.046 3.954 9 C -0.521 4.521 10 H 0.062 0.938 11 C 0.062 3.938 12 N -0.888 5.888 13 Si 0.894 3.106 14 H -0.270 1.270 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.032 4.032 18 C -0.085 4.085 19 C 0.486 3.514 20 O -0.510 6.510 21 O -0.517 6.517 22 H 0.124 0.876 23 H 0.126 0.874 24 H 0.129 0.871 25 H 0.030 0.970 26 H 0.035 0.965 27 H 0.264 0.736 28 H 0.101 0.899 29 H 0.149 0.851 30 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.567 3.931 -5.302 8.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.113 5.113 2 C -0.048 4.048 3 C -0.032 4.032 4 C -0.117 4.117 5 C -0.136 4.136 6 C -0.111 4.111 7 C -0.020 4.020 8 C 0.009 3.991 9 C -0.559 4.559 10 H 0.080 0.920 11 C -0.140 4.140 12 N -0.526 5.526 13 Si 0.721 3.279 14 H -0.195 1.195 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.035 4.035 18 C -0.122 4.122 19 C 0.329 3.671 20 O -0.398 6.398 21 O -0.328 6.328 22 H 0.142 0.858 23 H 0.144 0.856 24 H 0.147 0.853 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.119 0.881 29 H 0.167 0.833 30 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -6.069 3.874 -5.473 9.044 hybrid contribution 0.559 -0.487 0.424 0.854 sum -5.510 3.387 -5.049 8.205 Atomic orbital electron populations 1.81179 1.12094 1.09602 1.08442 1.25862 0.92871 0.93067 0.93011 1.15877 0.83700 1.06640 0.96958 1.20855 0.94396 1.00004 0.96432 1.21018 0.93435 1.00518 0.98671 1.21353 1.00603 0.96697 0.92402 1.20485 0.91930 0.91889 0.97698 1.18431 0.95167 0.96298 0.89178 1.21064 1.36489 0.90740 1.07558 0.91974 1.25015 0.95151 0.98644 0.95221 1.69964 1.36386 1.35843 1.10404 0.86499 0.78005 0.85140 0.78241 1.19480 1.20876 1.20852 1.19062 0.93513 0.98512 0.92370 1.20423 1.02649 0.96427 0.92705 1.23324 0.73424 0.90120 0.80260 1.90703 1.48137 1.25903 1.75010 1.84546 1.71119 1.44986 1.32197 0.85815 0.85605 0.85274 0.95178 0.94713 0.92665 0.88064 0.83337 0.73647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.67 18.54 41.84 0.78 -6.89 16 2 C 0.27 4.41 13.81 -22.47 -0.31 4.10 16 3 C -0.03 -0.46 5.73 -106.93 -0.61 -1.08 16 4 C -0.10 -1.34 9.76 -39.17 -0.38 -1.72 16 5 C -0.12 -1.62 10.03 -39.64 -0.40 -2.02 16 6 C -0.09 -1.52 9.67 -39.49 -0.38 -1.90 16 7 C -0.02 -0.39 5.06 -104.68 -0.53 -0.92 16 8 C 0.05 1.07 4.42 -29.03 -0.13 0.94 16 9 C -0.52 -13.01 8.29 -34.44 -0.29 -13.29 16 10 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.89 -24.45 13.29 55.43 0.74 -23.72 16 13 Si 0.89 20.02 29.54 -169.99 -5.02 15.00 16 14 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 C -0.03 -0.58 4.41 -104.21 -0.46 -1.04 16 18 C -0.08 -1.49 4.86 -29.03 -0.14 -1.63 16 19 C 0.49 8.67 7.90 36.01 0.28 8.95 16 20 O -0.51 -10.24 16.79 -18.75 -0.31 -10.56 16 21 O -0.52 -7.68 13.42 -39.25 -0.53 -8.20 16 22 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 23 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 24 H 0.13 2.00 8.06 -52.49 -0.42 1.57 16 25 H 0.03 0.74 6.64 -51.93 -0.35 0.40 16 26 H 0.03 0.86 8.05 -51.93 -0.42 0.44 16 27 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 28 H 0.10 1.58 7.10 -51.93 -0.37 1.22 16 29 H 0.15 2.82 6.14 -51.93 -0.32 2.50 16 30 H 0.41 4.10 9.10 45.56 0.41 4.51 16 LS Contribution 279.56 15.07 4.21 4.21 Total: -1.00 -30.08 279.56 -5.42 -35.50 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -1.85 Total: 2.74 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -3.44 Total: -8.09 kcal Atomic # 7 Polarization: -32.12 SS G_CDS: 1.51 Total: -30.61 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.84 Total: -18.76 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.08 -5.42 -35.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396111663.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.874 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds