Wall clock time and date at job start Mon Mar 30 2020 04:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86807 * 119.99720 * 2 1 4 4 H 1.48502 * 109.47232 * 0.02562 * 3 2 1 5 5 H 1.48492 * 109.46974 * 120.00021 * 3 2 1 6 6 H 1.48498 * 109.46755 * 240.00045 * 3 2 1 7 7 C 1.39876 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99881 * 154.63144 * 7 2 1 9 9 C 1.41046 * 120.00395 * 334.63508 * 7 2 1 10 10 C 1.40786 * 120.25026 * 334.25068 * 9 7 2 11 11 C 1.37819 * 119.87457 * 179.74249 * 10 9 7 12 12 O 1.35951 * 119.79635 * 180.27713 * 11 10 9 13 13 C 1.39414 * 120.40166 * 0.53985 * 11 10 9 14 14 C 1.38415 * 120.52467 * 359.74137 * 13 11 10 15 15 O 1.36016 * 119.94766 * 180.02562 * 14 13 11 16 16 C 1.42900 * 116.99849 * 359.97438 * 15 14 13 17 17 F 1.39904 * 109.46673 * 299.99591 * 16 15 14 18 18 F 1.39898 * 109.47206 * 59.99553 * 16 15 14 19 19 C 1.39215 * 120.10988 * 359.97291 * 14 13 11 20 20 N 1.39080 * 120.20541 * 180.02562 * 19 14 13 21 21 H 0.96998 * 119.99887 * 174.17459 * 1 2 3 22 22 H 1.07998 * 120.06662 * 0.02562 * 10 9 7 23 23 H 0.96695 * 113.99761 * 270.25610 * 12 11 10 24 24 H 1.07993 * 119.74204 * 179.75635 * 13 11 10 25 25 H 1.09000 * 109.47056 * 180.02562 * 16 15 14 26 26 H 0.96996 * 119.99998 * 180.02562 * 20 19 14 27 27 H 0.96996 * 119.99566 * 0.02562 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 1.2780 2.7465 0.0006 5 1 3.0967 1.6965 1.2124 6 1 3.0967 1.6965 -1.2125 7 6 2.0084 -1.2114 0.0005 8 1 3.0103 -1.2566 -0.4002 9 6 1.4052 -2.3738 0.5243 10 6 0.3950 -2.2708 1.4994 11 6 -0.1928 -3.4115 2.0020 12 8 -1.1722 -3.3100 2.9395 13 6 0.2145 -4.6691 1.5590 14 6 1.2103 -4.7898 0.6051 15 8 1.5982 -6.0225 0.1809 16 6 0.9358 -7.1471 0.7627 17 9 1.1406 -7.1441 2.1467 18 9 -0.4351 -7.0712 0.4941 19 6 1.8146 -3.6516 0.0785 20 7 2.8150 -3.7707 -0.8804 21 1 -0.4850 -0.8357 -0.0853 22 1 0.0780 -1.2996 1.8496 23 1 -0.8464 -3.3087 3.8499 24 1 -0.2506 -5.5560 1.9629 25 1 1.3394 -8.0662 0.3381 26 1 3.2343 -2.9757 -1.2451 27 1 3.0933 -4.6487 -1.1844 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575717206.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:44 Heat of formation + Delta-G solvation = -176.860978 kcal Electronic energy + Delta-G solvation = -17932.127282 eV Core-core repulsion = 14518.308338 eV Total energy + Delta-G solvation = -3413.818944 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.065 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.87141 -46.88007 -39.06016 -37.31518 -35.99092 -33.61774 -32.26471 -29.06936 -27.02141 -25.65001 -24.78029 -21.34072 -20.92255 -18.91986 -17.83246 -17.43716 -17.13130 -16.39867 -16.17928 -15.44338 -14.68488 -14.07226 -14.00331 -13.75951 -13.52514 -13.32518 -13.14950 -12.88766 -12.62913 -12.14795 -12.02642 -11.32502 -11.10897 -10.76505 -10.61162 -10.40573 -10.08307 -9.29171 -9.19406 -8.98799 -7.54168 -7.27140 -6.32294 -4.35365 2.60587 2.74012 3.13908 3.20768 3.23824 3.34967 3.91206 4.01861 4.45096 4.71865 5.03335 5.09323 5.19397 5.51328 6.18215 6.37976 6.55477 6.86366 7.12411 7.30387 7.40954 7.69919 7.79728 7.95728 8.03981 8.39046 8.61913 8.76792 8.93124 8.96702 10.05458 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.034110 B = 0.007579 C = 0.006602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.676575 B = 3693.334574 C = 4240.295527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.039 3.961 3 Si 1.066 2.934 4 H -0.274 1.274 5 H -0.275 1.275 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.076 0.924 9 C 0.085 3.915 10 C -0.235 4.235 11 C 0.115 3.885 12 O -0.508 6.508 13 C -0.292 4.292 14 C 0.051 3.949 15 O -0.331 6.331 16 C 0.415 3.585 17 F -0.206 7.206 18 F -0.204 7.204 19 C 0.106 3.894 20 N -0.877 5.877 21 H 0.301 0.699 22 H 0.116 0.884 23 H 0.370 0.630 24 H 0.110 0.890 25 H 0.165 0.835 26 H 0.393 0.607 27 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.928 -7.793 0.648 8.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.184 4.184 3 Si 0.890 3.110 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.546 4.546 8 H 0.094 0.906 9 C 0.079 3.921 10 C -0.257 4.257 11 C 0.070 3.930 12 O -0.316 6.316 13 C -0.313 4.313 14 C 0.004 3.996 15 O -0.250 6.250 16 C 0.323 3.677 17 F -0.188 7.188 18 F -0.186 7.186 19 C 0.004 3.996 20 N -0.420 5.420 21 H 0.115 0.885 22 H 0.134 0.866 23 H 0.223 0.777 24 H 0.128 0.872 25 H 0.181 0.819 26 H 0.222 0.778 27 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 3.331 -6.138 0.150 6.985 hybrid contribution 0.385 -1.944 0.397 2.021 sum 3.716 -8.082 0.548 8.912 Atomic orbital electron populations 1.70455 1.08159 1.34560 1.28420 1.26955 0.95657 1.04104 0.91661 0.83619 0.75593 0.73951 0.77860 1.19888 1.20059 1.20233 1.20129 1.02747 0.93864 1.37873 0.90605 1.16951 0.92979 0.90057 0.92102 1.21118 1.04018 0.97133 1.03385 1.17791 0.90411 0.91703 0.93094 1.84795 1.33200 1.96313 1.17288 1.20587 1.05202 0.97510 1.07992 1.17716 1.00283 0.80819 1.00750 1.86379 1.60946 1.13571 1.64061 1.23017 0.76110 0.92396 0.76129 1.93056 1.94436 1.96978 1.34303 1.93071 1.35312 1.96899 1.93319 1.17180 0.96326 0.90449 0.95662 1.41708 1.43715 1.09078 1.47529 0.88478 0.86624 0.77727 0.87198 0.81856 0.77798 0.79101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.12 12.32 55.54 0.68 -20.44 15 2 C 0.04 0.96 4.93 -17.33 -0.09 0.87 15 3 Si 1.07 21.08 30.00 -169.99 -5.10 15.98 15 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 5 H -0.28 -5.27 7.11 56.52 0.40 -4.87 15 6 H -0.28 -5.14 7.11 56.52 0.40 -4.74 15 7 C -0.52 -13.14 8.43 -37.91 -0.32 -13.46 15 8 H 0.08 1.81 6.74 -52.48 -0.35 1.46 15 9 C 0.08 2.20 5.30 -106.67 -0.57 1.63 15 10 C -0.24 -6.14 7.86 -38.77 -0.30 -6.45 15 11 C 0.12 2.84 6.69 -39.30 -0.26 2.58 15 12 O -0.51 -11.21 13.49 -19.59 -0.26 -11.48 15 13 C -0.29 -6.94 8.20 -39.08 -0.32 -7.26 15 14 C 0.05 1.19 6.49 -39.15 -0.25 0.93 15 15 O -0.33 -6.37 9.66 -19.79 -0.19 -6.56 15 16 C 0.41 6.39 5.98 101.05 0.60 6.99 15 17 F -0.21 -3.48 15.58 2.25 0.04 -3.44 15 18 F -0.20 -3.59 15.57 2.25 0.04 -3.55 15 19 C 0.11 2.54 6.81 -83.01 -0.56 1.97 15 20 N -0.88 -17.75 8.98 32.85 0.29 -17.46 15 21 H 0.30 8.41 6.70 -40.82 -0.27 8.14 15 22 H 0.12 3.13 6.50 -52.49 -0.34 2.79 15 23 H 0.37 6.20 9.06 45.56 0.41 6.61 15 24 H 0.11 2.49 5.04 -52.49 -0.26 2.23 15 25 H 0.16 1.52 8.14 -51.93 -0.42 1.10 15 26 H 0.39 7.64 7.04 -40.82 -0.29 7.35 15 27 H 0.38 6.80 8.17 -40.82 -0.33 6.46 15 LS Contribution 245.02 15.07 3.69 3.69 Total: -1.00 -30.43 245.02 -3.55 -33.97 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -0.66 Total: 21.47 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -2.07 Total: -12.18 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.98 Total: -37.90 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.46 Total: -18.04 kcal Atomic # 9 Polarization: -7.07 SS G_CDS: 0.07 Total: -7.00 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.10 Total: 15.98 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -30.43 -3.55 -33.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575717206.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.888 kcal (2) G-P(sol) polarization free energy of solvation -30.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds