Wall clock time and date at job start Mon Mar 30 2020 04:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86807 * 119.99720 * 2 1 4 4 H 1.48502 * 109.47232 * 0.02562 * 3 2 1 5 5 H 1.48492 * 109.46974 * 120.00021 * 3 2 1 6 6 H 1.48498 * 109.46755 * 240.00045 * 3 2 1 7 7 C 1.39876 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99881 * 154.63144 * 7 2 1 9 9 C 1.41046 * 120.00395 * 334.63508 * 7 2 1 10 10 C 1.40786 * 120.25026 * 334.25068 * 9 7 2 11 11 C 1.37819 * 119.87457 * 179.74249 * 10 9 7 12 12 O 1.35951 * 119.79635 * 180.27713 * 11 10 9 13 13 C 1.39414 * 120.40166 * 0.53985 * 11 10 9 14 14 C 1.38415 * 120.52467 * 359.74137 * 13 11 10 15 15 O 1.36016 * 119.94766 * 180.02562 * 14 13 11 16 16 C 1.42900 * 116.99849 * 359.97438 * 15 14 13 17 17 F 1.39904 * 109.46673 * 299.99591 * 16 15 14 18 18 F 1.39898 * 109.47206 * 59.99553 * 16 15 14 19 19 C 1.39215 * 120.10988 * 359.97291 * 14 13 11 20 20 N 1.39080 * 120.20541 * 180.02562 * 19 14 13 21 21 H 0.96998 * 119.99887 * 174.17459 * 1 2 3 22 22 H 1.07998 * 120.06662 * 0.02562 * 10 9 7 23 23 H 0.96695 * 113.99761 * 270.25610 * 12 11 10 24 24 H 1.07993 * 119.74204 * 179.75635 * 13 11 10 25 25 H 1.09000 * 109.47056 * 180.02562 * 16 15 14 26 26 H 0.96996 * 119.99998 * 180.02562 * 20 19 14 27 27 H 0.96996 * 119.99566 * 0.02562 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 1.2780 2.7465 0.0006 5 1 3.0967 1.6965 1.2124 6 1 3.0967 1.6965 -1.2125 7 6 2.0084 -1.2114 0.0005 8 1 3.0103 -1.2566 -0.4002 9 6 1.4052 -2.3738 0.5243 10 6 0.3950 -2.2708 1.4994 11 6 -0.1928 -3.4115 2.0020 12 8 -1.1722 -3.3100 2.9395 13 6 0.2145 -4.6691 1.5590 14 6 1.2103 -4.7898 0.6051 15 8 1.5982 -6.0225 0.1809 16 6 0.9358 -7.1471 0.7627 17 9 1.1406 -7.1441 2.1467 18 9 -0.4351 -7.0712 0.4941 19 6 1.8146 -3.6516 0.0785 20 7 2.8150 -3.7707 -0.8804 21 1 -0.4850 -0.8357 -0.0853 22 1 0.0780 -1.2996 1.8496 23 1 -0.8464 -3.3087 3.8499 24 1 -0.2506 -5.5560 1.9629 25 1 1.3394 -8.0662 0.3381 26 1 3.2343 -2.9757 -1.2451 27 1 3.0933 -4.6487 -1.1844 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575717206.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:44 Heat of formation + Delta-G solvation = -200.452589 kcal Electronic energy + Delta-G solvation = -17933.150291 eV Core-core repulsion = 14518.308338 eV Total energy + Delta-G solvation = -3414.841953 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.065 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.17028 -48.18841 -40.80793 -38.99735 -37.77333 -35.43603 -34.04589 -30.91920 -28.76970 -27.33774 -26.39817 -23.10651 -22.73001 -20.62677 -19.27408 -18.79509 -18.75299 -18.15867 -17.91253 -17.12420 -16.35567 -15.67989 -15.61127 -15.36830 -15.21552 -14.78334 -14.58573 -14.52089 -14.38511 -13.84915 -13.44572 -13.07599 -12.78036 -12.45301 -12.35243 -11.97183 -11.81836 -11.12548 -10.98591 -10.83467 -9.44213 -9.22423 -8.12064 -6.29268 0.73037 0.85992 1.54671 1.64602 1.82656 1.88918 2.37165 2.61729 2.68313 3.30469 3.42991 3.60246 3.72285 3.83595 4.34050 4.57825 4.68528 5.03225 5.25470 5.48363 5.51435 5.77104 5.83983 6.09672 6.24011 6.50472 6.86547 6.96891 7.14411 7.38449 8.07160 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.034110 B = 0.007579 C = 0.006602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.676575 B = 3693.334574 C = 4240.295527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.002 3.998 3 Si 1.119 2.881 4 H -0.279 1.279 5 H -0.265 1.265 6 H -0.253 1.253 7 C -0.538 4.538 8 H 0.087 0.913 9 C 0.059 3.941 10 C -0.256 4.256 11 C 0.106 3.894 12 O -0.514 6.514 13 C -0.294 4.294 14 C 0.052 3.948 15 O -0.331 6.331 16 C 0.405 3.595 17 F -0.215 7.215 18 F -0.218 7.218 19 C 0.094 3.906 20 N -0.864 5.864 21 H 0.281 0.719 22 H 0.095 0.905 23 H 0.394 0.606 24 H 0.120 0.880 25 H 0.236 0.764 26 H 0.397 0.603 27 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.232 -8.817 0.290 10.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.214 4.214 3 Si 0.936 3.064 4 H -0.204 1.204 5 H -0.189 1.189 6 H -0.177 1.177 7 C -0.566 4.566 8 H 0.105 0.895 9 C 0.053 3.947 10 C -0.277 4.277 11 C 0.061 3.939 12 O -0.325 6.325 13 C -0.315 4.315 14 C 0.004 3.996 15 O -0.250 6.250 16 C 0.316 3.684 17 F -0.197 7.197 18 F -0.200 7.200 19 C -0.009 4.009 20 N -0.408 5.408 21 H 0.094 0.906 22 H 0.113 0.887 23 H 0.250 0.750 24 H 0.138 0.862 25 H 0.252 0.748 26 H 0.227 0.773 27 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 4.655 -7.210 -0.207 8.585 hybrid contribution -0.049 -1.820 0.560 1.905 sum 4.607 -9.030 0.353 10.143 Atomic orbital electron populations 1.70584 1.09212 1.33198 1.31271 1.28423 0.95529 1.07508 0.89904 0.82977 0.74610 0.69617 0.79185 1.20375 1.18943 1.17664 1.20385 1.03281 0.94333 1.38601 0.89532 1.17269 0.93428 0.91415 0.92547 1.21062 1.05343 0.96730 1.04603 1.17899 0.90538 0.91747 0.93745 1.84712 1.32941 1.96270 1.18617 1.20790 1.05300 0.97377 1.08004 1.17737 0.99466 0.82429 0.99920 1.86372 1.61387 1.12898 1.64304 1.24209 0.75463 0.92936 0.75817 1.93036 1.94388 1.96919 1.35345 1.93044 1.36692 1.96897 1.93345 1.17317 0.97013 0.90299 0.96298 1.41595 1.42594 1.10149 1.46467 0.90646 0.88700 0.75037 0.86185 0.74826 0.77321 0.77476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.94 12.32 21.82 0.27 -44.67 15 2 C 0.00 0.12 4.93 85.23 0.42 0.54 15 3 Si 1.12 41.99 30.00 68.60 2.06 44.04 15 4 H -0.28 -10.58 7.11 99.48 0.71 -9.88 15 5 H -0.26 -9.42 7.11 99.48 0.71 -8.71 15 6 H -0.25 -8.45 7.11 99.48 0.71 -7.75 15 7 C -0.54 -27.45 8.43 23.36 0.20 -27.25 15 8 H 0.09 4.09 6.74 -2.91 -0.02 4.07 15 9 C 0.06 3.11 5.30 -21.19 -0.11 2.99 15 10 C -0.26 -13.74 7.86 22.79 0.18 -13.56 15 11 C 0.11 5.28 6.69 22.45 0.15 5.43 15 12 O -0.51 -22.70 13.49 -93.00 -1.25 -23.96 15 13 C -0.29 -13.76 8.20 22.60 0.19 -13.57 15 14 C 0.05 2.36 6.49 22.55 0.15 2.51 15 15 O -0.33 -11.87 9.66 -93.73 -0.91 -12.78 15 16 C 0.41 11.11 5.98 113.37 0.68 11.79 15 17 F -0.21 -6.69 15.58 44.97 0.70 -5.99 15 18 F -0.22 -7.13 15.57 44.97 0.70 -6.43 15 19 C 0.09 4.46 6.81 39.00 0.27 4.72 15 20 N -0.86 -33.71 8.98 -50.00 -0.45 -34.16 15 21 H 0.28 16.43 6.70 -92.71 -0.62 15.80 15 22 H 0.09 5.38 6.50 -2.91 -0.02 5.37 15 23 H 0.39 12.99 9.06 -74.06 -0.67 12.32 15 24 H 0.12 5.28 5.04 -2.91 -0.01 5.27 15 25 H 0.24 3.08 8.14 -2.39 -0.02 3.06 15 26 H 0.40 14.91 7.04 -92.71 -0.65 14.26 15 27 H 0.40 13.20 8.17 -92.71 -0.76 12.44 15 Total: -1.00 -66.65 245.02 2.57 -64.08 By element: Atomic # 1 Polarization: 46.92 SS G_CDS: -0.65 Total: 46.26 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: 2.11 Total: -26.40 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -0.18 Total: -78.83 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -2.16 Total: -36.73 kcal Atomic # 9 Polarization: -13.82 SS G_CDS: 1.40 Total: -12.42 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.06 Total: 44.04 kcal Total: -66.65 2.57 -64.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575717206.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.377 kcal (2) G-P(sol) polarization free energy of solvation -66.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds