Wall clock time and date at job start Mon Mar 30 2020 04:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30939 * 1 3 3 Si 1.86799 * 119.99678 * 2 1 4 4 H 1.48497 * 109.47009 * 275.24960 * 3 2 1 5 5 H 1.48506 * 109.47119 * 35.24941 * 3 2 1 6 6 H 1.48501 * 109.47034 * 155.24705 * 3 2 1 7 7 C 1.39886 * 120.00102 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00066 * 338.45649 * 7 2 1 9 9 C 1.40925 * 119.99840 * 158.45416 * 7 2 1 10 10 C 1.41565 * 120.31259 * 138.52480 * 9 7 2 11 11 N 1.39058 * 120.15348 * 359.97438 * 10 9 7 12 12 C 1.38418 * 119.68714 * 179.97438 * 10 9 7 13 13 C 1.38443 * 120.33355 * 0.02562 * 12 10 9 14 14 C 1.38914 * 120.64392 * 359.95859 * 13 12 10 15 15 O 1.36088 * 119.84808 * 179.97438 * 14 13 12 16 16 C 1.42898 * 117.00254 * 0.02562 * 15 14 13 17 17 F 1.39905 * 109.47300 * 59.99473 * 16 15 14 18 18 F 1.39900 * 109.47025 * 300.00074 * 16 15 14 19 19 C 1.38524 * 120.29819 * 0.27254 * 14 13 12 20 20 O 1.35829 * 120.17027 * 179.72412 * 19 14 13 21 21 H 0.96992 * 120.00185 * 0.02562 * 1 2 3 22 22 H 0.97006 * 119.99496 * 179.97438 * 11 10 9 23 23 H 0.96994 * 120.00343 * 359.97438 * 11 10 9 24 24 H 1.07999 * 119.83140 * 180.02562 * 12 10 9 25 25 H 1.07997 * 119.67866 * 179.97438 * 13 12 10 26 26 H 1.09000 * 109.47495 * 179.97438 * 16 15 14 27 27 H 0.96706 * 113.99820 * 88.63994 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3094 0.0000 0.0000 3 14 2.2433 1.6178 0.0000 4 1 2.3798 2.1105 -1.3942 5 1 1.5005 2.6181 0.8081 6 1 3.5919 1.4108 0.5862 7 6 2.0088 -1.2114 0.0005 8 1 1.5255 -2.1139 0.3444 9 6 3.3442 -1.2542 -0.4476 10 6 4.3065 -2.0265 0.2464 11 7 3.9393 -2.7484 1.3768 12 6 5.6144 -2.0597 -0.2055 13 6 5.9839 -1.3420 -1.3302 14 6 5.0510 -0.5798 -2.0219 15 8 5.4321 0.1198 -3.1253 16 6 6.8041 0.0231 -3.5129 17 9 7.1182 -1.3123 -3.7875 18 9 7.6163 0.4889 -2.4734 19 6 3.7360 -0.5239 -1.5902 20 8 2.8271 0.2266 -2.2653 21 1 -0.4850 0.8400 -0.0004 22 1 4.6005 -3.2772 1.8504 23 1 3.0223 -2.7233 1.6917 24 1 6.3503 -2.6484 0.3220 25 1 7.0074 -1.3751 -1.6732 26 1 6.9731 0.6265 -4.4048 27 1 2.3824 -0.2455 -2.9827 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575717595.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:28 Heat of formation + Delta-G solvation = -188.277869 kcal Electronic energy + Delta-G solvation = -18220.031182 eV Core-core repulsion = 14805.717165 eV Total energy + Delta-G solvation = -3414.314017 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.065 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.14589 -48.15174 -40.85022 -38.71757 -37.57098 -35.18841 -34.05839 -31.66948 -29.14675 -26.83768 -26.39299 -23.28897 -22.32071 -20.06278 -19.59944 -18.78425 -18.71292 -18.41317 -17.60568 -16.94036 -16.55225 -16.23901 -15.45222 -15.29232 -15.07596 -14.76227 -14.58781 -14.41359 -14.22255 -13.94592 -13.58782 -13.09683 -12.87467 -12.65422 -12.44006 -12.06366 -11.93471 -10.95145 -10.88860 -10.64658 -9.35479 -8.74775 -8.08482 -6.28974 0.63646 0.85964 1.37725 1.54500 1.55798 1.96748 2.35467 2.65583 2.71042 3.28372 3.43798 3.67881 3.84618 3.90138 4.26382 4.51679 4.68470 5.10394 5.33160 5.35467 5.40972 5.66867 5.89347 6.17373 6.32058 6.56703 6.90435 6.97312 7.25212 7.41021 8.30027 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.027004 B = 0.010196 C = 0.008407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.635670 B = 2745.457252 C = 3329.763869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.083 3.917 3 Si 0.963 3.037 4 H -0.244 1.244 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.479 4.479 8 H 0.068 0.932 9 C 0.018 3.982 10 C 0.136 3.864 11 N -0.865 5.865 12 C -0.168 4.168 13 C -0.222 4.222 14 C 0.043 3.957 15 O -0.334 6.334 16 C 0.403 3.597 17 F -0.212 7.212 18 F -0.215 7.215 19 C -0.010 4.010 20 O -0.479 6.479 21 H 0.286 0.714 22 H 0.400 0.600 23 H 0.397 0.603 24 H 0.135 0.865 25 H 0.129 0.871 26 H 0.229 0.771 27 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.898 -0.335 -4.705 11.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.132 4.132 3 Si 0.791 3.209 4 H -0.170 1.170 5 H -0.222 1.222 6 H -0.212 1.212 7 C -0.509 4.509 8 H 0.086 0.914 9 C 0.013 3.987 10 C 0.032 3.968 11 N -0.407 5.407 12 C -0.192 4.192 13 C -0.242 4.242 14 C -0.002 4.002 15 O -0.252 6.252 16 C 0.313 3.687 17 F -0.194 7.194 18 F -0.197 7.197 19 C -0.057 4.057 20 O -0.289 6.289 21 H 0.097 0.903 22 H 0.229 0.771 23 H 0.226 0.774 24 H 0.153 0.847 25 H 0.146 0.854 26 H 0.245 0.755 27 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 10.714 0.309 -4.440 11.602 hybrid contribution -0.020 -0.134 0.176 0.222 sum 10.694 0.174 -4.265 11.514 Atomic orbital electron populations 1.69793 1.08809 1.30633 1.38711 1.26302 0.94644 1.02791 0.89472 0.85426 0.77860 0.78590 0.79036 1.16952 1.22219 1.21238 1.18722 0.95087 0.95784 1.41264 0.91358 1.17587 0.93538 0.94732 0.92866 1.18089 0.92136 0.97163 0.89437 1.41935 1.13960 1.54958 1.29805 1.20239 0.94426 1.05194 0.99342 1.20784 0.98382 1.04479 1.00512 1.18962 0.94175 0.97818 0.89206 1.86568 1.27129 1.67462 1.44071 1.24171 0.75325 0.79486 0.89691 1.93041 1.92659 1.39898 1.93778 1.93036 1.74315 1.88429 1.63911 1.17758 0.86195 1.06115 0.95636 1.85065 1.55673 1.38532 1.49635 0.90341 0.77063 0.77371 0.84724 0.85355 0.75484 0.77670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.63 13.93 21.82 0.30 -46.33 15 2 C 0.08 4.45 4.86 85.22 0.41 4.86 15 3 Si 0.96 47.45 24.67 68.60 1.69 49.14 15 4 H -0.24 -12.02 6.07 99.48 0.60 -11.42 15 5 H -0.29 -13.77 7.11 99.48 0.71 -13.07 15 6 H -0.29 -15.01 7.11 99.48 0.71 -14.30 15 7 C -0.48 -25.65 8.45 23.33 0.20 -25.45 15 8 H 0.07 3.82 7.48 -2.91 -0.02 3.80 15 9 C 0.02 0.92 4.75 -21.09 -0.10 0.82 15 10 C 0.14 5.96 6.78 38.86 0.26 6.23 15 11 N -0.86 -31.42 8.99 -50.38 -0.45 -31.87 15 12 C -0.17 -6.68 9.86 22.36 0.22 -6.46 15 13 C -0.22 -9.04 8.25 22.48 0.19 -8.85 15 14 C 0.04 1.89 6.48 22.50 0.15 2.03 15 15 O -0.33 -12.57 10.20 -80.21 -0.82 -13.39 15 16 C 0.40 10.82 5.98 113.37 0.68 11.50 15 17 F -0.21 -6.15 15.57 44.97 0.70 -5.45 15 18 F -0.21 -6.51 15.57 44.97 0.70 -5.81 15 19 C -0.01 -0.48 5.23 23.05 0.12 -0.36 15 20 O -0.48 -22.64 8.17 -77.30 -0.63 -23.27 15 21 H 0.29 14.50 8.30 -92.71 -0.77 13.73 15 22 H 0.40 11.36 8.84 -92.70 -0.82 10.54 15 23 H 0.40 14.94 7.37 -92.71 -0.68 14.25 15 24 H 0.13 4.39 8.06 -2.91 -0.02 4.37 15 25 H 0.13 4.73 5.04 -2.91 -0.01 4.71 15 26 H 0.23 3.19 8.14 -2.39 -0.02 3.17 15 27 H 0.37 14.90 9.06 -74.05 -0.67 14.23 15 Total: -1.00 -65.25 240.32 2.61 -62.64 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: -1.00 Total: 30.01 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 2.12 Total: -15.68 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -0.15 Total: -78.20 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -1.45 Total: -36.66 kcal Atomic # 9 Polarization: -12.66 SS G_CDS: 1.40 Total: -11.26 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 1.69 Total: 49.14 kcal Total: -65.25 2.61 -62.64 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575717595.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.641 kcal (2) G-P(sol) polarization free energy of solvation -65.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds