Wall clock time and date at job start Mon Mar 30 2020 04:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30958 * 1 3 3 Si 1.86791 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47265 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47072 * 299.99740 * 3 2 1 6 6 H 1.48502 * 109.47457 * 60.00000 * 3 2 1 7 7 C 1.39838 * 119.99399 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99786 * 162.15742 * 7 2 1 9 9 C 1.40977 * 120.00100 * 341.88275 * 7 2 1 10 10 C 1.40917 * 120.18225 * 335.26873 * 9 7 2 11 11 C 1.36269 * 120.07170 * 180.02562 * 10 9 7 12 12 C 1.39621 * 120.46335 * 359.95176 * 11 10 9 13 13 N 1.39149 * 119.81368 * 180.02562 * 12 11 10 14 14 C 1.39565 * 120.36623 * 0.02562 * 12 11 10 15 15 O 1.36112 * 120.04325 * 180.02562 * 14 12 11 16 16 C 1.42894 * 117.00075 * 90.00466 * 15 14 12 17 17 F 1.39899 * 109.47031 * 299.99930 * 16 15 14 18 18 F 1.39904 * 109.47234 * 60.00003 * 16 15 14 19 19 C 1.38349 * 119.91198 * 359.74582 * 14 12 11 20 20 O 1.35809 * 120.22466 * 180.24843 * 19 14 12 21 21 H 0.97004 * 119.99376 * 0.02562 * 1 2 3 22 22 H 1.07996 * 119.95901 * 359.97438 * 10 9 7 23 23 H 1.08004 * 119.76351 * 179.97438 * 11 10 9 24 24 H 0.96999 * 120.00298 * 359.97438 * 13 12 11 25 25 H 0.97006 * 119.99633 * 180.02562 * 13 12 11 26 26 H 1.08995 * 109.46917 * 179.97438 * 16 15 14 27 27 H 0.96692 * 114.00257 * 270.25764 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2437 1.6176 0.0000 4 1 3.7037 1.3461 -0.0006 5 1 1.8851 2.3962 -1.2125 6 1 1.8851 2.3964 1.2125 7 6 2.0086 -1.2111 0.0005 8 1 3.0497 -1.2338 -0.2861 9 6 1.3561 -2.4015 0.3807 10 6 0.2310 -2.3532 1.2279 11 6 -0.3977 -3.5053 1.5944 12 6 0.0638 -4.7405 1.1353 13 7 -0.5888 -5.9084 1.5176 14 6 1.1761 -4.8101 0.2952 15 8 1.6201 -6.0178 -0.1489 16 6 1.0703 -6.4997 -1.3766 17 9 -0.3161 -6.6339 -1.2457 18 9 1.3563 -5.5934 -2.4032 19 6 1.8233 -3.6497 -0.0903 20 8 2.9031 -3.7098 -0.9117 21 1 -0.4849 0.8401 -0.0004 22 1 -0.1327 -1.4022 1.5877 23 1 -1.2593 -3.4625 2.2442 24 1 -1.3619 -5.8631 2.1017 25 1 -0.2702 -6.7681 1.2005 26 1 1.5086 -7.4687 -1.6153 27 1 3.7468 -3.7938 -0.4468 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575718019.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:03 Heat of formation + Delta-G solvation = -173.080234 kcal Electronic energy + Delta-G solvation = -18152.286905 eV Core-core repulsion = 14738.631906 eV Total energy + Delta-G solvation = -3413.654999 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.065 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.38905 -46.51828 -38.96552 -36.50711 -35.66571 -34.01045 -32.07652 -28.45478 -28.28225 -25.08089 -24.35689 -21.18909 -20.78521 -18.35424 -17.56159 -17.23694 -16.95423 -16.68273 -15.92462 -14.98647 -14.84309 -14.48698 -13.73788 -13.34773 -13.21871 -13.17065 -12.86070 -12.51054 -12.12418 -11.72804 -11.56865 -11.34586 -11.20217 -11.08222 -10.59906 -10.36888 -9.79415 -9.48422 -9.01879 -8.74041 -7.40524 -6.77630 -6.59649 -4.13467 2.37404 2.74648 3.11625 3.16308 3.19115 3.81815 3.99112 4.30221 4.62654 4.83913 5.11225 5.37314 5.44328 5.76652 6.24670 6.58050 6.69050 6.96467 7.19162 7.30657 7.53369 7.68756 7.88924 8.09511 8.40223 8.54637 8.66088 8.77733 8.89197 9.17466 10.25219 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.032367 B = 0.008157 C = 0.007167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.866006 B = 3431.726146 C = 3905.590268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.072 3.928 3 Si 0.909 3.091 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.446 4.446 8 H 0.080 0.920 9 C 0.059 3.941 10 C -0.096 4.096 11 C -0.171 4.171 12 C 0.121 3.879 13 N -0.883 5.883 14 C -0.015 4.015 15 O -0.327 6.327 16 C 0.395 3.605 17 F -0.213 7.213 18 F -0.198 7.198 19 C 0.022 3.978 20 O -0.479 6.479 21 H 0.279 0.721 22 H 0.128 0.872 23 H 0.099 0.901 24 H 0.386 0.614 25 H 0.385 0.615 26 H 0.153 0.847 27 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.869 -7.871 1.381 8.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.477 4.477 8 H 0.098 0.902 9 C 0.055 3.945 10 C -0.116 4.116 11 C -0.193 4.193 12 C 0.020 3.980 13 N -0.426 5.426 14 C -0.062 4.062 15 O -0.247 6.247 16 C 0.305 3.695 17 F -0.195 7.195 18 F -0.180 7.180 19 C -0.025 4.025 20 O -0.286 6.286 21 H 0.089 0.911 22 H 0.146 0.854 23 H 0.117 0.883 24 H 0.212 0.788 25 H 0.212 0.788 26 H 0.170 0.830 27 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 0.391 -7.660 0.941 7.728 hybrid contribution 0.175 0.527 0.171 0.581 sum 0.566 -7.133 1.113 7.242 Atomic orbital electron populations 1.69871 1.07462 1.28966 1.36709 1.25855 0.94729 1.01205 0.92574 0.86246 0.80955 0.81018 0.78389 1.18473 1.20124 1.19874 1.19239 0.98314 0.90743 1.39356 0.90231 1.17713 0.93487 0.91534 0.91757 1.20984 0.96543 0.96913 0.97182 1.20021 1.02382 0.91131 1.05812 1.17403 0.93467 0.87110 1.00039 1.41803 1.36211 1.05601 1.58972 1.18143 1.00545 0.82738 1.04731 1.86594 1.64980 1.36151 1.36947 1.23452 0.75836 0.91422 0.78818 1.93029 1.34732 1.96297 1.95428 1.93104 1.92912 1.71441 1.60544 1.18551 0.94008 0.90671 0.99308 1.84817 1.14744 1.95781 1.33226 0.91050 0.85408 0.88276 0.78806 0.78781 0.83042 0.79285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.91 10.98 55.54 0.61 -20.30 15 2 C 0.07 1.83 5.12 -17.33 -0.09 1.74 15 3 Si 0.91 18.92 29.60 -169.99 -5.03 13.89 15 4 H -0.26 -5.38 7.11 56.52 0.40 -4.98 15 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 15 6 H -0.27 -5.54 7.11 56.52 0.40 -5.13 15 7 C -0.45 -11.94 8.70 -37.95 -0.33 -12.27 15 8 H 0.08 2.08 7.65 -52.48 -0.40 1.68 15 9 C 0.06 1.57 5.58 -106.66 -0.60 0.98 15 10 C -0.10 -2.44 8.62 -39.28 -0.34 -2.78 15 11 C -0.17 -3.90 9.80 -39.77 -0.39 -4.29 15 12 C 0.12 2.67 6.54 -83.53 -0.55 2.12 15 13 N -0.88 -15.54 8.60 32.57 0.28 -15.26 15 14 C -0.01 -0.34 5.35 -39.05 -0.21 -0.55 15 15 O -0.33 -6.58 9.34 -34.92 -0.33 -6.90 15 16 C 0.39 6.86 6.35 101.05 0.64 7.50 15 17 F -0.21 -3.90 15.78 2.25 0.04 -3.86 15 18 F -0.20 -4.13 16.42 2.25 0.04 -4.09 15 19 C 0.02 0.55 6.48 -38.36 -0.25 0.30 15 20 O -0.48 -11.30 11.99 -33.96 -0.41 -11.70 15 21 H 0.28 6.59 8.30 -40.82 -0.34 6.25 15 22 H 0.13 3.30 6.17 -52.49 -0.32 2.98 15 23 H 0.10 1.98 8.06 -52.48 -0.42 1.56 15 24 H 0.39 5.79 8.83 -40.82 -0.36 5.43 15 25 H 0.39 6.31 7.37 -40.82 -0.30 6.01 15 26 H 0.15 1.75 8.14 -51.93 -0.42 1.32 15 27 H 0.35 6.76 9.06 45.56 0.41 7.17 15 LS Contribution 250.16 15.07 3.77 3.77 Total: -1.00 -30.63 250.16 -4.09 -34.72 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -0.95 Total: 16.98 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -2.11 Total: -7.25 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.89 Total: -35.56 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.73 Total: -18.61 kcal Atomic # 9 Polarization: -8.02 SS G_CDS: 0.07 Total: -7.95 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.63 -4.09 -34.72 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718019.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.358 kcal (2) G-P(sol) polarization free energy of solvation -30.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds