Wall clock time and date at job start Mon Mar 30 2020 04:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30958 * 1 3 3 Si 1.86791 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47265 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47072 * 299.99740 * 3 2 1 6 6 H 1.48502 * 109.47457 * 60.00000 * 3 2 1 7 7 C 1.39838 * 119.99399 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99786 * 162.15742 * 7 2 1 9 9 C 1.40977 * 120.00100 * 341.88275 * 7 2 1 10 10 C 1.40917 * 120.18225 * 335.26873 * 9 7 2 11 11 C 1.36269 * 120.07170 * 180.02562 * 10 9 7 12 12 C 1.39621 * 120.46335 * 359.95176 * 11 10 9 13 13 N 1.39149 * 119.81368 * 180.02562 * 12 11 10 14 14 C 1.39565 * 120.36623 * 0.02562 * 12 11 10 15 15 O 1.36112 * 120.04325 * 180.02562 * 14 12 11 16 16 C 1.42894 * 117.00075 * 90.00466 * 15 14 12 17 17 F 1.39899 * 109.47031 * 299.99930 * 16 15 14 18 18 F 1.39904 * 109.47234 * 60.00003 * 16 15 14 19 19 C 1.38349 * 119.91198 * 359.74582 * 14 12 11 20 20 O 1.35809 * 120.22466 * 180.24843 * 19 14 12 21 21 H 0.97004 * 119.99376 * 0.02562 * 1 2 3 22 22 H 1.07996 * 119.95901 * 359.97438 * 10 9 7 23 23 H 1.08004 * 119.76351 * 179.97438 * 11 10 9 24 24 H 0.96999 * 120.00298 * 359.97438 * 13 12 11 25 25 H 0.97006 * 119.99633 * 180.02562 * 13 12 11 26 26 H 1.08995 * 109.46917 * 179.97438 * 16 15 14 27 27 H 0.96692 * 114.00257 * 270.25764 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3096 0.0000 0.0000 3 14 2.2437 1.6176 0.0000 4 1 3.7037 1.3461 -0.0006 5 1 1.8851 2.3962 -1.2125 6 1 1.8851 2.3964 1.2125 7 6 2.0086 -1.2111 0.0005 8 1 3.0497 -1.2338 -0.2861 9 6 1.3561 -2.4015 0.3807 10 6 0.2310 -2.3532 1.2279 11 6 -0.3977 -3.5053 1.5944 12 6 0.0638 -4.7405 1.1353 13 7 -0.5888 -5.9084 1.5176 14 6 1.1761 -4.8101 0.2952 15 8 1.6201 -6.0178 -0.1489 16 6 1.0703 -6.4997 -1.3766 17 9 -0.3161 -6.6339 -1.2457 18 9 1.3563 -5.5934 -2.4032 19 6 1.8233 -3.6497 -0.0903 20 8 2.9031 -3.7098 -0.9117 21 1 -0.4849 0.8401 -0.0004 22 1 -0.1327 -1.4022 1.5877 23 1 -1.2593 -3.4625 2.2442 24 1 -1.3619 -5.8631 2.1017 25 1 -0.2702 -6.7681 1.2005 26 1 1.5086 -7.4687 -1.6153 27 1 3.7468 -3.7938 -0.4468 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575718019.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:02 Heat of formation + Delta-G solvation = -196.044945 kcal Electronic energy + Delta-G solvation = -18153.282729 eV Core-core repulsion = 14738.631906 eV Total energy + Delta-G solvation = -3414.650823 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.065 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.84794 -48.00280 -40.71164 -38.20713 -37.44983 -35.80424 -33.83118 -30.29640 -30.03396 -26.63611 -26.12191 -22.97539 -22.58973 -20.03950 -19.09703 -18.82169 -18.60496 -18.38601 -17.57591 -16.76092 -16.57394 -16.12369 -15.42873 -14.98672 -14.91016 -14.80380 -14.36866 -14.14815 -13.89519 -13.42458 -13.21280 -12.96003 -12.90580 -12.76232 -12.40347 -12.03544 -11.63043 -11.28940 -10.83392 -10.54581 -9.23270 -8.61908 -8.36693 -6.06321 0.58953 0.95654 1.41382 1.50682 1.56342 2.24802 2.34952 2.78333 2.89686 3.28639 3.57433 3.85420 3.94671 3.98789 4.52057 4.79624 4.94086 5.14983 5.32116 5.49505 5.71135 5.87284 6.04293 6.32699 6.50660 6.81864 6.95857 6.97415 7.26998 7.38723 8.41946 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.032367 B = 0.008157 C = 0.007167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.866006 B = 3431.726146 C = 3905.590268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.031 3.969 3 Si 0.982 3.018 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.262 1.262 7 C -0.484 4.484 8 H 0.072 0.928 9 C 0.023 3.977 10 C -0.114 4.114 11 C -0.176 4.176 12 C 0.131 3.869 13 N -0.865 5.865 14 C -0.024 4.024 15 O -0.327 6.327 16 C 0.387 3.613 17 F -0.219 7.219 18 F -0.221 7.221 19 C 0.008 3.992 20 O -0.490 6.490 21 H 0.286 0.714 22 H 0.115 0.885 23 H 0.127 0.873 24 H 0.401 0.599 25 H 0.395 0.605 26 H 0.222 0.778 27 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.808 -9.084 1.648 9.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.181 4.181 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.197 1.197 6 H -0.187 1.187 7 C -0.514 4.514 8 H 0.090 0.910 9 C 0.019 3.981 10 C -0.134 4.134 11 C -0.198 4.198 12 C 0.027 3.973 13 N -0.409 5.409 14 C -0.072 4.072 15 O -0.247 6.247 16 C 0.298 3.702 17 F -0.201 7.201 18 F -0.203 7.203 19 C -0.039 4.039 20 O -0.298 6.298 21 H 0.096 0.904 22 H 0.133 0.867 23 H 0.144 0.856 24 H 0.230 0.770 25 H 0.224 0.776 26 H 0.237 0.763 27 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 0.313 -8.923 1.228 9.012 hybrid contribution 0.165 0.669 0.079 0.694 sum 0.477 -8.253 1.307 8.370 Atomic orbital electron populations 1.69917 1.08754 1.30175 1.37684 1.26656 0.95511 1.04238 0.91716 0.85168 0.79356 0.76469 0.78719 1.18387 1.19687 1.18663 1.19407 0.98283 0.92117 1.41628 0.91028 1.18053 0.94680 0.92386 0.92981 1.20949 0.97098 0.97416 0.97944 1.20261 1.02935 0.90698 1.05925 1.17500 0.92881 0.88202 0.98671 1.41710 1.36091 1.04621 1.58456 1.18149 1.00583 0.83362 1.05130 1.86550 1.65392 1.34461 1.38257 1.24490 0.75782 0.93022 0.76950 1.93014 1.35469 1.96262 1.95325 1.93063 1.93064 1.72722 1.61485 1.18770 0.94616 0.91180 0.99302 1.84731 1.15502 1.95815 1.33778 0.90383 0.86731 0.85557 0.76960 0.77635 0.76267 0.77222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.67 10.98 21.81 0.24 -44.44 15 2 C 0.03 1.62 5.12 85.21 0.44 2.06 15 3 Si 0.98 39.43 29.60 68.60 2.03 41.46 15 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 15 5 H -0.27 -10.63 7.11 99.48 0.71 -9.92 15 6 H -0.26 -9.94 7.11 99.48 0.71 -9.23 15 7 C -0.48 -26.78 8.70 23.33 0.20 -26.57 15 8 H 0.07 3.89 7.65 -2.91 -0.02 3.87 15 9 C 0.02 1.24 5.58 -21.18 -0.12 1.13 15 10 C -0.11 -5.91 8.62 22.47 0.19 -5.71 15 11 C -0.18 -7.88 9.80 22.14 0.22 -7.66 15 12 C 0.13 5.55 6.54 38.63 0.25 5.80 15 13 N -0.87 -27.80 8.60 -50.85 -0.44 -28.23 15 14 C -0.02 -1.11 5.35 22.62 0.12 -0.99 15 15 O -0.33 -12.37 9.34 -80.66 -0.75 -13.12 15 16 C 0.39 12.27 6.35 113.37 0.72 12.99 15 17 F -0.22 -7.38 15.78 44.97 0.71 -6.67 15 18 F -0.22 -8.89 16.42 44.97 0.74 -8.15 15 19 C 0.01 0.42 6.48 23.06 0.15 0.57 15 20 O -0.49 -23.27 11.99 -77.24 -0.93 -24.19 15 21 H 0.29 13.76 8.30 -92.71 -0.77 12.99 15 22 H 0.11 6.13 6.17 -2.91 -0.02 6.11 15 23 H 0.13 4.82 8.06 -2.91 -0.02 4.80 15 24 H 0.40 10.67 8.83 -92.71 -0.82 9.85 15 25 H 0.40 11.55 7.37 -92.70 -0.68 10.87 15 26 H 0.22 3.96 8.14 -2.39 -0.02 3.94 15 27 H 0.37 14.32 9.06 -74.06 -0.67 13.65 15 Total: -1.00 -67.24 250.16 2.87 -64.37 By element: Atomic # 1 Polarization: 38.28 SS G_CDS: -0.91 Total: 37.37 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: 2.18 Total: -18.39 kcal Atomic # 7 Polarization: -72.47 SS G_CDS: -0.20 Total: -72.67 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -1.68 Total: -37.32 kcal Atomic # 9 Polarization: -16.27 SS G_CDS: 1.45 Total: -14.82 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -67.24 2.87 -64.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718019.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.676 kcal (2) G-P(sol) polarization free energy of solvation -67.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds