Wall clock time and date at job start Mon Mar 30 2020 03:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47213 * 2 1 4 4 C 1.36938 * 120.00036 * 274.50170 * 3 2 1 5 5 H 1.08004 * 120.00414 * 146.29950 * 4 3 2 6 6 C 1.38812 * 119.99892 * 326.29123 * 4 3 2 7 7 N 1.31617 * 120.00083 * 336.52669 * 6 4 3 8 8 Si 1.86797 * 120.00275 * 156.52532 * 6 4 3 9 9 H 1.48505 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47202 * 119.99683 * 8 6 4 11 11 H 1.48492 * 109.47633 * 240.00201 * 8 6 4 12 12 S 1.65598 * 120.00024 * 94.49310 * 3 2 1 13 13 O 1.42106 * 106.39868 * 23.54769 * 12 3 2 14 14 O 1.42102 * 106.39932 * 156.45895 * 12 3 2 15 15 C 1.76194 * 107.22230 * 270.00183 * 12 3 2 16 16 N 1.29261 * 123.51021 * 109.72374 * 15 12 3 17 17 C 1.47392 * 106.32317 * 179.97438 * 16 15 12 18 18 C 1.51655 * 103.16109 * 0.32481 * 17 16 15 19 19 N 1.29517 * 105.39041 * 359.80576 * 18 17 16 20 20 H 1.09002 * 109.47137 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.46929 * 299.99816 * 1 2 3 22 22 H 1.09004 * 109.47280 * 59.99767 * 1 2 3 23 23 H 1.08998 * 109.46929 * 240.00184 * 2 1 3 24 24 H 1.08994 * 109.47187 * 120.00085 * 2 1 3 25 25 H 0.97001 * 120.00240 * 179.97438 * 7 6 4 26 26 H 1.08993 * 110.84595 * 241.82982 * 17 16 15 27 27 H 1.09000 * 110.65780 * 118.72865 * 17 16 15 28 28 H 1.07992 * 127.30768 * 179.82756 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1589 2.0578 -1.1823 5 1 1.9799 3.1222 -1.2199 6 6 2.5314 1.3755 -2.3323 7 7 3.1833 0.2359 -2.2394 8 14 2.1077 2.0748 -4.0118 9 1 1.3786 3.3576 -3.8443 10 1 3.3570 2.3126 -4.7786 11 1 1.2511 1.1106 -4.7478 12 16 2.4003 2.1244 1.4297 13 8 2.6901 1.0867 2.3564 14 8 3.3192 3.1602 1.1105 15 6 0.9388 2.9177 2.0120 16 7 0.2728 2.5176 3.0450 17 6 -0.8649 3.4436 3.1886 18 6 -0.6771 4.4036 2.0297 19 7 0.3938 4.0029 1.4214 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 3.4433 -0.2411 -3.0430 26 1 -0.8158 3.9739 4.1395 27 1 -1.8101 2.9087 3.0959 28 1 -1.3033 5.2434 1.7674 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725659221.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:45 Heat of formation + Delta-G solvation = 7.847365 kcal Electronic energy + Delta-G solvation = -16453.360188 eV Core-core repulsion = 13633.683936 eV Total energy + Delta-G solvation = -2819.676251 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 245.062 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.82252 -36.16382 -35.90228 -34.74202 -31.69166 -31.63317 -29.35459 -29.25355 -24.60986 -22.40755 -21.64270 -21.12712 -18.37327 -17.24174 -16.55806 -16.26731 -15.46904 -15.02336 -14.61314 -14.39244 -14.14268 -13.44496 -12.83822 -12.38062 -12.03355 -11.80560 -11.29107 -11.16246 -11.05732 -10.99170 -10.92751 -10.84305 -10.65388 -10.37219 -10.18130 -10.01675 -9.80655 -9.75637 -9.09493 -7.76366 -6.27544 -3.93639 0.61018 1.29339 2.80605 3.21465 3.30360 3.36528 3.85600 4.09340 4.23127 4.38896 4.66895 5.00862 5.04498 5.06832 5.21278 5.61913 6.01990 6.12062 6.24128 6.33360 6.36721 6.59285 6.89895 7.28417 7.43859 7.64189 7.77818 8.46497 8.98222 9.37188 10.74588 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.027638 B = 0.009995 C = 0.009314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.859157 B = 2800.824217 C = 3005.501336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.111 3.889 3 N -0.830 5.830 4 C -0.272 4.272 5 H 0.100 0.900 6 C 0.035 3.965 7 N -0.855 5.855 8 Si 0.920 3.080 9 H -0.266 1.266 10 H -0.281 1.281 11 H -0.281 1.281 12 S 2.634 3.366 13 O -0.972 6.972 14 O -0.947 6.947 15 C -0.230 4.230 16 N -0.405 5.405 17 C -0.064 4.064 18 C 0.126 3.874 19 N -0.456 5.456 20 H 0.050 0.950 21 H 0.030 0.970 22 H 0.059 0.941 23 H 0.120 0.880 24 H 0.062 0.938 25 H 0.268 0.732 26 H 0.148 0.852 27 H 0.149 0.851 28 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.939 4.112 4.554 11.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.016 4.016 3 N -0.663 5.663 4 C -0.410 4.410 5 H 0.118 0.882 6 C -0.172 4.172 7 N -0.495 5.495 8 Si 0.746 3.254 9 H -0.190 1.190 10 H -0.207 1.207 11 H -0.207 1.207 12 S 2.723 3.277 13 O -0.961 6.961 14 O -0.936 6.936 15 C -0.587 4.587 16 N -0.119 5.119 17 C -0.198 4.198 18 C -0.085 4.085 19 N -0.166 5.166 20 H 0.069 0.931 21 H 0.050 0.950 22 H 0.078 0.922 23 H 0.137 0.863 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.165 0.835 27 H 0.166 0.834 28 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -8.484 3.439 5.141 10.499 hybrid contribution -1.584 0.862 -0.437 1.855 sum -10.068 4.301 4.704 11.916 Atomic orbital electron populations 1.22171 0.98856 1.00164 1.00858 1.21442 0.91535 0.83578 1.05084 1.52632 1.76374 1.20600 1.16740 1.19376 1.43250 0.94770 0.83587 0.88216 1.25396 0.95003 0.96893 0.99927 1.69985 1.33503 1.16440 1.29583 0.85983 0.78456 0.79236 0.81715 1.19002 1.20692 1.20669 1.05818 0.72720 0.74105 0.75103 1.93459 1.81454 1.54949 1.66221 1.93477 1.56578 1.60059 1.83471 1.39260 1.20319 1.01095 0.98065 1.75385 1.02373 1.20571 1.13580 1.24402 0.99016 0.94871 1.01505 1.28567 0.92685 0.96599 0.90634 1.70028 1.08624 1.09395 1.28583 0.93106 0.95042 0.92188 0.86276 0.91996 0.92177 0.83507 0.83363 0.77656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 10.22 37.16 0.38 -2.77 15 2 C 0.11 2.56 6.00 -4.04 -0.02 2.54 15 3 N -0.83 -20.94 2.84 -59.91 -0.17 -21.11 15 4 C -0.27 -7.17 8.89 -15.06 -0.13 -7.30 15 5 H 0.10 2.62 7.93 -52.48 -0.42 2.20 15 6 C 0.04 0.91 4.98 -17.43 -0.09 0.82 15 7 N -0.85 -22.70 11.28 55.49 0.63 -22.08 15 8 Si 0.92 19.92 29.61 -169.99 -5.03 14.89 15 9 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 11 H -0.28 -5.94 7.11 56.52 0.40 -5.54 15 12 S 2.63 65.44 5.83 -107.50 -0.63 64.82 15 13 O -0.97 -25.25 16.46 -57.17 -0.94 -26.19 15 14 O -0.95 -25.90 17.23 -57.17 -0.99 -26.88 15 15 C -0.23 -4.85 7.91 -91.41 -0.72 -5.57 15 16 N -0.41 -7.64 11.78 -61.99 -0.73 -8.37 15 17 C -0.06 -0.78 7.99 -4.24 -0.03 -0.81 15 18 C 0.13 1.58 12.60 -12.78 -0.16 1.42 15 19 N -0.46 -8.63 11.04 -10.42 -0.12 -8.75 15 20 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 21 H 0.03 0.59 8.14 -51.93 -0.42 0.17 15 22 H 0.06 1.18 8.14 -51.93 -0.42 0.76 15 23 H 0.12 2.94 5.31 -51.93 -0.28 2.66 15 24 H 0.06 1.41 6.92 -51.93 -0.36 1.05 15 25 H 0.27 6.63 8.31 -40.82 -0.34 6.29 15 26 H 0.15 1.35 8.14 -51.93 -0.42 0.93 15 27 H 0.15 1.40 8.14 -51.93 -0.42 0.97 15 28 H 0.21 1.41 8.06 -52.49 -0.42 0.98 15 LS Contribution 263.23 15.07 3.97 3.97 Total: -1.00 -33.92 263.23 -7.52 -41.44 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -2.72 Total: -0.05 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -0.78 Total: -11.68 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: -0.39 Total: -60.31 kcal Atomic # 8 Polarization: -51.15 SS G_CDS: -1.93 Total: -53.07 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.03 Total: 14.89 kcal Atomic # 16 Polarization: 65.44 SS G_CDS: -0.63 Total: 64.82 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -33.92 -7.52 -41.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659221.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.288 kcal (2) G-P(sol) polarization free energy of solvation -33.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds