Wall clock time and date at job start Mon Mar 30 2020 03:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47213 * 2 1 4 4 C 1.36938 * 120.00036 * 274.50170 * 3 2 1 5 5 H 1.08004 * 120.00414 * 146.29950 * 4 3 2 6 6 C 1.38812 * 119.99892 * 326.29123 * 4 3 2 7 7 N 1.31617 * 120.00083 * 336.52669 * 6 4 3 8 8 Si 1.86797 * 120.00275 * 156.52532 * 6 4 3 9 9 H 1.48505 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47202 * 119.99683 * 8 6 4 11 11 H 1.48492 * 109.47633 * 240.00201 * 8 6 4 12 12 S 1.65598 * 120.00024 * 94.49310 * 3 2 1 13 13 O 1.42106 * 106.39868 * 23.54769 * 12 3 2 14 14 O 1.42102 * 106.39932 * 156.45895 * 12 3 2 15 15 C 1.76194 * 107.22230 * 270.00183 * 12 3 2 16 16 N 1.29261 * 123.51021 * 109.72374 * 15 12 3 17 17 C 1.47392 * 106.32317 * 179.97438 * 16 15 12 18 18 C 1.51655 * 103.16109 * 0.32481 * 17 16 15 19 19 N 1.29517 * 105.39041 * 359.80576 * 18 17 16 20 20 H 1.09002 * 109.47137 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.46929 * 299.99816 * 1 2 3 22 22 H 1.09004 * 109.47280 * 59.99767 * 1 2 3 23 23 H 1.08998 * 109.46929 * 240.00184 * 2 1 3 24 24 H 1.08994 * 109.47187 * 120.00085 * 2 1 3 25 25 H 0.97001 * 120.00240 * 179.97438 * 7 6 4 26 26 H 1.08993 * 110.84595 * 241.82982 * 17 16 15 27 27 H 1.09000 * 110.65780 * 118.72865 * 17 16 15 28 28 H 1.07992 * 127.30768 * 179.82756 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1589 2.0578 -1.1823 5 1 1.9799 3.1222 -1.2199 6 6 2.5314 1.3755 -2.3323 7 7 3.1833 0.2359 -2.2394 8 14 2.1077 2.0748 -4.0118 9 1 1.3786 3.3576 -3.8443 10 1 3.3570 2.3126 -4.7786 11 1 1.2511 1.1106 -4.7478 12 16 2.4003 2.1244 1.4297 13 8 2.6901 1.0867 2.3564 14 8 3.3192 3.1602 1.1105 15 6 0.9388 2.9177 2.0120 16 7 0.2728 2.5176 3.0450 17 6 -0.8649 3.4436 3.1886 18 6 -0.6771 4.4036 2.0297 19 7 0.3938 4.0029 1.4214 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 3.4433 -0.2411 -3.0430 26 1 -0.8158 3.9739 4.1395 27 1 -1.8101 2.9087 3.0959 28 1 -1.3033 5.2434 1.7674 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725659221.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:45 Heat of formation + Delta-G solvation = -21.264425 kcal Electronic energy + Delta-G solvation = -16454.622570 eV Core-core repulsion = 13633.683936 eV Total energy + Delta-G solvation = -2820.938633 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 245.062 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.04780 -38.13558 -37.78732 -36.74317 -33.62032 -32.90937 -31.03190 -30.50063 -26.54368 -23.84855 -23.15742 -22.51674 -20.25737 -18.99073 -18.23477 -18.09445 -16.76906 -16.65394 -16.27568 -15.73441 -15.59195 -15.23691 -14.57860 -14.18028 -13.76135 -13.19300 -13.11021 -12.94912 -12.91871 -12.66655 -12.64690 -12.56092 -12.17323 -12.11245 -11.94452 -11.63915 -11.22806 -11.02005 -10.97155 -9.68907 -8.21447 -5.94733 -0.66498 -0.45336 1.50266 1.51175 1.55166 1.68595 2.29486 2.55778 2.62764 2.89965 3.08152 3.35287 3.84149 4.07456 4.21056 4.25299 4.33322 4.63812 4.65760 4.87853 5.08707 5.10524 5.22490 5.47751 5.53674 5.88324 6.47772 6.52419 7.01702 7.41012 8.81210 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.027638 B = 0.009995 C = 0.009314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.859157 B = 2800.824217 C = 3005.501336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.105 3.895 3 N -0.840 5.840 4 C -0.292 4.292 5 H 0.092 0.908 6 C -0.005 4.005 7 N -0.885 5.885 8 Si 0.985 3.015 9 H -0.259 1.259 10 H -0.282 1.282 11 H -0.269 1.269 12 S 2.640 3.360 13 O -1.001 7.001 14 O -0.991 6.991 15 C -0.246 4.246 16 N -0.428 5.428 17 C -0.068 4.068 18 C 0.166 3.834 19 N -0.520 5.520 20 H 0.079 0.921 21 H 0.034 0.966 22 H 0.056 0.944 23 H 0.104 0.896 24 H 0.054 0.946 25 H 0.273 0.727 26 H 0.190 0.810 27 H 0.190 0.810 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.937 5.254 4.645 14.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 N -0.673 5.673 4 C -0.430 4.430 5 H 0.110 0.890 6 C -0.210 4.210 7 N -0.526 5.526 8 Si 0.808 3.192 9 H -0.183 1.183 10 H -0.208 1.208 11 H -0.194 1.194 12 S 2.735 3.265 13 O -0.989 6.989 14 O -0.980 6.980 15 C -0.609 4.609 16 N -0.145 5.145 17 C -0.201 4.201 18 C -0.041 4.041 19 N -0.233 5.233 20 H 0.098 0.902 21 H 0.054 0.946 22 H 0.075 0.925 23 H 0.121 0.879 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.206 0.794 27 H 0.206 0.794 28 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -11.443 4.553 5.215 13.374 hybrid contribution -0.805 0.572 -0.282 1.027 sum -12.248 5.125 4.933 14.164 Atomic orbital electron populations 1.22038 0.95842 1.02046 1.00834 1.21497 0.94072 0.82663 1.03878 1.52689 1.76843 1.21255 1.16551 1.19498 1.44224 0.94767 0.84465 0.89014 1.26259 0.94371 0.97160 1.03162 1.70073 1.34145 1.17578 1.30805 0.85016 0.78185 0.78963 0.77055 1.18319 1.20762 1.19370 1.04974 0.73376 0.73407 0.74709 1.93407 1.82936 1.55961 1.66631 1.93410 1.59607 1.60901 1.84035 1.37926 1.20133 1.03024 0.99850 1.75286 1.04214 1.22529 1.12464 1.24835 0.97908 0.94308 1.03062 1.29591 0.90012 0.96150 0.88321 1.70025 1.12004 1.10257 1.31018 0.90198 0.94644 0.92494 0.87862 0.92720 0.91708 0.79416 0.79368 0.71920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.68 10.22 71.98 0.74 -4.95 15 2 C 0.11 4.99 6.00 86.38 0.52 5.51 15 3 N -0.84 -43.65 2.84 -343.45 -0.98 -44.62 15 4 C -0.29 -15.76 8.89 84.03 0.75 -15.02 15 5 H 0.09 4.97 7.93 -2.91 -0.02 4.95 15 6 C 0.00 -0.24 4.98 84.86 0.42 0.18 15 7 N -0.89 -47.94 11.28 21.65 0.24 -47.70 15 8 Si 0.98 40.76 29.61 68.60 2.03 42.79 15 9 H -0.26 -10.36 7.11 99.48 0.71 -9.66 15 10 H -0.28 -11.62 7.11 99.48 0.71 -10.91 15 11 H -0.27 -10.52 7.11 99.48 0.71 -9.81 15 12 S 2.64 136.06 5.83 -56.49 -0.33 135.73 15 13 O -1.00 -54.13 16.46 -128.00 -2.11 -56.23 15 14 O -0.99 -56.88 17.23 -128.00 -2.21 -59.09 15 15 C -0.25 -10.31 7.91 180.62 1.43 -8.88 15 16 N -0.43 -15.38 11.78 -350.04 -4.12 -19.50 15 17 C -0.07 -1.34 7.99 85.77 0.69 -0.65 15 18 C 0.17 3.41 12.60 88.75 1.12 4.53 15 19 N -0.52 -18.86 11.04 -186.89 -2.06 -20.92 15 20 H 0.08 2.54 8.14 -2.39 -0.02 2.52 15 21 H 0.03 1.30 8.14 -2.39 -0.02 1.28 15 22 H 0.06 2.19 8.14 -2.39 -0.02 2.17 15 23 H 0.10 5.24 5.31 -2.39 -0.01 5.23 15 24 H 0.05 2.59 6.92 -2.39 -0.02 2.58 15 25 H 0.27 13.68 8.31 -92.71 -0.77 12.91 15 26 H 0.19 2.34 8.14 -2.39 -0.02 2.32 15 27 H 0.19 2.40 8.14 -2.39 -0.02 2.38 15 28 H 0.27 1.86 8.06 -2.91 -0.02 1.83 15 Total: -1.00 -78.32 263.23 -2.70 -81.02 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 1.18 Total: 7.81 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: 5.66 Total: -19.28 kcal Atomic # 7 Polarization: -125.83 SS G_CDS: -6.92 Total: -132.75 kcal Atomic # 8 Polarization: -111.01 SS G_CDS: -4.31 Total: -115.32 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Atomic # 16 Polarization: 136.06 SS G_CDS: -0.33 Total: 135.73 kcal Total: -78.32 -2.70 -81.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659221.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.751 kcal (2) G-P(sol) polarization free energy of solvation -78.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds