Wall clock time and date at job start Mon Mar 30 2020 03:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.08998 * 110.12929 * 305.69911 * 3 2 1 5 5 N 1.46854 * 110.15057 * 67.39056 * 3 2 1 6 6 C 1.29058 * 107.22427 * 119.12489 * 5 3 2 7 7 C 1.47156 * 109.79011 * 0.02562 * 6 5 3 8 8 S 1.76199 * 125.10926 * 180.02562 * 7 6 5 9 9 O 1.42100 * 106.40453 * 43.51156 * 8 7 6 10 10 O 1.42092 * 106.40213 * 176.43567 * 8 7 6 11 11 N 1.65601 * 107.21466 * 289.97120 * 8 7 6 12 12 C 1.36939 * 119.99913 * 65.00321 * 11 8 7 13 13 H 1.08001 * 120.00241 * 359.97438 * 12 11 8 14 14 C 1.38817 * 119.99886 * 179.97438 * 12 11 8 15 15 N 1.31613 * 119.99924 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99481 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47416 * 60.00418 * 16 14 12 18 18 H 1.48508 * 109.46512 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47375 * 299.99460 * 16 14 12 20 20 N 1.29214 * 109.80358 * 0.03765 * 7 6 5 21 21 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 23 23 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 24 24 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 25 25 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 26 26 H 1.08006 * 125.11097 * 179.97438 * 6 5 3 27 27 H 0.97001 * 120.00280 * 245.00194 * 11 8 7 28 28 H 0.96998 * 119.99567 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6019 1.9952 -0.8311 5 7 1.7088 2.0961 1.2727 6 6 2.8225 2.4395 1.8271 7 6 3.9497 2.0416 0.9689 8 16 5.6507 2.3149 1.3387 9 8 5.8220 1.9813 2.7093 10 8 6.3921 1.7042 0.2916 11 7 5.9233 3.9437 1.2162 12 6 5.3100 4.8077 2.0836 13 1 4.6481 4.4270 2.8474 14 6 5.5389 6.1731 1.9813 15 7 6.3452 6.6371 1.0502 16 14 4.7016 7.3517 3.1642 17 1 5.1024 7.0241 4.5560 18 1 5.1083 8.7441 2.8462 19 1 3.2283 7.2240 3.0302 20 7 3.5052 1.4619 -0.0969 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 2.9136 2.9440 2.7777 27 1 6.5175 4.2858 0.5300 28 1 6.5054 7.5911 0.9790 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725659560.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:55 Heat of formation + Delta-G solvation = -18.291535 kcal Electronic energy + Delta-G solvation = -15789.555665 eV Core-core repulsion = 12968.745946 eV Total energy + Delta-G solvation = -2820.809719 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 245.062 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.33927 -36.05148 -34.89646 -34.71366 -33.60891 -31.74776 -31.23905 -27.59449 -24.78104 -23.31262 -21.09538 -20.39230 -18.39483 -18.19901 -17.00905 -16.35839 -15.29925 -15.10411 -14.72073 -14.47043 -14.14863 -13.65554 -13.07963 -12.25646 -12.16907 -11.98113 -11.56277 -11.46988 -11.24318 -11.09609 -11.03021 -10.92956 -10.74708 -10.73904 -10.38231 -10.24361 -10.17300 -10.12131 -9.87895 -8.54210 -6.77923 -4.12463 0.99320 1.37903 2.71119 3.07860 3.10763 3.13128 3.86842 4.01074 4.29055 4.55798 4.66708 4.82069 4.90362 4.95289 5.12533 5.26953 5.57561 5.63233 5.75176 5.79568 5.94268 6.14394 6.30991 6.65442 6.79546 7.19056 7.53630 8.39154 8.48741 8.94568 10.35395 Molecular weight = 245.06amu Principal moments of inertia in cm(-1) A = 0.026031 B = 0.008191 C = 0.006877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.382747 B = 3417.437731 C = 4070.748428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C 0.108 3.892 4 H 0.140 0.860 5 N -0.473 5.473 6 C 0.150 3.850 7 C -0.409 4.409 8 S 2.571 3.429 9 O -0.958 6.958 10 O -0.986 6.986 11 N -0.921 5.921 12 C -0.257 4.257 13 H 0.112 0.888 14 C 0.033 3.967 15 N -0.852 5.852 16 Si 0.928 3.072 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.268 1.268 20 N -0.362 5.362 21 H 0.058 0.942 22 H 0.066 0.934 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.195 0.805 27 H 0.413 0.587 28 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.324 -3.873 0.380 8.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.093 4.093 4 H 0.157 0.843 5 N -0.187 5.187 6 C -0.061 4.061 7 C -0.673 4.673 8 S 2.657 3.343 9 O -0.947 6.947 10 O -0.973 6.973 11 N -0.672 5.672 12 C -0.403 4.403 13 H 0.130 0.870 14 C -0.178 4.178 15 N -0.492 5.492 16 Si 0.753 3.247 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.193 1.193 20 N -0.077 5.077 21 H 0.077 0.923 22 H 0.085 0.915 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.099 0.901 26 H 0.211 0.789 27 H 0.249 0.751 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.790 -5.276 -0.387 9.416 hybrid contribution -0.645 1.312 0.139 1.468 sum -8.435 -3.964 -0.248 9.324 Atomic orbital electron populations 1.21717 0.94097 1.01776 1.02754 1.21227 0.96750 0.91014 1.03312 1.25234 0.90144 0.98464 0.95454 0.84334 1.74657 1.27388 1.10159 1.06456 1.26576 0.87629 0.92791 0.99065 1.40228 1.30018 1.00200 0.96816 1.09848 0.74972 0.75144 0.74293 1.93489 1.84585 1.83760 1.32864 1.93414 1.70311 1.76788 1.56835 1.52386 1.48793 1.25144 1.40887 1.19593 1.26247 0.88558 1.05948 0.87043 1.25469 0.96789 0.97778 0.97810 1.69689 1.32116 1.16044 1.31373 0.85949 0.79623 0.78818 0.80332 1.18918 1.20433 1.19291 1.74914 1.08978 1.05932 1.17918 0.92281 0.91502 0.92607 0.91457 0.90063 0.78870 0.75117 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.82 37.16 0.37 -1.30 15 2 C -0.08 -1.18 5.98 -26.73 -0.16 -1.34 15 3 C 0.11 1.84 4.20 -126.87 -0.53 1.31 15 4 H 0.14 2.21 8.14 -51.93 -0.42 1.79 15 5 N -0.47 -8.33 11.07 -55.42 -0.61 -8.94 15 6 C 0.15 2.70 12.01 -15.10 -0.18 2.52 15 7 C -0.41 -8.21 7.19 -15.03 -0.11 -8.32 15 8 S 2.57 55.94 5.85 -107.50 -0.63 55.31 15 9 O -0.96 -22.12 17.72 -57.17 -1.01 -23.14 15 10 O -0.99 -23.82 17.96 -57.17 -1.03 -24.85 15 11 N -0.92 -20.68 5.75 31.50 0.18 -20.50 15 12 C -0.26 -5.80 9.63 -15.06 -0.15 -5.94 15 13 H 0.11 2.26 7.33 -52.49 -0.38 1.87 15 14 C 0.03 0.76 5.50 -17.43 -0.10 0.66 15 15 N -0.85 -20.57 13.06 55.49 0.72 -19.84 15 16 Si 0.93 17.55 29.55 -169.99 -5.02 12.53 15 17 H -0.26 -4.93 7.11 56.52 0.40 -4.52 15 18 H -0.28 -5.31 7.11 56.52 0.40 -4.91 15 19 H -0.27 -4.95 7.11 56.52 0.40 -4.55 15 20 N -0.36 -7.23 11.41 -54.51 -0.62 -7.86 15 21 H 0.06 0.57 8.14 -51.93 -0.42 0.14 15 22 H 0.07 0.83 7.86 -51.93 -0.41 0.42 15 23 H 0.05 0.59 8.14 -51.93 -0.42 0.16 15 24 H 0.07 0.99 8.14 -51.93 -0.42 0.57 15 25 H 0.08 1.06 8.14 -51.93 -0.42 0.63 15 26 H 0.19 2.90 7.62 -52.48 -0.40 2.50 15 27 H 0.41 9.45 8.02 -34.47 -0.28 9.18 15 28 H 0.28 6.38 8.31 -40.82 -0.34 6.04 15 LS Contribution 267.89 15.07 4.04 4.04 Total: -1.00 -28.78 267.89 -7.56 -36.34 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -2.72 Total: 9.33 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: -0.86 Total: -12.42 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.33 Total: -57.14 kcal Atomic # 8 Polarization: -45.95 SS G_CDS: -2.04 Total: -47.99 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.02 Total: 12.53 kcal Atomic # 16 Polarization: 55.94 SS G_CDS: -0.63 Total: 55.31 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.78 -7.56 -36.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725659560.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.050 kcal (2) G-P(sol) polarization free energy of solvation -28.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds