Wall clock time and date at job start Mon Mar 30 2020 03:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86799 * 120.00237 * 2 1 4 4 H 1.48496 * 109.47017 * 270.00468 * 3 2 1 5 5 H 1.48500 * 109.46995 * 30.00342 * 3 2 1 6 6 H 1.48499 * 109.46971 * 150.00163 * 3 2 1 7 7 C 1.40048 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99821 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00373 * 359.97438 * 7 2 1 10 10 O 1.21693 * 119.99667 * 0.02562 * 9 7 2 11 11 N 1.34776 * 120.00033 * 179.97438 * 9 7 2 12 12 C 1.46501 * 119.99708 * 179.97438 * 11 9 7 13 13 C 1.50700 * 109.46963 * 180.02562 * 12 11 9 14 14 C 1.33404 * 122.54400 * 259.98192 * 13 12 11 15 15 S 1.75882 * 109.60688 * 180.02562 * 14 13 12 16 16 C 1.75882 * 90.97990 * 359.97438 * 15 14 13 17 17 C 1.33438 * 109.59778 * 0.02562 * 16 15 14 18 18 Cl 1.73602 * 122.54855 * 180.02562 * 17 16 15 19 19 H 0.97005 * 119.99350 * 359.97438 * 1 2 3 20 20 H 0.96997 * 119.99788 * 0.02562 * 11 9 7 21 21 H 1.09008 * 109.46765 * 60.00847 * 12 11 9 22 22 H 1.08996 * 109.47209 * 300.00453 * 12 11 9 23 23 H 1.08003 * 125.19990 * 359.75264 * 14 13 12 24 24 H 1.07998 * 125.19953 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4882 2.0464 -1.4000 5 1 1.4383 2.6526 0.7001 6 1 3.5384 1.4400 0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0010 9 6 1.2750 -2.4806 -0.0005 10 8 0.0581 -2.4805 -0.0005 11 7 1.9489 -3.6478 -0.0016 12 6 1.2163 -4.9164 -0.0010 13 6 2.1955 -6.0619 -0.0018 14 6 2.5123 -6.7345 -1.1094 15 16 3.6780 -7.9934 -0.7225 16 6 3.6704 -7.5216 0.9719 17 6 2.8347 -6.4963 1.1472 18 17 2.5699 -5.7618 2.6978 19 1 -0.4849 0.8401 0.0004 20 1 2.9188 -3.6477 -0.0020 21 1 0.5887 -4.9740 -0.8904 22 1 0.5906 -4.9743 0.8896 23 1 2.1107 -6.5390 -2.0928 24 1 4.2531 -7.9902 1.7512 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923342609.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:35 Heat of formation + Delta-G solvation = -15.539740 kcal Electronic energy + Delta-G solvation = -12966.368916 eV Core-core repulsion = 10418.261842 eV Total energy + Delta-G solvation = -2548.107073 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 245.002 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.72663 -36.92773 -35.93304 -33.06495 -32.17140 -29.77022 -27.05618 -25.23978 -22.81970 -19.70452 -19.00227 -17.89615 -17.02660 -15.62558 -15.25525 -14.41682 -14.03246 -13.85164 -13.35953 -13.12644 -12.64655 -12.42438 -12.02495 -11.34036 -11.30648 -11.12724 -10.92228 -10.80267 -10.67787 -10.41594 -10.19945 -8.86875 -8.82176 -8.39918 -7.56113 -7.47149 -6.15461 -4.60447 0.83305 1.30817 1.71195 2.44930 2.69799 3.16325 3.23121 3.26862 4.14489 4.61919 4.76296 5.06753 5.19035 5.36971 5.65292 5.78809 5.97773 6.03128 6.45189 6.58909 7.46704 7.95625 8.10575 8.36322 9.05741 9.56608 10.63077 10.81684 Molecular weight = 245.00amu Principal moments of inertia in cm(-1) A = 0.035742 B = 0.005770 C = 0.005562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.206896 B = 4851.747752 C = 5033.152221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.557 3.443 10 O -0.581 6.581 11 N -0.759 5.759 12 C 0.190 3.810 13 C -0.103 4.103 14 C -0.188 4.188 15 S 0.121 5.879 16 C -0.219 4.219 17 C -0.030 4.030 18 Cl -0.039 7.039 19 H 0.268 0.732 20 H 0.381 0.619 21 H 0.060 0.940 22 H 0.064 0.936 23 H 0.174 0.826 24 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.268 -14.017 0.237 16.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.085 0.915 9 C 0.361 3.639 10 O -0.464 6.464 11 N -0.415 5.415 12 C 0.062 3.938 13 C -0.116 4.116 14 C -0.324 4.324 15 S 0.383 5.617 16 C -0.355 4.355 17 C -0.070 4.070 18 Cl -0.010 7.010 19 H 0.078 0.922 20 H 0.212 0.788 21 H 0.078 0.922 22 H 0.082 0.918 23 H 0.192 0.808 24 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 7.903 -14.969 -0.457 16.933 hybrid contribution 0.252 1.831 0.960 2.082 sum 8.155 -13.138 0.502 15.471 Atomic orbital electron populations 1.70029 1.07025 1.27187 1.35487 1.25705 0.94617 1.00247 0.92659 0.86381 0.80173 0.81457 0.78786 1.19775 1.20477 1.18931 1.20861 0.93562 0.89292 1.54303 0.91470 1.18209 0.87167 0.82252 0.76252 1.90601 1.14085 1.86709 1.54980 1.46119 1.08536 1.04017 1.82787 1.19523 0.91297 0.81135 1.01799 1.19054 1.01228 1.00344 0.90963 1.25504 1.03669 1.00549 1.02692 1.84183 1.42511 1.34376 1.00628 1.25458 1.06384 1.02919 1.00711 1.19806 1.00802 0.97342 0.89057 1.98394 1.95625 1.81879 1.25123 0.92156 0.78821 0.92207 0.91833 0.80847 0.81042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.25 11.83 55.55 0.66 -22.59 14 2 C 0.09 2.46 5.50 -17.36 -0.10 2.36 14 3 Si 0.91 20.35 29.56 -169.99 -5.02 15.32 14 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 14 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 14 6 H -0.27 -5.77 7.11 56.52 0.40 -5.36 14 7 C -0.54 -15.50 9.54 -35.63 -0.34 -15.84 14 8 H 0.07 1.77 7.85 -52.49 -0.41 1.35 14 9 C 0.56 15.98 7.75 -12.99 -0.10 15.88 14 10 O -0.58 -18.95 15.02 5.20 0.08 -18.87 14 11 N -0.76 -17.24 5.54 -62.90 -0.35 -17.59 14 12 C 0.19 3.73 5.50 -5.19 -0.03 3.70 14 13 C -0.10 -1.60 5.17 -106.23 -0.55 -2.15 14 14 C -0.19 -2.41 10.95 29.04 0.32 -2.10 14 15 S 0.12 1.26 23.34 -107.50 -2.51 -1.25 14 16 C -0.22 -2.55 11.08 29.05 0.32 -2.23 14 17 C -0.03 -0.44 6.26 -41.17 -0.26 -0.70 14 18 Cl -0.04 -0.60 28.23 -51.86 -1.46 -2.06 14 19 H 0.27 7.34 8.29 -40.82 -0.34 7.00 14 20 H 0.38 7.89 8.44 -40.82 -0.34 7.54 14 21 H 0.06 1.20 8.07 -51.92 -0.42 0.78 14 22 H 0.06 1.35 7.75 -51.93 -0.40 0.94 14 23 H 0.17 1.97 8.06 -52.48 -0.42 1.54 14 24 H 0.17 1.60 8.06 -52.49 -0.42 1.17 14 LS Contribution 253.11 15.07 3.81 3.81 Total: -1.00 -33.53 253.11 -7.09 -40.62 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -1.56 Total: 3.69 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -0.73 Total: -1.07 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.31 Total: -40.18 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: 0.08 Total: -18.87 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.51 Total: -1.25 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.46 Total: -2.06 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -33.53 -7.09 -40.62 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923342609.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.080 kcal (2) G-P(sol) polarization free energy of solvation -33.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds