Wall clock time and date at job start Mon Mar 30 2020 03:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86799 * 120.00237 * 2 1 4 4 H 1.48496 * 109.47017 * 270.00468 * 3 2 1 5 5 H 1.48500 * 109.46995 * 30.00342 * 3 2 1 6 6 H 1.48499 * 109.46971 * 150.00163 * 3 2 1 7 7 C 1.40048 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99821 * 179.97438 * 7 2 1 9 9 C 1.46376 * 120.00373 * 359.97438 * 7 2 1 10 10 O 1.21693 * 119.99667 * 0.02562 * 9 7 2 11 11 N 1.34776 * 120.00033 * 179.97438 * 9 7 2 12 12 C 1.46501 * 119.99708 * 179.97438 * 11 9 7 13 13 C 1.50700 * 109.46963 * 180.02562 * 12 11 9 14 14 C 1.33404 * 122.54400 * 259.98192 * 13 12 11 15 15 S 1.75882 * 109.60688 * 180.02562 * 14 13 12 16 16 C 1.75882 * 90.97990 * 359.97438 * 15 14 13 17 17 C 1.33438 * 109.59778 * 0.02562 * 16 15 14 18 18 Cl 1.73602 * 122.54855 * 180.02562 * 17 16 15 19 19 H 0.97005 * 119.99350 * 359.97438 * 1 2 3 20 20 H 0.96997 * 119.99788 * 0.02562 * 11 9 7 21 21 H 1.09008 * 109.46765 * 60.00847 * 12 11 9 22 22 H 1.08996 * 109.47209 * 300.00453 * 12 11 9 23 23 H 1.08003 * 125.19990 * 359.75264 * 14 13 12 24 24 H 1.07998 * 125.19953 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4882 2.0464 -1.4000 5 1 1.4383 2.6526 0.7001 6 1 3.5384 1.4400 0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0010 9 6 1.2750 -2.4806 -0.0005 10 8 0.0581 -2.4805 -0.0005 11 7 1.9489 -3.6478 -0.0016 12 6 1.2163 -4.9164 -0.0010 13 6 2.1955 -6.0619 -0.0018 14 6 2.5123 -6.7345 -1.1094 15 16 3.6780 -7.9934 -0.7225 16 6 3.6704 -7.5216 0.9719 17 6 2.8347 -6.4963 1.1472 18 17 2.5699 -5.7618 2.6978 19 1 -0.4849 0.8401 0.0004 20 1 2.9188 -3.6477 -0.0020 21 1 0.5887 -4.9740 -0.8904 22 1 0.5906 -4.9743 0.8896 23 1 2.1107 -6.5390 -2.0928 24 1 4.2531 -7.9902 1.7512 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923342609.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:34 Heat of formation + Delta-G solvation = -39.581190 kcal Electronic energy + Delta-G solvation = -12967.411431 eV Core-core repulsion = 10418.261842 eV Total energy + Delta-G solvation = -2549.149589 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 245.002 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.06080 -38.82759 -37.11169 -34.98895 -34.27732 -31.06299 -28.88953 -26.94333 -24.03262 -21.76745 -20.20420 -19.35941 -18.52686 -17.45698 -16.79502 -16.12537 -15.77400 -15.37235 -14.65620 -14.40898 -14.30738 -13.90470 -13.40453 -13.10544 -13.07257 -12.68172 -12.61111 -12.38956 -12.03606 -11.94904 -11.79208 -10.92039 -10.05756 -9.73858 -9.47865 -9.29000 -8.27447 -6.83981 -0.16782 0.35223 0.69605 1.29971 1.41258 1.42543 1.57877 1.65788 2.26741 2.48662 3.31749 3.61417 3.76356 3.94655 4.36395 4.52479 4.69292 4.73736 5.00281 5.27989 5.33177 5.88586 6.20177 6.27386 6.88033 7.54686 8.50187 8.68647 Molecular weight = 245.00amu Principal moments of inertia in cm(-1) A = 0.035742 B = 0.005770 C = 0.005562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.206896 B = 4851.747752 C = 5033.152221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.028 3.972 3 Si 0.998 3.002 4 H -0.260 1.260 5 H -0.273 1.273 6 H -0.250 1.250 7 C -0.571 4.571 8 H 0.085 0.915 9 C 0.542 3.458 10 O -0.632 6.632 11 N -0.744 5.744 12 C 0.196 3.804 13 C -0.128 4.128 14 C -0.191 4.191 15 S 0.211 5.789 16 C -0.210 4.210 17 C -0.057 4.057 18 Cl -0.061 7.061 19 H 0.274 0.726 20 H 0.392 0.608 21 H 0.049 0.951 22 H 0.040 0.960 23 H 0.186 0.814 24 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.898 -14.814 -0.423 18.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.187 4.187 3 Si 0.817 3.183 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.174 1.174 7 C -0.608 4.608 8 H 0.103 0.897 9 C 0.346 3.654 10 O -0.520 6.520 11 N -0.398 5.398 12 C 0.070 3.930 13 C -0.140 4.140 14 C -0.328 4.328 15 S 0.475 5.525 16 C -0.347 4.347 17 C -0.096 4.096 18 Cl -0.033 7.033 19 H 0.084 0.916 20 H 0.225 0.775 21 H 0.067 0.933 22 H 0.058 0.942 23 H 0.203 0.797 24 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 10.584 -15.826 -1.122 19.072 hybrid contribution -0.512 1.876 1.092 2.230 sum 10.071 -13.950 -0.031 17.206 Atomic orbital electron populations 1.70197 1.09495 1.28899 1.36532 1.26978 0.95546 1.04932 0.91241 0.85017 0.78708 0.75076 0.79466 1.18455 1.19781 1.17380 1.21394 0.94627 0.90044 1.54726 0.89656 1.18571 0.86768 0.84127 0.75951 1.90553 1.16190 1.87884 1.57359 1.45757 1.08980 1.04020 1.81065 1.19383 0.92088 0.81478 1.00102 1.18660 1.02316 1.00340 0.92730 1.25781 1.03721 1.00832 1.02462 1.83975 1.39213 1.31067 0.98248 1.25880 1.04737 1.01309 1.02727 1.19800 1.02798 0.99065 0.87946 1.98380 1.95903 1.82508 1.26477 0.91584 0.77520 0.93284 0.94192 0.79661 0.78463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.09 11.83 21.84 0.26 -50.84 14 2 C 0.03 1.59 5.50 85.30 0.47 2.06 14 3 Si 1.00 41.57 29.56 68.60 2.03 43.60 14 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 14 5 H -0.27 -10.97 7.11 99.48 0.71 -10.27 14 6 H -0.25 -9.74 7.11 99.48 0.71 -9.04 14 7 C -0.57 -33.03 9.54 24.83 0.24 -32.80 14 8 H 0.09 4.45 7.85 -2.91 -0.02 4.42 14 9 C 0.54 32.16 7.75 86.36 0.67 32.83 14 10 O -0.63 -43.31 15.02 -4.33 -0.06 -43.37 14 11 N -0.74 -34.74 5.54 -471.13 -2.61 -37.35 14 12 C 0.20 8.00 5.50 85.63 0.47 8.48 14 13 C -0.13 -3.89 5.17 -20.90 -0.11 -4.00 14 14 C -0.19 -4.51 10.95 66.73 0.73 -3.78 14 15 S 0.21 3.56 23.34 -56.49 -1.32 2.24 14 16 C -0.21 -4.26 11.08 66.73 0.74 -3.52 14 17 C -0.06 -1.58 6.26 21.24 0.13 -1.45 14 18 Cl -0.06 -1.91 28.23 -2.72 -0.08 -1.98 14 19 H 0.27 15.41 8.29 -92.70 -0.77 14.65 14 20 H 0.39 16.36 8.44 -92.71 -0.78 15.58 14 21 H 0.05 2.07 8.07 -2.38 -0.02 2.05 14 22 H 0.04 1.80 7.75 -2.39 -0.02 1.78 14 23 H 0.19 3.82 8.06 -2.91 -0.02 3.80 14 24 H 0.20 2.91 8.06 -2.91 -0.02 2.88 14 Total: -1.00 -75.59 253.11 2.02 -73.57 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: 0.46 Total: 16.31 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: 3.34 Total: -2.18 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -2.35 Total: -88.19 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -0.06 Total: -43.37 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -1.32 Total: 2.24 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.08 Total: -1.98 kcal Total: -75.59 2.02 -73.57 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923342609.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.989 kcal (2) G-P(sol) polarization free energy of solvation -75.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds