Wall clock time and date at job start Mon Mar 30 2020 03:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47116 * 2 1 4 4 C 1.50697 * 109.47288 * 240.00259 * 2 1 3 5 5 H 1.08002 * 119.99807 * 240.00769 * 4 2 1 6 6 C 1.37877 * 120.00022 * 59.99674 * 4 2 1 7 7 N 1.31515 * 119.99980 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00046 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46701 * 90.00329 * 8 6 4 10 10 H 1.48495 * 109.47146 * 210.00206 * 8 6 4 11 11 H 1.48497 * 109.46998 * 330.00432 * 8 6 4 12 12 N 1.46500 * 109.46785 * 119.99923 * 2 1 3 13 13 C 1.34523 * 124.46093 * 239.99714 * 12 2 1 14 14 O 1.21442 * 125.71189 * 359.96211 * 13 12 2 15 15 C 1.47816 * 108.58205 * 179.97438 * 13 12 2 16 16 C 1.38568 * 134.30399 * 179.97438 * 15 13 12 17 17 C 1.38612 * 119.71964 * 180.02562 * 16 15 13 18 18 C 1.38235 * 120.45945 * 0.02562 * 17 16 15 19 19 C 1.38607 * 120.45691 * 0.02562 * 18 17 16 20 20 C 1.38562 * 119.72184 * 359.97438 * 19 18 17 21 21 C 1.34526 * 124.46118 * 59.98035 * 12 2 1 22 22 O 1.21444 * 125.70787 * 0.02562 * 21 12 2 23 23 H 1.09006 * 109.47028 * 300.00088 * 1 2 3 24 24 H 1.09005 * 109.46938 * 60.00028 * 1 2 3 25 25 H 1.08999 * 109.47361 * 179.97438 * 1 2 3 26 26 H 0.97004 * 119.99846 * 179.97438 * 7 6 4 27 27 H 1.08001 * 120.13970 * 0.07150 * 16 15 13 28 28 H 1.07994 * 119.76881 * 180.27787 * 17 16 15 29 29 H 1.08001 * 119.76462 * 179.97438 * 18 17 16 30 30 H 1.08005 * 120.13408 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3214 -1.1202 -4.0080 9 1 1.3427 -2.1615 -4.4119 10 1 2.4866 -0.1412 -5.1123 11 1 3.6293 -1.7582 -3.7122 12 7 2.0183 -0.6906 1.1962 13 6 2.7949 -0.1252 2.1379 14 8 3.1967 1.0208 2.1310 15 6 3.0775 -1.1322 3.1824 16 6 3.8032 -1.1249 4.3628 17 6 3.8699 -2.2736 5.1356 18 6 3.2182 -3.4255 4.7365 19 6 2.4895 -3.4479 3.5576 20 6 2.4140 -2.3071 2.7749 21 6 1.7488 -1.9736 1.4977 22 8 1.0730 -2.7314 0.8315 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.7095 1.1619 -3.4844 27 1 4.3140 -0.2276 4.6798 28 1 4.4315 -2.2674 6.0580 29 1 3.2781 -4.3144 5.3470 30 1 1.9821 -4.3507 3.2509 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041227518.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:48 Heat of formation + Delta-G solvation = -18.529350 kcal Electronic energy + Delta-G solvation = -17302.635501 eV Core-core repulsion = 14449.911861 eV Total energy + Delta-G solvation = -2852.723640 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.68022 -38.23853 -37.88339 -35.27117 -33.81630 -31.49033 -31.05339 -28.97290 -25.31352 -24.61921 -23.92914 -21.75598 -21.05708 -19.20089 -17.42852 -16.80661 -16.42191 -15.68227 -15.44239 -14.78324 -14.72012 -14.20993 -13.87721 -13.66410 -13.29035 -12.80849 -12.60715 -12.26032 -11.85149 -11.62354 -11.20963 -10.99510 -10.84881 -10.52311 -10.26079 -9.80386 -9.73830 -9.30273 -9.16910 -9.15251 -8.54355 -8.44333 -6.14860 -4.21959 0.35650 1.04841 2.36908 3.22315 3.28628 3.33918 3.39727 3.67529 3.76023 3.99124 4.36912 4.70944 4.72081 4.93989 5.09113 5.18295 5.28983 5.43498 5.79617 6.07535 6.12206 6.17161 6.43537 6.58619 6.64917 6.83385 6.85951 7.22125 7.55994 7.79378 7.89049 7.92099 8.14707 8.44855 8.79309 9.43608 10.91579 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.033387 B = 0.007120 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.444877 B = 3931.432871 C = 4203.159748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.262 3.738 3 H 0.067 0.933 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.889 5.889 8 Si 0.906 3.094 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.552 5.552 13 C 0.566 3.434 14 O -0.477 6.477 15 C -0.136 4.136 16 C -0.054 4.054 17 C -0.107 4.107 18 C -0.105 4.105 19 C -0.055 4.055 20 C -0.134 4.134 21 C 0.568 3.432 22 O -0.451 6.451 23 H 0.013 0.987 24 H 0.102 0.898 25 H 0.046 0.954 26 H 0.266 0.734 27 H 0.138 0.862 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.937 -6.595 14.255 16.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.165 3.835 3 H 0.085 0.915 4 C -0.562 4.562 5 H 0.080 0.920 6 C -0.135 4.135 7 N -0.527 5.527 8 Si 0.733 3.267 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.292 5.292 13 C 0.354 3.646 14 O -0.350 6.350 15 C -0.140 4.140 16 C -0.072 4.072 17 C -0.125 4.125 18 C -0.123 4.123 19 C -0.074 4.074 20 C -0.138 4.138 21 C 0.355 3.645 22 O -0.322 6.322 23 H 0.032 0.968 24 H 0.120 0.880 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.156 0.844 28 H 0.153 0.847 29 H 0.154 0.846 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.646 -6.201 13.618 15.401 hybrid contribution 0.307 -0.425 -0.850 0.999 sum 3.954 -6.626 12.768 14.919 Atomic orbital electron populations 1.22146 0.96724 1.01125 1.01218 1.19302 0.92218 0.93542 0.78426 0.91508 1.21148 1.32367 1.12927 0.89729 0.92040 1.24840 0.94741 0.94915 0.99024 1.69860 1.36178 1.22524 1.24125 0.86362 0.79303 0.79273 0.81751 1.20330 1.20967 1.19841 1.47212 1.45551 1.12619 1.23794 1.18369 0.77806 0.86602 0.81867 1.90732 1.50195 1.17445 1.76640 1.20933 1.00600 0.95498 0.96952 1.20763 0.95884 0.98889 0.91711 1.21349 0.99032 0.92417 0.99692 1.21361 0.96390 0.98601 0.95920 1.20769 0.96848 0.96890 0.92886 1.21037 1.00311 0.95370 0.97051 1.18218 0.79961 0.82125 0.84233 1.90740 1.34865 1.52312 1.54264 0.96824 0.87998 0.93451 0.92434 0.84436 0.84652 0.84649 0.84401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 8.98 37.16 0.33 -3.54 16 2 C 0.26 6.92 2.78 -69.08 -0.19 6.72 16 3 H 0.07 1.90 7.58 -51.93 -0.39 1.50 16 4 C -0.52 -14.82 8.11 -34.44 -0.28 -15.10 16 5 H 0.06 1.77 7.69 -52.49 -0.40 1.37 16 6 C 0.07 1.88 5.30 -17.82 -0.09 1.79 16 7 N -0.89 -25.22 11.32 55.43 0.63 -24.59 16 8 Si 0.91 21.78 29.54 -169.99 -5.02 16.76 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 12 N -0.55 -12.79 2.51 -111.75 -0.28 -13.07 16 13 C 0.57 11.93 8.02 -12.46 -0.10 11.83 16 14 O -0.48 -11.00 17.43 5.42 0.09 -10.91 16 15 C -0.14 -2.26 6.41 -104.83 -0.67 -2.93 16 16 C -0.05 -0.66 10.09 -39.32 -0.40 -1.06 16 17 C -0.11 -0.99 10.04 -39.44 -0.40 -1.39 16 18 C -0.10 -0.98 10.04 -39.45 -0.40 -1.37 16 19 C -0.06 -0.69 10.09 -39.33 -0.40 -1.09 16 20 C -0.13 -2.24 6.40 -104.84 -0.67 -2.91 16 21 C 0.57 12.21 7.30 -12.46 -0.09 12.12 16 22 O -0.45 -10.75 16.13 5.42 0.09 -10.66 16 23 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 24 H 0.10 2.73 6.07 -51.93 -0.32 2.41 16 25 H 0.05 1.20 6.84 -51.93 -0.35 0.85 16 26 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 28 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 29 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 30 H 0.14 1.50 8.06 -52.48 -0.42 1.07 16 LS Contribution 268.67 15.07 4.05 4.05 Total: -1.00 -31.83 268.67 -6.51 -38.35 By element: Atomic # 1 Polarization: -0.28 SS G_CDS: -2.72 Total: -2.99 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -3.35 Total: 3.07 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.35 Total: -37.66 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: 0.18 Total: -21.57 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.83 -6.51 -38.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041227518.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.816 kcal (2) G-P(sol) polarization free energy of solvation -31.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds