Wall clock time and date at job start Mon Mar 30 2020 03:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47116 * 2 1 4 4 C 1.50697 * 109.47288 * 240.00259 * 2 1 3 5 5 H 1.08002 * 119.99807 * 240.00769 * 4 2 1 6 6 C 1.37877 * 120.00022 * 59.99674 * 4 2 1 7 7 N 1.31515 * 119.99980 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00046 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46701 * 90.00329 * 8 6 4 10 10 H 1.48495 * 109.47146 * 210.00206 * 8 6 4 11 11 H 1.48497 * 109.46998 * 330.00432 * 8 6 4 12 12 N 1.46500 * 109.46785 * 119.99923 * 2 1 3 13 13 C 1.34523 * 124.46093 * 239.99714 * 12 2 1 14 14 O 1.21442 * 125.71189 * 359.96211 * 13 12 2 15 15 C 1.47816 * 108.58205 * 179.97438 * 13 12 2 16 16 C 1.38568 * 134.30399 * 179.97438 * 15 13 12 17 17 C 1.38612 * 119.71964 * 180.02562 * 16 15 13 18 18 C 1.38235 * 120.45945 * 0.02562 * 17 16 15 19 19 C 1.38607 * 120.45691 * 0.02562 * 18 17 16 20 20 C 1.38562 * 119.72184 * 359.97438 * 19 18 17 21 21 C 1.34526 * 124.46118 * 59.98035 * 12 2 1 22 22 O 1.21444 * 125.70787 * 0.02562 * 21 12 2 23 23 H 1.09006 * 109.47028 * 300.00088 * 1 2 3 24 24 H 1.09005 * 109.46938 * 60.00028 * 1 2 3 25 25 H 1.08999 * 109.47361 * 179.97438 * 1 2 3 26 26 H 0.97004 * 119.99846 * 179.97438 * 7 6 4 27 27 H 1.08001 * 120.13970 * 0.07150 * 16 15 13 28 28 H 1.07994 * 119.76881 * 180.27787 * 17 16 15 29 29 H 1.08001 * 119.76462 * 179.97438 * 18 17 16 30 30 H 1.08005 * 120.13408 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3214 -1.1202 -4.0080 9 1 1.3427 -2.1615 -4.4119 10 1 2.4866 -0.1412 -5.1123 11 1 3.6293 -1.7582 -3.7122 12 7 2.0183 -0.6906 1.1962 13 6 2.7949 -0.1252 2.1379 14 8 3.1967 1.0208 2.1310 15 6 3.0775 -1.1322 3.1824 16 6 3.8032 -1.1249 4.3628 17 6 3.8699 -2.2736 5.1356 18 6 3.2182 -3.4255 4.7365 19 6 2.4895 -3.4479 3.5576 20 6 2.4140 -2.3071 2.7749 21 6 1.7488 -1.9736 1.4977 22 8 1.0730 -2.7314 0.8315 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.7095 1.1619 -3.4844 27 1 4.3140 -0.2276 4.6798 28 1 4.4315 -2.2674 6.0580 29 1 3.2781 -4.3144 5.3470 30 1 1.9821 -4.3507 3.2509 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041227518.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:47 Heat of formation + Delta-G solvation = -39.544968 kcal Electronic energy + Delta-G solvation = -17303.546806 eV Core-core repulsion = 14449.911861 eV Total energy + Delta-G solvation = -2853.634945 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.19098 -39.57791 -39.40203 -37.08468 -35.67607 -33.20229 -32.04285 -30.61534 -27.48880 -26.04479 -25.33876 -23.09603 -22.62026 -20.74779 -19.00222 -18.51576 -17.98566 -17.26521 -17.16430 -16.31451 -16.20863 -15.46910 -15.24499 -15.03029 -14.97419 -14.78280 -13.96162 -13.63918 -13.39744 -13.15534 -13.06737 -12.86831 -12.59817 -12.40883 -12.21943 -11.69748 -11.36598 -11.13156 -10.65876 -10.53073 -10.14585 -10.07275 -8.30004 -6.45825 -0.90129 0.08022 1.09746 1.34147 1.36720 1.45808 1.64207 2.05508 2.34106 2.69793 2.75093 2.99683 3.37506 3.69872 4.12649 4.25406 4.31639 4.44893 4.52472 4.58330 4.73484 4.81162 4.91390 5.04236 5.22502 5.29017 5.31743 5.44152 5.69180 5.78252 5.83117 6.13119 6.32310 6.52369 6.79175 7.23865 8.76251 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.033387 B = 0.007120 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.444877 B = 3931.432871 C = 4203.159748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.264 3.736 3 H 0.033 0.967 4 C -0.545 4.545 5 H 0.046 0.954 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 0.969 3.031 9 H -0.272 1.272 10 H -0.270 1.270 11 H -0.273 1.273 12 N -0.572 5.572 13 C 0.557 3.443 14 O -0.514 6.514 15 C -0.159 4.159 16 C -0.046 4.046 17 C -0.081 4.081 18 C -0.079 4.079 19 C -0.049 4.049 20 C -0.159 4.159 21 C 0.560 3.440 22 O -0.492 6.492 23 H 0.029 0.971 24 H 0.084 0.916 25 H 0.038 0.962 26 H 0.271 0.729 27 H 0.155 0.845 28 H 0.188 0.812 29 H 0.188 0.812 30 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.472 -8.880 17.093 20.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.165 3.835 3 H 0.051 0.949 4 C -0.583 4.583 5 H 0.065 0.935 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.793 3.207 9 H -0.197 1.197 10 H -0.195 1.195 11 H -0.197 1.197 12 N -0.311 5.311 13 C 0.348 3.652 14 O -0.390 6.390 15 C -0.163 4.163 16 C -0.065 4.065 17 C -0.098 4.098 18 C -0.097 4.097 19 C -0.067 4.067 20 C -0.163 4.163 21 C 0.350 3.650 22 O -0.366 6.366 23 H 0.048 0.952 24 H 0.102 0.898 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.173 0.827 28 H 0.206 0.794 29 H 0.205 0.795 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.187 -8.492 16.491 19.261 hybrid contribution -0.119 0.249 -1.561 1.585 sum 5.068 -8.243 14.930 17.792 Atomic orbital electron populations 1.21922 0.96203 1.00385 1.01062 1.18905 0.92614 0.92143 0.79839 0.94869 1.21287 1.32991 1.12842 0.91179 0.93545 1.25677 0.94757 0.95604 1.01808 1.69955 1.36470 1.23300 1.25098 0.85389 0.78693 0.78416 0.78178 1.19698 1.19473 1.19730 1.47195 1.46515 1.13828 1.23561 1.19161 0.76530 0.87005 0.82476 1.90681 1.51545 1.19137 1.77660 1.20615 1.04138 0.93430 0.98123 1.21188 0.94262 1.01103 0.89913 1.21973 0.97266 0.90469 1.00129 1.21976 0.93214 1.00383 0.94099 1.21175 0.96684 0.95659 0.93220 1.20699 1.02290 0.97560 0.95725 1.19001 0.79239 0.81008 0.85722 1.90685 1.36909 1.52912 1.56107 0.95210 0.89764 0.94269 0.91943 0.82744 0.79443 0.79499 0.82924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.34 8.98 71.98 0.65 -6.70 16 2 C 0.26 14.91 2.78 44.24 0.12 15.04 16 3 H 0.03 2.06 7.58 -2.39 -0.02 2.04 16 4 C -0.54 -32.57 8.11 25.60 0.21 -32.36 16 5 H 0.05 2.84 7.69 -2.91 -0.02 2.81 16 6 C 0.02 1.28 5.30 84.65 0.45 1.73 16 7 N -0.91 -53.45 11.32 21.45 0.24 -53.21 16 8 Si 0.97 45.63 29.54 68.60 2.03 47.66 16 9 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 12 N -0.57 -28.22 2.51 -744.39 -1.87 -30.09 16 13 C 0.56 24.77 8.02 86.82 0.70 25.46 16 14 O -0.51 -25.21 17.43 -3.53 -0.06 -25.27 16 15 C -0.16 -5.20 6.41 -20.00 -0.13 -5.33 16 16 C -0.05 -0.97 10.09 22.44 0.23 -0.74 16 17 C -0.08 -0.96 10.04 22.36 0.22 -0.73 16 18 C -0.08 -0.95 10.04 22.36 0.22 -0.73 16 19 C -0.05 -1.05 10.09 22.44 0.23 -0.82 16 20 C -0.16 -5.25 6.40 -20.00 -0.13 -5.37 16 21 C 0.56 25.26 7.30 86.82 0.63 25.89 16 22 O -0.49 -24.74 16.13 -3.54 -0.06 -24.79 16 23 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 24 H 0.08 4.77 6.07 -2.38 -0.01 4.75 16 25 H 0.04 2.10 6.84 -2.39 -0.02 2.08 16 26 H 0.27 14.87 8.31 -92.71 -0.77 14.09 16 27 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 28 H 0.19 0.48 8.06 -2.91 -0.02 0.45 16 29 H 0.19 0.53 8.06 -2.91 -0.02 0.50 16 30 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -76.68 268.67 4.85 -71.83 By element: Atomic # 1 Polarization: -2.63 SS G_CDS: 1.17 Total: -1.47 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 3.40 Total: 15.33 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -1.63 Total: -83.29 kcal Atomic # 8 Polarization: -49.94 SS G_CDS: -0.12 Total: -50.06 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -76.68 4.85 -71.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041227518.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.288 kcal (2) G-P(sol) polarization free energy of solvation -76.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds