Wall clock time and date at job start Mon Mar 30 2020 03:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35766 * 116.99480 * 2 1 4 4 C 1.39339 * 119.72655 * 0.02562 * 3 2 1 5 5 C 1.36580 * 120.47403 * 179.97438 * 4 3 2 6 6 C 1.39587 * 119.75592 * 0.04464 * 5 4 3 7 7 C 1.47223 * 121.38489 * 179.97438 * 6 5 4 8 8 O 1.22020 * 121.06865 * 359.97438 * 7 6 5 9 9 C 1.41706 * 117.86650 * 179.66542 * 7 6 5 10 10 C 1.34810 * 120.14202 * 0.57909 * 9 7 6 11 11 N 1.35963 * 122.45825 * 359.43862 * 10 9 7 12 12 C 1.36764 * 119.22848 * 180.27145 * 11 10 9 13 13 H 1.08003 * 119.99870 * 148.67829 * 12 11 10 14 14 C 1.39118 * 119.99967 * 328.67657 * 12 11 10 15 15 N 1.31250 * 120.00274 * 343.63506 * 14 12 11 16 16 Si 1.86802 * 119.99421 * 163.63149 * 14 12 11 17 17 H 1.48498 * 109.46949 * 90.00486 * 16 14 12 18 18 H 1.48502 * 109.46857 * 209.99854 * 16 14 12 19 19 H 1.48496 * 109.47402 * 329.99953 * 16 14 12 20 20 C 1.37995 * 121.54254 * 0.25231 * 11 10 9 21 21 C 1.38468 * 119.71601 * 180.02562 * 3 2 1 22 22 H 1.09000 * 109.47423 * 60.00139 * 1 2 3 23 23 H 1.09006 * 109.47151 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47043 * 299.99686 * 1 2 3 25 25 H 1.08003 * 119.76371 * 359.97310 * 4 3 2 26 26 H 1.07997 * 120.12531 * 179.97438 * 5 4 3 27 27 H 1.07998 * 119.92936 * 180.31964 * 9 7 6 28 28 H 1.07998 * 118.77130 * 179.71138 * 10 9 7 29 29 H 0.97000 * 119.99806 * 180.02562 * 15 14 12 30 30 H 1.07997 * 120.16745 * 359.97438 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.2807 2.3746 0.0005 5 6 1.8847 3.5996 0.0011 6 6 3.2780 3.6850 0.0001 7 6 3.9663 4.9864 0.0001 8 8 3.3369 6.0317 0.0004 9 6 5.3834 4.9862 0.0064 10 6 6.0601 3.8203 0.0005 11 7 5.4343 2.6133 -0.0004 12 6 6.1865 1.4710 -0.0010 13 1 5.8160 0.5803 0.4846 14 6 7.4287 1.4565 -0.6271 15 7 7.7454 2.4034 -1.4790 16 14 8.6460 0.0892 -0.2552 17 1 8.4327 -1.0345 -1.2023 18 1 10.0305 0.6054 -0.4033 19 1 8.4425 -0.3900 1.1355 20 6 4.0579 2.5138 -0.0004 21 6 3.4284 1.2755 -0.0005 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.2027 2.3084 0.0005 26 1 1.2866 4.4988 0.0011 27 1 5.9223 5.9221 0.0118 28 1 7.1398 3.8460 0.0007 29 1 8.6114 2.3930 -1.9158 30 1 4.0148 0.3686 -0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053994654.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:18 Heat of formation + Delta-G solvation = -45.762142 kcal Electronic energy + Delta-G solvation = -17182.828901 eV Core-core repulsion = 14328.924359 eV Total energy + Delta-G solvation = -2853.904542 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.00818 -40.32676 -38.87062 -37.31992 -34.74263 -33.11411 -31.16215 -30.75192 -28.05776 -27.08849 -24.81414 -23.99200 -22.75454 -20.07673 -19.72368 -18.77628 -17.62303 -17.37272 -16.76788 -16.62260 -16.22951 -15.87843 -15.66222 -14.97744 -14.58734 -14.40250 -14.34585 -13.83858 -13.65968 -13.30475 -13.12538 -12.95562 -12.77217 -12.40883 -12.09835 -11.78045 -11.71995 -11.01774 -10.25445 -10.17106 -9.23396 -8.95055 -8.60614 -6.40222 -0.03543 0.15081 1.06896 1.43154 1.50981 1.58432 2.03544 2.24537 2.27325 2.67270 2.78291 3.29897 3.70246 3.83282 4.08841 4.15081 4.34450 4.45582 4.47386 4.52240 4.71348 4.80960 4.99986 5.09317 5.11772 5.22533 5.27694 5.34106 5.60036 5.70543 5.81320 6.40661 6.44408 6.87119 7.04119 7.28185 8.32720 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.019121 B = 0.009413 C = 0.006453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.975755 B = 2973.967465 C = 4338.110187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.327 6.327 3 C 0.176 3.824 4 C -0.240 4.240 5 C -0.005 4.005 6 C -0.267 4.267 7 C 0.391 3.609 8 O -0.595 6.595 9 C -0.392 4.392 10 C 0.206 3.794 11 N -0.314 5.314 12 C -0.392 4.392 13 H 0.122 0.878 14 C 0.015 3.985 15 N -0.876 5.876 16 Si 1.008 2.992 17 H -0.266 1.266 18 H -0.270 1.270 19 H -0.254 1.254 20 C 0.186 3.814 21 C -0.210 4.210 22 H 0.067 0.933 23 H 0.124 0.876 24 H 0.069 0.931 25 H 0.167 0.833 26 H 0.138 0.862 27 H 0.135 0.865 28 H 0.160 0.840 29 H 0.292 0.708 30 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.824 -7.983 2.498 10.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C 0.129 3.871 4 C -0.259 4.259 5 C -0.024 4.024 6 C -0.271 4.271 7 C 0.290 3.710 8 O -0.490 6.490 9 C -0.418 4.418 10 C 0.070 3.930 11 N 0.016 4.984 12 C -0.518 4.518 13 H 0.139 0.861 14 C -0.192 4.192 15 N -0.508 5.508 16 Si 0.828 3.172 17 H -0.191 1.191 18 H -0.195 1.195 19 H -0.178 1.178 20 C 0.079 3.921 21 C -0.232 4.232 22 H 0.085 0.915 23 H 0.142 0.858 24 H 0.088 0.912 25 H 0.184 0.816 26 H 0.156 0.844 27 H 0.153 0.847 28 H 0.177 0.823 29 H 0.102 0.898 30 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.783 -7.799 2.350 10.600 hybrid contribution 0.720 -0.003 -0.237 0.758 sum -6.063 -7.801 2.113 10.104 Atomic orbital electron populations 1.23454 0.75875 1.05893 1.02696 1.86022 1.24009 1.26072 1.87932 1.18818 0.90995 0.84978 0.92341 1.21067 1.01423 0.90604 1.12808 1.20656 0.91892 0.98511 0.91343 1.20435 0.95710 0.93739 1.17246 1.18570 0.89652 0.87604 0.75214 1.90519 1.71084 1.35137 1.52266 1.21699 0.95426 0.97864 1.26774 1.21777 0.99379 0.83475 0.88401 1.39747 1.02525 1.06466 1.49710 1.20339 1.00760 0.92005 1.38662 0.86059 1.26558 0.99744 1.01049 0.91898 1.69880 1.23736 1.35252 1.21933 0.84712 0.76133 0.76537 0.79812 1.19141 1.19477 1.17751 1.18197 0.83844 0.93698 0.96353 1.19844 0.92435 0.96403 1.14489 0.91452 0.85775 0.91218 0.81580 0.84375 0.84702 0.82331 0.89767 0.84294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 9.80 113.37 1.11 1.37 16 2 O -0.33 -9.50 10.48 -90.93 -0.95 -10.45 16 3 C 0.18 6.13 6.68 22.59 0.15 6.28 16 4 C -0.24 -7.67 8.96 22.15 0.20 -7.47 16 5 C -0.01 -0.21 9.60 22.21 0.21 0.00 16 6 C -0.27 -12.60 5.89 -19.98 -0.12 -12.72 16 7 C 0.39 20.27 6.96 25.49 0.18 20.44 16 8 O -0.60 -32.90 17.35 -5.38 -0.09 -32.99 16 9 C -0.39 -19.43 9.96 22.34 0.22 -19.21 16 10 C 0.21 10.12 8.94 83.27 0.74 10.86 16 11 N -0.31 -15.47 2.80 -343.61 -0.96 -16.44 16 12 C -0.39 -18.48 8.67 84.14 0.73 -17.75 16 13 H 0.12 5.37 6.50 -2.91 -0.02 5.35 16 14 C 0.02 0.68 4.97 84.99 0.42 1.11 16 15 N -0.88 -42.22 11.25 21.69 0.24 -41.98 16 16 Si 1.01 34.80 29.58 68.60 2.03 36.83 16 17 H -0.27 -9.05 7.11 99.48 0.71 -8.34 16 18 H -0.27 -9.08 7.11 99.48 0.71 -8.37 16 19 H -0.25 -8.41 7.11 99.48 0.71 -7.71 16 20 C 0.19 8.77 6.49 38.94 0.25 9.02 16 21 C -0.21 -8.72 9.18 22.49 0.21 -8.51 16 22 H 0.07 1.04 7.64 -2.39 -0.02 1.02 16 23 H 0.12 1.47 8.14 -2.38 -0.02 1.45 16 24 H 0.07 1.04 7.64 -2.39 -0.02 1.02 16 25 H 0.17 3.79 6.24 -2.91 -0.02 3.77 16 26 H 0.14 5.08 7.78 -2.91 -0.02 5.05 16 27 H 0.14 6.24 8.06 -2.91 -0.02 6.21 16 28 H 0.16 7.64 6.22 -2.91 -0.02 7.62 16 29 H 0.29 12.91 8.31 -92.71 -0.77 12.14 16 30 H 0.14 5.66 6.35 -2.91 -0.02 5.64 16 Total: -1.00 -62.51 261.78 5.75 -56.76 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 1.18 Total: 24.85 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: 4.31 Total: -16.58 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.72 Total: -58.41 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -1.05 Total: -43.44 kcal Atomic # 14 Polarization: 34.80 SS G_CDS: 2.03 Total: 36.83 kcal Total: -62.51 5.75 -56.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053994654.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.001 kcal (2) G-P(sol) polarization free energy of solvation -62.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds