Wall clock time and date at job start Mon Mar 30 2020 03:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35976 * 117.00319 * 2 1 4 4 C 1.38211 * 120.08733 * 359.97438 * 3 2 1 5 5 C 1.38773 * 120.59559 * 180.02562 * 4 3 2 6 6 C 1.37678 * 120.43241 * 0.02562 * 5 4 3 7 7 C 1.39652 * 119.75919 * 359.97438 * 6 5 4 8 8 C 1.47396 * 120.96550 * 179.97438 * 7 6 5 9 9 O 1.22036 * 120.88452 * 359.97438 * 8 7 6 10 10 C 1.41185 * 118.22860 * 180.02562 * 8 7 6 11 11 C 1.39045 * 119.71365 * 359.97438 * 10 8 7 12 12 C 1.40339 * 119.20112 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99474 * 335.59649 * 12 11 10 14 14 C 1.40546 * 120.00290 * 155.59072 * 12 11 10 15 15 N 1.30458 * 120.00162 * 343.59804 * 14 12 11 16 16 Si 1.86803 * 119.99894 * 163.59701 * 14 12 11 17 17 H 1.48503 * 109.47258 * 60.00234 * 16 14 12 18 18 H 1.48505 * 109.47358 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47276 * 300.00299 * 16 14 12 20 20 N 1.37394 * 121.60758 * 359.97438 * 11 10 8 21 21 H 0.97002 * 119.26209 * 180.02562 * 20 11 10 22 22 C 1.38038 * 121.47325 * 0.28953 * 20 11 10 23 23 H 1.09006 * 109.47310 * 299.99845 * 1 2 3 24 24 H 1.09001 * 109.47178 * 59.99794 * 1 2 3 25 25 H 1.09004 * 109.47610 * 180.02562 * 1 2 3 26 26 H 1.08005 * 119.70079 * 0.02562 * 4 3 2 27 27 H 1.08007 * 119.78658 * 180.02562 * 5 4 3 28 28 H 1.08006 * 120.12374 * 179.97438 * 6 5 4 29 29 H 1.07997 * 120.14202 * 179.97438 * 10 8 7 30 30 H 0.97001 * 119.99794 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2954 2.3718 -0.0005 5 6 1.9145 3.6138 -0.0011 6 6 3.2880 3.7084 -0.0016 7 6 4.0628 2.5465 -0.0011 8 6 5.5351 2.6167 -0.0022 9 8 6.1109 3.6927 -0.0041 10 6 6.2614 1.4060 -0.0021 11 6 5.5803 0.1938 -0.0005 12 6 6.3130 -1.0032 0.0001 13 1 7.3211 -1.0193 -0.3871 14 6 5.7350 -2.1808 0.5046 15 7 4.6687 -2.1152 1.2532 16 14 6.4937 -3.8399 0.1032 17 1 7.8899 -3.8809 0.6076 18 1 5.7013 -4.9163 0.7503 19 1 6.4930 -4.0416 -1.3681 20 7 4.2075 0.1391 0.0016 21 1 3.7674 -0.7254 0.0031 22 6 3.4405 1.2867 -0.0038 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 0.2170 2.3114 -0.0005 27 1 1.3149 4.5122 -0.0011 28 1 3.7646 4.6776 -0.0025 29 1 7.3412 1.4214 -0.0034 30 1 4.2696 -2.9279 1.6011 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062571396.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:41 Heat of formation + Delta-G solvation = -72.060177 kcal Electronic energy + Delta-G solvation = -17286.264733 eV Core-core repulsion = 14431.219822 eV Total energy + Delta-G solvation = -2855.044910 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.73641 -39.78873 -38.32071 -37.55122 -35.34058 -32.52179 -31.42661 -30.03425 -28.64114 -27.71931 -24.14270 -23.80261 -22.61239 -19.97744 -19.45450 -19.04517 -17.82768 -17.12799 -16.97461 -16.69309 -16.17700 -15.65658 -15.49287 -15.30994 -14.61641 -14.12976 -13.93285 -13.75830 -13.39617 -13.30024 -13.01329 -12.98449 -12.54129 -12.41638 -12.07001 -12.01092 -11.90953 -11.34446 -10.07795 -9.92608 -9.53322 -9.09319 -8.19852 -7.02721 0.01786 0.30560 1.02346 1.36548 1.51536 1.60206 2.09379 2.23947 2.30968 2.51299 2.79015 3.42391 3.75783 4.01691 4.13734 4.21196 4.42543 4.46940 4.50353 4.66126 4.76816 4.87309 5.04146 5.14200 5.18876 5.34047 5.47970 5.69259 5.79492 5.90183 6.06545 6.28103 6.44347 6.80822 6.95300 7.53208 7.89332 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.020982 B = 0.009472 C = 0.006655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.166400 B = 2955.269984 C = 4206.369613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.058 3.942 4 C -0.148 4.148 5 C -0.126 4.126 6 C -0.088 4.088 7 C -0.200 4.200 8 C 0.381 3.619 9 O -0.624 6.624 10 C -0.501 4.501 11 C 0.344 3.656 12 C -0.479 4.479 13 H 0.110 0.890 14 C 0.043 3.957 15 N -0.804 5.804 16 Si 1.005 2.995 17 H -0.257 1.257 18 H -0.256 1.256 19 H -0.253 1.253 20 N -0.600 5.600 21 H 0.423 0.577 22 C 0.160 3.840 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.116 0.884 26 H 0.174 0.826 27 H 0.168 0.832 28 H 0.125 0.875 29 H 0.099 0.901 30 H 0.312 0.688 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.900 -4.529 -1.519 13.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.011 3.989 4 C -0.167 4.167 5 C -0.145 4.145 6 C -0.107 4.107 7 C -0.205 4.205 8 C 0.285 3.715 9 O -0.524 6.524 10 C -0.525 4.525 11 C 0.233 3.767 12 C -0.510 4.510 13 H 0.127 0.873 14 C -0.178 4.178 15 N -0.430 5.430 16 Si 0.823 3.177 17 H -0.181 1.181 18 H -0.180 1.180 19 H -0.177 1.177 20 N -0.215 5.215 21 H 0.265 0.735 22 C 0.054 3.946 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.134 0.866 26 H 0.191 0.809 27 H 0.185 0.815 28 H 0.143 0.857 29 H 0.118 0.882 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.729 -4.322 -1.367 13.512 hybrid contribution 0.475 -0.678 0.103 0.834 sum -12.254 -5.000 -1.264 13.295 Atomic orbital electron populations 1.23372 0.75872 1.05539 1.02619 1.86013 1.23963 1.25832 1.89581 1.18475 0.88808 0.86734 1.04902 1.21466 1.01295 0.90353 1.03618 1.21103 0.92855 0.98500 1.02017 1.21080 0.94580 0.96593 0.98480 1.20496 0.96516 0.92657 1.10847 1.18406 0.87814 0.89227 0.76058 1.90458 1.73290 1.33393 1.55213 1.21557 0.98394 0.91633 1.40945 1.17840 0.81085 0.94704 0.83030 1.20100 1.02578 0.91797 1.36486 0.87259 1.27257 0.94482 1.05865 0.90170 1.69314 1.18356 1.35005 1.20280 0.84884 0.79380 0.73209 0.80265 1.18070 1.17988 1.17663 1.41963 1.04711 1.07972 1.66862 0.73451 1.17796 0.89104 0.87238 1.00433 0.91327 0.91013 0.86592 0.80863 0.81500 0.85746 0.88247 0.87561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.50 16 2 O -0.34 -11.27 9.75 -93.28 -0.91 -12.18 16 3 C 0.06 2.18 6.70 22.60 0.15 2.33 16 4 C -0.15 -4.31 9.03 22.39 0.20 -4.10 16 5 C -0.13 -3.83 10.02 22.27 0.22 -3.61 16 6 C -0.09 -3.66 9.63 22.48 0.22 -3.44 16 7 C -0.20 -10.09 5.89 -19.97 -0.12 -10.21 16 8 C 0.38 22.53 6.94 25.41 0.18 22.70 16 9 O -0.62 -39.45 17.29 -5.43 -0.09 -39.54 16 10 C -0.50 -29.53 9.72 23.19 0.23 -29.31 16 11 C 0.34 18.72 6.34 38.98 0.25 18.96 16 12 C -0.48 -23.93 9.02 23.34 0.21 -23.72 16 13 H 0.11 5.25 7.91 -2.91 -0.02 5.23 16 14 C 0.04 1.87 5.16 85.46 0.44 2.31 16 15 N -0.80 -35.70 11.16 21.93 0.24 -35.45 16 16 Si 1.00 32.18 29.59 68.60 2.03 34.21 16 17 H -0.26 -8.20 7.11 99.48 0.71 -7.49 16 18 H -0.26 -7.48 7.11 99.48 0.71 -6.77 16 19 H -0.25 -7.92 7.11 99.48 0.71 -7.22 16 20 N -0.60 -30.07 4.90 -180.59 -0.89 -30.95 16 21 H 0.42 20.23 5.62 -92.71 -0.52 19.71 16 22 C 0.16 7.54 6.68 39.05 0.26 7.80 16 23 H 0.07 1.13 7.66 -2.38 -0.02 1.11 16 24 H 0.07 1.12 7.66 -2.39 -0.02 1.11 16 25 H 0.12 1.77 8.14 -2.38 -0.02 1.75 16 26 H 0.17 3.30 6.26 -2.91 -0.02 3.29 16 27 H 0.17 3.53 8.06 -2.91 -0.02 3.50 16 28 H 0.12 5.13 7.75 -2.91 -0.02 5.11 16 29 H 0.10 5.93 8.06 -2.91 -0.02 5.90 16 30 H 0.31 12.04 8.29 -92.71 -0.77 11.27 16 Total: -1.00 -70.61 264.35 4.40 -66.21 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: 0.66 Total: 36.49 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: 3.35 Total: -18.78 kcal Atomic # 7 Polarization: -65.77 SS G_CDS: -0.64 Total: -66.41 kcal Atomic # 8 Polarization: -50.72 SS G_CDS: -1.00 Total: -51.72 kcal Atomic # 14 Polarization: 32.18 SS G_CDS: 2.03 Total: 34.21 kcal Total: -70.61 4.40 -66.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062571396.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.852 kcal (2) G-P(sol) polarization free energy of solvation -70.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds