Wall clock time and date at job start Mon Mar 30 2020 03:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.38894 * 123.78272 * 2 1 4 4 C 1.39871 * 130.63404 * 359.34145 * 3 2 1 5 5 C 1.36394 * 120.33099 * 180.42146 * 4 3 2 6 6 C 1.40002 * 120.22822 * 0.23066 * 5 4 3 7 7 C 1.47540 * 120.24589 * 180.02562 * 6 5 4 8 8 O 1.21834 * 119.99984 * 179.97438 * 7 6 5 9 9 C 1.41713 * 120.00487 * 0.02562 * 7 6 5 10 10 H 1.08001 * 119.99735 * 353.20723 * 9 7 6 11 11 C 1.40357 * 120.00608 * 173.20380 * 9 7 6 12 12 N 1.30525 * 119.99587 * 6.10388 * 11 9 7 13 13 Si 1.86793 * 120.00100 * 186.10320 * 11 9 7 14 14 H 1.48504 * 109.47346 * 94.98750 * 13 11 9 15 15 H 1.48501 * 109.47227 * 214.98846 * 13 11 9 16 16 H 1.48499 * 109.47341 * 334.98777 * 13 11 9 17 17 C 1.40088 * 119.50743 * 0.02562 * 6 5 4 18 18 C 1.36147 * 119.79073 * 359.97438 * 17 6 5 19 19 C 1.51182 * 132.77616 * 179.97438 * 18 17 6 20 20 C 1.34326 * 123.78602 * 179.73059 * 2 1 3 21 21 O 1.21284 * 126.41804 * 0.02562 * 20 2 1 22 22 H 1.09000 * 109.47410 * 180.28880 * 1 2 3 23 23 H 1.09002 * 109.47418 * 300.28888 * 1 2 3 24 24 H 1.09005 * 109.47330 * 60.29214 * 1 2 3 25 25 H 1.07997 * 119.83210 * 0.69985 * 4 3 2 26 26 H 1.08003 * 119.88616 * 180.25521 * 5 4 3 27 27 H 0.96996 * 119.99864 * 179.97438 * 12 11 9 28 28 H 1.08003 * 120.10659 * 179.97438 * 17 6 5 29 29 H 1.09000 * 110.52604 * 298.64632 * 19 18 17 30 30 H 1.08990 * 110.52883 * 61.40414 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2373 1.1544 0.0000 4 6 1.8616 2.5017 -0.0122 5 6 2.8106 3.4813 -0.0181 6 6 4.1699 3.1460 -0.0168 7 6 5.1967 4.2054 -0.0225 8 8 6.3783 3.9085 -0.0209 9 6 4.8087 5.5683 -0.0289 10 1 3.7675 5.8329 -0.1401 11 6 5.7774 6.5746 0.1095 12 7 7.0448 6.2626 0.1242 13 14 5.2530 8.3599 0.2726 14 1 5.1797 8.7251 1.7101 15 1 6.2434 9.2311 -0.4096 16 1 3.9188 8.5431 -0.3532 17 6 4.5477 1.7970 -0.0100 18 6 3.5924 0.8270 -0.0042 19 6 3.6626 -0.6832 0.0032 20 6 2.2120 -1.1164 0.0052 21 8 1.8012 -2.2576 0.0102 22 1 -0.3634 -1.0276 0.0052 23 1 -0.3634 0.5183 0.8874 24 1 -0.3634 0.5093 -0.8926 25 1 0.8149 2.7675 -0.0125 26 1 2.5124 4.5194 -0.0233 27 1 7.7143 6.9580 0.2195 28 1 5.5935 1.5274 -0.0093 29 1 4.1682 -1.0466 -0.8914 30 1 4.1693 -1.0378 0.9006 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074139651.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:25 Heat of formation + Delta-G solvation = -60.174283 kcal Electronic energy + Delta-G solvation = -16681.615504 eV Core-core repulsion = 13827.086005 eV Total energy + Delta-G solvation = -2854.529499 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.53181 -39.82050 -38.45097 -36.60231 -34.76044 -34.10606 -31.23038 -30.05348 -28.13022 -27.55541 -24.45473 -22.65867 -21.57130 -21.23274 -18.70306 -18.15397 -17.62815 -17.38463 -17.29180 -16.12955 -15.49995 -15.21606 -14.93762 -14.62981 -14.53464 -14.49495 -14.08996 -13.86140 -13.57811 -13.31553 -13.05908 -12.97214 -12.67614 -12.45641 -12.01135 -11.67495 -11.27587 -11.23216 -10.94215 -9.86434 -9.59302 -8.82759 -8.32944 -7.03219 -0.03531 0.49307 1.25939 1.42492 1.44479 1.59354 1.72525 2.23183 2.25520 2.86067 3.09938 3.39922 3.76009 3.83488 4.07391 4.24645 4.35136 4.43258 4.48962 4.50736 4.59917 4.75869 4.81813 4.98092 5.11719 5.22906 5.42523 5.53286 5.70608 5.75229 6.00463 6.12643 6.73247 6.78013 6.83300 8.27871 8.51719 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.047535 B = 0.005339 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.894208 B = 5243.507644 C = 5807.987593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.546 5.546 3 C 0.131 3.869 4 C -0.128 4.128 5 C -0.059 4.059 6 C -0.156 4.156 7 C 0.364 3.636 8 O -0.600 6.600 9 C -0.541 4.541 10 H 0.101 0.899 11 C 0.023 3.977 12 N -0.788 5.788 13 Si 0.994 3.006 14 H -0.261 1.261 15 H -0.272 1.272 16 H -0.241 1.241 17 C -0.053 4.053 18 C -0.154 4.154 19 C -0.108 4.108 20 C 0.525 3.475 21 O -0.541 6.541 22 H 0.087 0.913 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.161 0.839 26 H 0.147 0.853 27 H 0.281 0.719 28 H 0.112 0.888 29 H 0.137 0.863 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.268 -4.932 0.157 14.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.267 5.267 3 C 0.035 3.965 4 C -0.148 4.148 5 C -0.078 4.078 6 C -0.158 4.158 7 C 0.264 3.736 8 O -0.495 6.495 9 C -0.571 4.571 10 H 0.118 0.882 11 C -0.196 4.196 12 N -0.417 5.417 13 Si 0.813 3.187 14 H -0.186 1.186 15 H -0.197 1.197 16 H -0.164 1.164 17 C -0.072 4.072 18 C -0.157 4.157 19 C -0.146 4.146 20 C 0.316 3.684 21 O -0.419 6.419 22 H 0.106 0.894 23 H 0.107 0.893 24 H 0.108 0.892 25 H 0.178 0.822 26 H 0.165 0.835 27 H 0.092 0.908 28 H 0.130 0.870 29 H 0.155 0.845 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.928 -5.788 0.160 14.165 hybrid contribution 0.325 0.682 0.078 0.759 sum -12.603 -5.106 0.237 13.600 Atomic orbital electron populations 1.22109 0.75649 1.04911 1.04569 1.45598 1.08581 1.04852 1.67688 1.18412 0.89934 0.88034 1.00118 1.20311 1.01213 0.88029 1.05296 1.21119 0.90748 1.00504 0.95415 1.21455 0.96613 0.94838 1.02854 1.18764 0.87146 0.89392 0.78249 1.90461 1.21354 1.85701 1.51939 1.21472 0.96523 0.92550 1.46573 0.88151 1.27281 0.93980 1.06908 0.91394 1.70108 1.02983 1.37031 1.31584 0.85046 0.79934 0.74181 0.79544 1.18594 1.19677 1.16387 1.20089 0.98851 0.91273 0.96972 1.19524 0.92787 0.95309 1.08036 1.21105 0.94671 0.91265 1.07596 1.20800 0.89690 0.83657 0.74268 1.90733 1.79541 1.19940 1.51727 0.89380 0.89251 0.89238 0.82159 0.83549 0.90810 0.86976 0.84522 0.84526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.17 10.82 127.77 1.38 2.55 16 2 N -0.55 -13.78 3.11 -653.84 -2.04 -15.81 16 3 C 0.13 3.78 6.70 38.70 0.26 4.04 16 4 C -0.13 -3.54 9.76 22.23 0.22 -3.32 16 5 C -0.06 -2.08 9.37 22.27 0.21 -1.88 16 6 C -0.16 -6.98 5.89 -19.95 -0.12 -7.10 16 7 C 0.36 20.58 6.90 25.58 0.18 20.76 16 8 O -0.60 -39.23 14.93 -4.78 -0.07 -39.30 16 9 C -0.54 -28.77 8.83 23.64 0.21 -28.56 16 10 H 0.10 4.61 6.07 -2.91 -0.02 4.59 16 11 C 0.02 1.22 5.49 85.40 0.47 1.69 16 12 N -0.79 -45.68 11.76 21.89 0.26 -45.42 16 13 Si 0.99 37.52 29.57 68.60 2.03 39.55 16 14 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 15 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 16 H -0.24 -8.26 7.11 99.48 0.71 -7.55 16 17 C -0.05 -2.15 9.55 22.23 0.21 -1.94 16 18 C -0.15 -4.97 6.30 -19.92 -0.13 -5.09 16 19 C -0.11 -2.78 6.89 29.48 0.20 -2.58 16 20 C 0.52 14.69 8.23 87.95 0.72 15.42 16 21 O -0.54 -17.63 17.41 -3.04 -0.05 -17.69 16 22 H 0.09 1.54 7.56 -2.39 -0.02 1.52 16 23 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 25 H 0.16 3.08 8.05 -2.91 -0.02 3.05 16 26 H 0.15 4.80 6.22 -2.91 -0.02 4.78 16 27 H 0.28 14.57 8.29 -92.71 -0.77 13.81 16 28 H 0.11 4.86 7.66 -2.91 -0.02 4.84 16 29 H 0.14 3.08 8.14 -2.39 -0.02 3.06 16 30 H 0.14 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -74.27 269.26 5.12 -69.15 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 1.18 Total: 15.53 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 3.82 Total: -6.00 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -1.78 Total: -61.23 kcal Atomic # 8 Polarization: -56.87 SS G_CDS: -0.12 Total: -56.99 kcal Atomic # 14 Polarization: 37.52 SS G_CDS: 2.03 Total: 39.55 kcal Total: -74.27 5.12 -69.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074139651.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.972 kcal (2) G-P(sol) polarization free energy of solvation -74.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds