Wall clock time and date at job start Mon Mar 30 2020 03:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35655 * 124.70371 * 2 1 4 4 C 1.38929 * 109.27289 * 179.73897 * 3 2 1 5 5 C 1.40881 * 126.91591 * 180.23337 * 4 3 2 6 6 H 1.08002 * 119.99839 * 180.02562 * 5 4 3 7 7 C 1.39708 * 120.00432 * 0.03436 * 5 4 3 8 8 N 1.31067 * 119.99860 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00089 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46753 * 90.00052 * 9 7 5 11 11 H 1.48501 * 109.46796 * 209.99969 * 9 7 5 12 12 H 1.48495 * 109.47027 * 330.00306 * 9 7 5 13 13 C 1.47680 * 106.16404 * 0.26339 * 4 3 2 14 14 C 1.39312 * 133.66496 * 180.02562 * 13 4 3 15 15 C 1.38126 * 119.78474 * 179.97438 * 14 13 4 16 16 C 1.39706 * 120.10419 * 0.03315 * 15 14 13 17 17 C 1.38278 * 120.32846 * 359.97438 * 16 15 14 18 18 C 1.38322 * 124.70816 * 180.20451 * 2 1 3 19 19 O 1.36585 * 108.49911 * 180.02562 * 16 15 14 20 20 C 1.43955 * 105.53670 * 17.36049 * 19 16 15 21 21 O 1.36595 * 131.30427 * 180.02562 * 15 14 13 22 22 H 1.08998 * 109.46976 * 90.02845 * 1 2 3 23 23 H 1.09009 * 109.46716 * 210.02521 * 1 2 3 24 24 H 1.09001 * 109.47387 * 330.02220 * 1 2 3 25 25 H 1.08002 * 125.36604 * 0.02562 * 3 2 1 26 26 H 0.97000 * 120.00415 * 179.97438 * 8 7 5 27 27 H 1.07996 * 120.10954 * 359.94128 * 14 13 4 28 28 H 1.08002 * 119.94912 * 179.97438 * 17 16 15 29 29 H 1.08996 * 110.56054 * 91.28424 * 20 19 16 30 30 H 1.09000 * 110.56060 * 214.13271 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2373 1.1152 0.0000 4 6 3.5765 0.7456 0.0060 5 6 4.6919 1.6062 0.0125 6 1 5.6908 1.1955 0.0164 7 6 4.5059 2.9908 0.0142 8 7 3.2937 3.4892 0.0092 9 14 5.9849 4.1319 0.0236 10 1 6.3836 4.4368 -1.3740 11 1 5.6326 5.3929 0.7243 12 1 7.1140 3.4729 0.7278 13 6 3.5954 -0.7311 0.0034 14 6 4.6154 -1.6800 0.0071 15 6 4.3013 -3.0250 0.0035 16 6 2.9650 -3.4325 -0.0047 17 6 1.9490 -2.4945 -0.0086 18 6 2.2526 -1.1371 -0.0041 19 8 2.9282 -4.7979 -0.0062 20 6 4.2387 -5.2193 0.4149 21 8 5.0954 -4.1364 0.0063 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3633 -0.8899 0.5143 24 1 -0.3634 0.8902 0.5135 25 1 1.8692 2.1306 0.0004 26 1 3.1645 4.4506 0.0107 27 1 5.6484 -1.3650 0.0123 28 1 0.9181 -2.8163 -0.0153 29 1 4.2708 -5.3460 1.4970 30 1 4.5238 -6.1432 -0.0884 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082595395.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:09 Heat of formation + Delta-G solvation = -20.742325 kcal Electronic energy + Delta-G solvation = -17105.777387 eV Core-core repulsion = 14252.957786 eV Total energy + Delta-G solvation = -2852.819601 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.86907 -41.20314 -37.04866 -36.50583 -35.65018 -32.90143 -30.67835 -29.30810 -28.42322 -26.35364 -25.56211 -23.56361 -22.58231 -21.18195 -19.00258 -18.71377 -18.03617 -17.91960 -17.19948 -16.40819 -16.05580 -15.73987 -15.48478 -14.91897 -14.61931 -14.33202 -14.11807 -13.78224 -13.65387 -13.32176 -13.07064 -12.97369 -12.82352 -12.50726 -12.12305 -11.69707 -11.46420 -11.25451 -10.70786 -10.13067 -8.52807 -8.40909 -8.36859 -5.97531 0.28408 0.60034 1.41197 1.44504 1.56877 1.85711 2.24692 2.30807 2.51491 2.81337 2.85189 3.57943 3.71931 3.97181 4.14987 4.23550 4.24974 4.39812 4.47639 4.58375 4.67406 4.75838 4.92873 5.12948 5.25258 5.34541 5.38898 5.54361 5.86095 5.94699 6.26772 6.49174 6.71851 7.03513 7.15277 7.23798 8.57941 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.027855 B = 0.007229 C = 0.005772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.972553 B = 3872.262780 C = 4849.937779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.475 5.475 3 C -0.093 4.093 4 C -0.016 4.016 5 C -0.453 4.453 6 H 0.066 0.934 7 C 0.016 3.984 8 N -0.855 5.855 9 Si 0.986 3.014 10 H -0.269 1.269 11 H -0.269 1.269 12 H -0.266 1.266 13 C -0.154 4.154 14 C -0.052 4.052 15 C -0.040 4.040 16 C 0.038 3.962 17 C -0.124 4.124 18 C 0.086 3.914 19 O -0.321 6.321 20 C 0.206 3.794 21 O -0.329 6.329 22 H 0.070 0.930 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.186 0.814 26 H 0.281 0.719 27 H 0.120 0.880 28 H 0.146 0.854 29 H 0.097 0.903 30 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.130 -8.923 1.241 9.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.159 5.159 3 C -0.217 4.217 4 C -0.021 4.021 5 C -0.486 4.486 6 H 0.084 0.916 7 C -0.192 4.192 8 N -0.486 5.486 9 Si 0.809 3.191 10 H -0.194 1.194 11 H -0.194 1.194 12 H -0.190 1.190 13 C -0.161 4.161 14 C -0.071 4.071 15 C -0.085 4.085 16 C -0.007 4.007 17 C -0.146 4.146 18 C -0.025 4.025 19 O -0.238 6.238 20 C 0.095 3.905 21 O -0.247 6.247 22 H 0.089 0.911 23 H 0.109 0.891 24 H 0.104 0.896 25 H 0.202 0.798 26 H 0.092 0.908 27 H 0.138 0.862 28 H 0.164 0.836 29 H 0.114 0.886 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.528 -8.783 1.147 9.535 hybrid contribution 0.705 0.514 0.019 0.872 sum -2.823 -8.270 1.166 8.816 Atomic orbital electron populations 1.22005 0.76374 1.04540 1.03154 1.43655 1.06385 1.03344 1.62476 1.23245 0.89808 0.90265 1.18387 1.18430 0.93539 0.88036 1.02142 1.18969 0.93024 0.91314 1.45248 0.91622 1.26440 0.99728 0.99601 0.93428 1.69486 1.23070 1.14236 1.41816 0.85113 0.77956 0.77147 0.78922 1.19377 1.19410 1.18982 1.19271 0.92166 0.94408 1.10239 1.19146 0.99036 0.87589 1.01356 1.19178 0.88348 0.88555 1.12421 1.19074 0.93293 0.83001 1.05352 1.18488 0.98177 0.87026 1.10930 1.17807 0.90488 0.87936 1.06250 1.87219 1.35212 1.16170 1.85163 1.25992 0.71754 0.91416 1.01332 1.87246 1.35343 1.15898 1.86194 0.91119 0.89090 0.89574 0.79790 0.90839 0.86242 0.83635 0.88574 0.81990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.43 10.97 127.77 1.40 3.84 16 2 N -0.47 -20.71 3.16 -535.83 -1.69 -22.40 16 3 C -0.09 -4.81 10.32 84.27 0.87 -3.94 16 4 C -0.02 -0.91 6.10 -19.97 -0.12 -1.03 16 5 C -0.45 -25.31 9.42 23.27 0.22 -25.09 16 6 H 0.07 3.59 7.84 -2.91 -0.02 3.56 16 7 C 0.02 0.81 5.49 85.16 0.47 1.28 16 8 N -0.85 -44.59 10.33 21.80 0.23 -44.36 16 9 Si 0.99 40.14 29.56 68.60 2.03 42.17 16 10 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 11 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 12 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 13 C -0.15 -7.79 6.33 -20.03 -0.13 -7.92 16 14 C -0.05 -2.41 10.10 22.50 0.23 -2.19 16 15 C -0.04 -1.66 7.13 22.60 0.16 -1.49 16 16 C 0.04 1.48 7.13 22.63 0.16 1.64 16 17 C -0.12 -4.81 9.89 22.49 0.22 -4.59 16 18 C 0.09 3.89 6.77 38.82 0.26 4.15 16 19 O -0.32 -10.52 11.40 -77.06 -0.88 -11.40 16 20 C 0.21 5.30 8.88 113.37 1.01 6.31 16 21 O -0.33 -11.79 11.41 -77.18 -0.88 -12.67 16 22 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.09 2.26 7.95 -2.38 -0.02 2.24 16 24 H 0.09 2.40 8.13 -2.39 -0.02 2.38 16 25 H 0.19 9.78 5.67 -2.91 -0.02 9.77 16 26 H 0.28 13.34 8.30 -92.71 -0.77 12.57 16 27 H 0.12 5.39 8.06 -2.91 -0.02 5.37 16 28 H 0.15 4.61 7.96 -2.91 -0.02 4.58 16 29 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.16 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -64.96 264.06 4.72 -60.23 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 1.17 Total: 17.48 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: 4.75 Total: -29.04 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: -1.47 Total: -66.77 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -1.76 Total: -24.07 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -64.96 4.72 -60.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082595395.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.493 kcal (2) G-P(sol) polarization free energy of solvation -64.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds