Wall clock time and date at job start Mon Mar 30 2020 03:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37504 * 124.84865 * 2 1 4 4 C 1.39359 * 125.67389 * 0.03288 * 3 2 1 5 5 H 1.07994 * 120.00072 * 217.94118 * 4 3 2 6 6 C 1.40688 * 119.99870 * 37.94212 * 4 3 2 7 7 N 1.30432 * 119.99738 * 20.93370 * 6 4 3 8 8 Si 1.86793 * 119.99992 * 200.92829 * 6 4 3 9 9 H 1.48503 * 109.46783 * 90.00130 * 8 6 4 10 10 H 1.48498 * 109.47219 * 210.00047 * 8 6 4 11 11 H 1.48500 * 109.47096 * 330.00527 * 8 6 4 12 12 C 1.41073 * 108.65587 * 179.87327 * 3 2 1 13 13 C 1.46611 * 126.91607 * 180.11851 * 12 3 2 14 14 O 1.21629 * 119.99503 * 269.03185 * 13 12 3 15 15 O 1.34915 * 120.00427 * 89.03077 * 13 12 3 16 16 C 1.46561 * 106.17071 * 0.38541 * 12 3 2 17 17 C 1.39923 * 133.46892 * 179.79279 * 16 12 3 18 18 C 1.36561 * 119.78403 * 180.02562 * 17 16 12 19 19 C 1.38939 * 120.46834 * 359.95384 * 18 17 16 20 20 C 1.37866 * 120.73973 * 0.02562 * 19 18 17 21 21 C 1.37917 * 124.85869 * 180.31464 * 2 1 3 22 22 H 1.09000 * 109.46787 * 269.71064 * 1 2 3 23 23 H 1.09003 * 109.47018 * 149.71989 * 1 2 3 24 24 H 1.08996 * 109.47369 * 29.71406 * 1 2 3 25 25 H 0.97003 * 119.99510 * 180.02562 * 7 6 4 26 26 H 0.96698 * 114.00299 * 179.97438 * 15 13 12 27 27 H 1.08003 * 120.10642 * 0.02562 * 17 16 12 28 28 H 1.07997 * 119.76813 * 179.97438 * 18 17 16 29 29 H 1.08002 * 119.63184 * 180.02562 * 19 18 17 30 30 H 1.07996 * 120.04718 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2507 1.1284 0.0000 4 6 1.7860 2.4423 0.0006 5 1 2.3011 3.1975 -0.5744 6 6 0.6459 2.7848 0.7505 7 7 0.2642 2.0260 1.7403 8 14 -0.3209 4.3263 0.3285 9 1 -1.3771 3.9929 -0.6607 10 1 -0.9494 4.8690 1.5597 11 1 0.5950 5.3426 -0.2490 12 6 3.6055 0.7350 0.0030 13 6 4.7780 1.6151 0.0064 14 8 5.2775 1.9667 -1.0454 15 8 5.3029 2.0351 1.1761 16 6 3.6049 -0.7306 -0.0047 17 6 4.6200 -1.6935 -0.0096 18 6 4.2965 -3.0202 -0.0170 19 6 2.9661 -3.4209 -0.0188 20 6 1.9496 -2.4896 -0.0136 21 6 2.2532 -1.1317 -0.0062 22 1 -0.3633 -0.0052 1.0277 23 1 -0.3633 -0.8875 -0.5182 24 1 -0.3634 0.8925 -0.5094 25 1 -0.5221 2.2620 2.2570 26 1 6.0736 2.6108 1.0773 27 1 5.6561 -1.3885 -0.0075 28 1 5.0802 -3.7633 -0.0213 29 1 2.7256 -4.4738 -0.0243 30 1 0.9194 -2.8135 -0.0146 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108275255.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:16 Heat of formation + Delta-G solvation = -48.847852 kcal Electronic energy + Delta-G solvation = -17396.884890 eV Core-core repulsion = 14542.846542 eV Total energy + Delta-G solvation = -2854.038348 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.03659 -38.64725 -36.31600 -34.92597 -33.64921 -31.77174 -29.31418 -29.00097 -25.91772 -25.65720 -22.30595 -21.29714 -20.39353 -18.97549 -17.50011 -16.96450 -16.28147 -15.45558 -15.27438 -14.42583 -14.19767 -14.01992 -13.98569 -13.15411 -12.99289 -12.47783 -12.21552 -11.93826 -11.77374 -11.53074 -11.46756 -11.07258 -10.73921 -10.56233 -10.41872 -10.22687 -10.06216 -9.55108 -9.23692 -8.60718 -7.35984 -7.06396 -6.63918 -4.83097 2.11005 2.55826 2.77788 2.90106 2.94679 3.26665 3.56359 3.68827 4.02363 4.40512 4.73995 4.94476 5.59646 5.73290 5.76147 5.92522 6.17904 6.28969 6.39960 6.48478 6.57447 6.71492 6.79910 6.88820 7.02745 7.24760 7.35012 7.41676 7.61181 7.68185 7.78599 8.13888 8.27595 8.57198 8.77592 8.98163 9.77527 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.021830 B = 0.010004 C = 0.007346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.321218 B = 2798.318883 C = 3810.908060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.483 5.483 3 C 0.359 3.641 4 C -0.472 4.472 5 H 0.102 0.898 6 C 0.082 3.918 7 N -0.781 5.781 8 Si 0.913 3.087 9 H -0.264 1.264 10 H -0.274 1.274 11 H -0.257 1.257 12 C -0.387 4.387 13 C 0.595 3.405 14 O -0.542 6.542 15 O -0.507 6.507 16 C -0.016 4.016 17 C -0.121 4.121 18 C -0.140 4.140 19 C -0.154 4.154 20 C -0.120 4.120 21 C 0.072 3.928 22 H 0.073 0.927 23 H 0.049 0.951 24 H 0.070 0.930 25 H 0.289 0.711 26 H 0.384 0.616 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.257 -2.555 0.013 2.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.168 5.168 3 C 0.250 3.750 4 C -0.505 4.505 5 H 0.120 0.880 6 C -0.140 4.140 7 N -0.406 5.406 8 Si 0.737 3.263 9 H -0.189 1.189 10 H -0.199 1.199 11 H -0.180 1.180 12 C -0.392 4.392 13 C 0.441 3.559 14 O -0.432 6.432 15 O -0.314 6.314 16 C -0.021 4.021 17 C -0.140 4.140 18 C -0.159 4.159 19 C -0.173 4.173 20 C -0.142 4.142 21 C -0.031 4.031 22 H 0.092 0.908 23 H 0.068 0.932 24 H 0.089 0.911 25 H 0.101 0.899 26 H 0.238 0.762 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.954 -2.774 -0.018 3.393 hybrid contribution -0.098 1.021 0.003 1.025 sum -2.052 -1.753 -0.015 2.699 Atomic orbital electron populations 1.21744 0.78521 1.00910 1.02580 1.44076 1.05148 1.03826 1.63798 1.17382 0.85600 0.86095 0.85953 1.18832 1.11138 0.92844 1.27673 0.87994 1.25995 0.96211 0.98996 0.92793 1.69695 1.21820 1.37284 1.11769 0.86193 0.79883 0.81106 0.79156 1.18881 1.19897 1.18025 1.18483 0.90099 0.89548 1.41067 1.19979 0.80828 0.75230 0.79886 1.90769 1.62164 1.56629 1.33612 1.85322 1.46449 1.63351 1.36300 1.18632 0.91817 0.91210 1.00418 1.20048 0.97234 0.92138 1.04608 1.20302 0.95714 0.95031 1.04897 1.20394 0.92421 0.97542 1.06944 1.19872 0.98418 0.89651 1.06224 1.18177 0.90182 0.87970 1.06769 0.90841 0.93224 0.91103 0.89933 0.76168 0.87834 0.87601 0.87419 0.87729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.11 9.07 59.85 0.54 2.65 16 2 N -0.48 -11.54 3.14 -118.72 -0.37 -11.91 16 3 C 0.36 9.35 6.10 -83.83 -0.51 8.84 16 4 C -0.47 -11.86 8.70 -38.24 -0.33 -12.20 16 5 H 0.10 2.57 7.94 -52.49 -0.42 2.16 16 6 C 0.08 1.86 3.92 -17.22 -0.07 1.79 16 7 N -0.78 -17.95 10.52 55.59 0.58 -17.37 16 8 Si 0.91 17.01 29.61 -169.99 -5.03 11.97 16 9 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 10 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 11 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 12 C -0.39 -10.11 6.26 -102.09 -0.64 -10.75 16 13 C 0.60 14.62 7.91 34.11 0.27 14.89 16 14 O -0.54 -13.93 17.85 -19.36 -0.35 -14.28 16 15 O -0.51 -10.64 13.56 -41.08 -0.56 -11.20 16 16 C -0.02 -0.40 6.33 -104.87 -0.66 -1.06 16 17 C -0.12 -2.62 10.06 -39.56 -0.40 -3.02 16 18 C -0.14 -2.63 9.98 -39.93 -0.40 -3.02 16 19 C -0.15 -2.81 10.02 -39.46 -0.40 -3.21 16 20 C -0.12 -2.41 9.87 -39.38 -0.39 -2.80 16 21 C 0.07 1.69 6.78 -83.75 -0.57 1.12 16 22 H 0.07 1.50 6.86 -51.93 -0.36 1.14 16 23 H 0.05 0.85 7.93 -51.93 -0.41 0.44 16 24 H 0.07 1.42 6.80 -51.93 -0.35 1.07 16 25 H 0.29 5.97 8.29 -40.82 -0.34 5.63 16 26 H 0.38 5.77 8.98 45.56 0.41 6.18 16 27 H 0.10 2.09 8.06 -52.48 -0.42 1.67 16 28 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 29 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.10 1.82 7.94 -52.49 -0.42 1.41 16 LS Contribution 269.89 15.07 4.07 4.07 Total: -1.00 -29.65 269.89 -7.15 -36.80 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -1.95 Total: 8.67 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -3.55 Total: -6.76 kcal Atomic # 7 Polarization: -29.49 SS G_CDS: 0.21 Total: -29.28 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.90 Total: -25.47 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.03 Total: 11.97 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.65 -7.15 -36.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108275255.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.045 kcal (2) G-P(sol) polarization free energy of solvation -29.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds