Wall clock time and date at job start Mon Mar 30 2020 03:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21343 * 119.99747 * 2 1 4 4 C 1.46579 * 120.00051 * 180.02562 * 2 1 3 5 5 C 1.40321 * 119.59847 * 84.00941 * 4 2 1 6 6 C 1.50701 * 119.38082 * 359.97438 * 5 4 2 7 7 C 1.35948 * 121.24058 * 180.02562 * 5 4 2 8 8 C 1.41048 * 120.34319 * 359.97438 * 7 5 4 9 9 C 1.40534 * 120.40788 * 180.02562 * 8 7 5 10 10 H 1.07994 * 119.99891 * 210.40548 * 9 8 7 11 11 C 1.40524 * 119.99663 * 30.39752 * 9 8 7 12 12 N 1.30488 * 120.00353 * 24.79120 * 11 9 8 13 13 Si 1.86798 * 119.99896 * 204.78294 * 11 9 8 14 14 H 1.48498 * 109.47428 * 270.00328 * 13 11 9 15 15 H 1.48499 * 109.47124 * 30.00219 * 13 11 9 16 16 H 1.48506 * 109.47158 * 150.00608 * 13 11 9 17 17 C 1.46545 * 119.18963 * 0.27042 * 8 7 5 18 18 C 1.43195 * 120.58229 * 179.70332 * 17 8 7 19 19 N 5.95378 * 117.26563 * 139.81648 * 2 1 3 20 20 C 1.39881 * 118.83252 * 359.45527 * 17 8 7 21 21 O 1.35408 * 120.20075 * 180.28613 * 20 17 8 22 22 H 1.08997 * 109.47226 * 275.09292 * 1 2 3 23 23 H 1.09002 * 109.47296 * 35.09220 * 1 2 3 24 24 H 1.09002 * 109.46848 * 155.08705 * 1 2 3 25 25 H 1.08996 * 109.47149 * 272.74617 * 6 5 4 26 26 H 1.09004 * 109.46742 * 32.74329 * 6 5 4 27 27 H 1.08999 * 109.47100 * 152.74897 * 6 5 4 28 28 H 1.07996 * 119.83099 * 179.97438 * 7 5 4 29 29 H 0.97001 * 119.99528 * 5.73715 * 12 11 9 30 30 H 0.96694 * 114.00039 * 274.04273 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1137 1.0509 0.0000 4 6 2.2399 -1.2694 -0.0006 5 6 2.4762 -1.9327 -1.2143 6 6 1.9706 -1.3273 -2.4984 7 6 3.1517 -3.1119 -1.2535 8 6 3.6334 -3.6970 -0.0640 9 6 4.3323 -4.9156 -0.1030 10 1 4.2771 -5.5967 0.7332 11 6 5.1028 -5.2478 -1.2302 12 7 5.5732 -4.3050 -2.0000 13 14 5.4540 -7.0391 -1.6266 14 1 6.7095 -7.4583 -0.9534 15 1 4.3297 -7.8820 -1.1463 16 1 5.6020 -7.2013 -3.0953 17 6 3.3914 -3.0214 1.2138 18 6 3.8616 -3.5921 2.4401 19 7 4.2346 -4.0432 3.4148 20 6 2.6977 -1.8068 1.2138 21 8 2.4639 -1.1560 2.3780 22 1 -0.3633 0.0912 1.0236 23 1 -0.3634 0.8409 -0.5908 24 1 -0.3633 -0.9321 -0.4329 25 1 0.9461 -1.6543 -2.6756 26 1 1.9971 -0.2402 -2.4226 27 1 2.6030 -1.6494 -3.3257 28 1 3.3204 -3.6031 -2.2004 29 1 5.4624 -3.3743 -1.7499 30 1 1.6643 -1.4468 2.8375 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238119055.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:18 Heat of formation + Delta-G solvation = -73.799079 kcal Electronic energy + Delta-G solvation = -17069.849256 eV Core-core repulsion = 14214.728941 eV Total energy + Delta-G solvation = -2855.120315 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.09993 -39.40781 -38.18638 -37.12807 -35.96632 -33.17678 -31.60647 -30.24233 -28.26270 -27.65130 -23.78492 -23.05818 -21.38234 -20.22849 -18.64523 -18.58764 -17.43381 -16.47613 -16.37135 -15.94942 -15.70052 -15.21404 -15.00667 -14.71793 -14.36274 -14.19579 -13.97735 -13.76557 -13.48055 -13.14472 -13.02212 -12.89864 -12.67289 -12.32530 -12.14609 -11.98414 -11.92156 -11.55481 -11.04667 -10.53587 -9.67818 -9.56299 -9.29926 -6.80489 0.15784 0.51898 1.07756 1.49867 1.55987 1.80107 1.91414 2.12223 2.22051 2.50784 3.15671 3.22430 3.33337 3.58604 4.13303 4.32934 4.43548 4.59264 4.70805 4.76164 4.81019 4.86067 5.05258 5.12557 5.17813 5.35925 5.42410 5.49099 5.66692 5.86131 5.94210 6.38765 6.46780 6.65747 6.77091 6.86408 7.74344 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.023957 B = 0.008419 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.481209 B = 3324.932990 C = 4219.330485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.434 3.566 3 O -0.509 6.509 4 C -0.327 4.327 5 C 0.015 3.985 6 C -0.116 4.116 7 C -0.223 4.223 8 C 0.130 3.870 9 C -0.496 4.496 10 H 0.075 0.925 11 C 0.012 3.988 12 N -0.767 5.767 13 Si 1.113 2.887 14 H -0.267 1.267 15 H -0.259 1.259 16 H -0.256 1.256 17 C -0.242 4.242 18 C 0.306 3.694 19 N -0.520 5.520 20 C 0.236 3.764 21 O -0.509 6.509 22 H 0.112 0.888 23 H 0.097 0.903 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.115 0.885 29 H 0.294 0.706 30 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.010 0.951 -4.198 10.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.313 3.687 3 O -0.386 6.386 4 C -0.330 4.330 5 C 0.014 3.986 6 C -0.172 4.172 7 C -0.242 4.242 8 C 0.124 3.876 9 C -0.522 4.522 10 H 0.093 0.907 11 C -0.211 4.211 12 N -0.387 5.387 13 Si 0.929 3.071 14 H -0.192 1.192 15 H -0.183 1.183 16 H -0.180 1.180 17 C -0.248 4.248 18 C -0.003 4.003 19 N -0.200 5.200 20 C 0.189 3.811 21 O -0.323 6.323 22 H 0.130 0.870 23 H 0.115 0.885 24 H 0.120 0.880 25 H 0.119 0.881 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.133 0.867 29 H 0.107 0.893 30 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -7.883 0.199 -3.965 8.826 hybrid contribution -0.831 0.954 1.295 1.810 sum -8.714 1.153 -2.670 9.187 Atomic orbital electron populations 1.22283 0.90519 1.05920 1.05909 1.22630 0.93114 0.86158 0.66779 1.90495 1.73945 1.36000 1.38166 1.19732 1.17292 1.02964 0.92986 1.19349 0.93184 0.92346 0.93753 1.20939 1.02914 0.99916 0.93431 1.20602 1.07391 0.99006 0.97193 1.18629 0.88821 0.90617 0.89491 1.21035 1.24174 1.02201 1.04792 0.90678 1.28609 0.91200 1.10722 0.90519 1.70420 1.28401 1.04395 1.35465 0.83044 0.78315 0.67275 0.78486 1.19184 1.18340 1.18008 1.17262 1.20679 0.99050 0.87839 1.25677 0.91373 0.91266 0.91954 1.81035 1.14256 1.11823 1.12866 1.18033 0.91522 0.86944 0.84644 1.84590 1.49959 1.63217 1.34490 0.86977 0.88462 0.88026 0.88074 0.92171 0.90880 0.86679 0.89286 0.73230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.96 10.26 71.24 0.73 -3.23 16 2 C 0.43 14.40 4.53 27.86 0.13 14.53 16 3 O -0.51 -20.79 17.86 -3.23 -0.06 -20.84 16 4 C -0.33 -12.39 5.52 -20.05 -0.11 -12.50 16 5 C 0.01 0.56 5.87 -19.89 -0.12 0.44 16 6 C -0.12 -3.28 9.51 71.24 0.68 -2.60 16 7 C -0.22 -9.42 7.52 22.43 0.17 -9.25 16 8 C 0.13 6.11 5.35 -19.86 -0.11 6.01 16 9 C -0.50 -23.79 8.41 23.39 0.20 -23.60 16 10 H 0.08 3.71 7.55 -2.91 -0.02 3.69 16 11 C 0.01 0.54 4.92 85.45 0.42 0.96 16 12 N -0.77 -35.72 12.48 21.92 0.27 -35.45 16 13 Si 1.11 37.68 30.01 68.60 2.06 39.74 16 14 H -0.27 -8.82 7.11 99.48 0.71 -8.11 16 15 H -0.26 -8.29 7.11 99.48 0.71 -7.58 16 16 H -0.26 -8.20 7.11 99.48 0.71 -7.49 16 17 C -0.24 -11.12 5.96 -19.47 -0.12 -11.24 16 18 C 0.31 14.68 13.91 88.32 1.23 15.91 16 19 N -0.52 -25.49 18.54 19.01 0.35 -25.14 16 20 C 0.24 9.69 6.72 23.21 0.16 9.84 16 21 O -0.51 -18.63 12.37 -87.02 -1.08 -19.71 16 22 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 24 H 0.10 1.79 8.08 -2.39 -0.02 1.77 16 25 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.06 1.70 7.11 -2.39 -0.02 1.68 16 27 H 0.07 2.01 8.03 -2.39 -0.02 1.99 16 28 H 0.12 4.88 6.84 -2.91 -0.02 4.86 16 29 H 0.29 14.31 6.87 -92.71 -0.64 13.68 16 30 H 0.41 10.28 9.06 -74.06 -0.67 9.61 16 Total: -1.00 -61.68 279.00 5.46 -56.21 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.66 Total: 19.91 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 3.25 Total: -14.72 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: 0.63 Total: -60.59 kcal Atomic # 8 Polarization: -39.42 SS G_CDS: -1.13 Total: -40.55 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.06 Total: 39.74 kcal Total: -61.68 5.46 -56.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238119055.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.585 kcal (2) G-P(sol) polarization free energy of solvation -61.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds