Wall clock time and date at job start Mon Mar 30 2020 03:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50702 * 109.47249 * 2 1 4 4 H 1.07996 * 120.00147 * 244.88709 * 3 2 1 5 5 C 1.37882 * 119.99717 * 64.88434 * 3 2 1 6 6 N 1.31513 * 119.99684 * 0.02562 * 5 3 2 7 7 Si 1.86800 * 119.99746 * 180.02562 * 5 3 2 8 8 H 1.48498 * 109.47261 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.47128 * 120.00606 * 7 5 3 10 10 H 1.48510 * 109.46957 * 240.00020 * 7 5 3 11 11 C 1.50696 * 109.47542 * 120.00310 * 2 1 3 12 12 O 1.20830 * 119.99917 * 359.97438 * 11 2 1 13 13 O 1.34231 * 120.00036 * 180.02562 * 11 2 1 14 14 C 1.50705 * 109.47036 * 240.00519 * 2 1 3 15 15 C 1.38363 * 119.84938 * 174.00158 * 14 2 1 16 16 C 1.37949 * 120.14906 * 179.76396 * 15 14 2 17 17 C 1.39626 * 119.84483 * 0.52855 * 16 15 14 18 18 C 1.43204 * 120.14588 * 179.69899 * 17 16 15 19 19 N 6.84438 * 109.46644 * 240.03855 * 2 1 3 20 20 C 1.39627 * 119.70485 * 359.72461 * 17 16 15 21 21 C 1.37947 * 119.84238 * 0.02562 * 20 17 16 22 22 H 1.09003 * 109.47141 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.46687 * 299.99563 * 1 2 3 24 24 H 1.09001 * 109.47661 * 59.99464 * 1 2 3 25 25 H 0.97006 * 119.99582 * 179.97438 * 6 5 3 26 26 H 0.96700 * 116.99697 * 180.02562 * 13 11 2 27 27 H 1.07998 * 119.92153 * 359.97438 * 15 14 2 28 28 H 1.08000 * 120.07111 * 180.25497 * 16 15 14 29 29 H 1.08000 * 120.08010 * 179.97438 * 20 17 16 30 30 H 1.08002 * 119.92487 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 1 2.5865 1.7976 -0.8468 5 6 1.7843 2.2397 1.0812 6 7 1.1097 1.7806 2.1126 7 14 2.4063 4.0011 1.0809 8 1 3.1306 4.2700 -0.1872 9 1 1.2559 4.9324 1.2005 10 1 3.3266 4.2012 2.2292 11 6 2.0324 -0.7104 1.2304 12 8 1.2472 -1.1693 2.0260 13 8 3.3521 -0.8326 1.4430 14 6 2.0323 -0.7103 -1.2306 15 6 3.3871 -0.7274 -1.5111 16 6 3.8541 -1.3799 -2.6332 17 6 2.9551 -2.0146 -3.4926 18 6 3.4323 -2.6883 -4.6626 19 7 3.8109 -3.2228 -5.5907 20 6 1.5887 -1.9889 -3.2063 21 6 1.1359 -1.3371 -2.0780 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 0.9355 2.3566 2.8735 26 1 3.6263 -1.2966 2.2458 27 1 4.0807 -0.2317 -0.8482 28 1 4.9123 -1.3960 -2.8487 29 1 0.8880 -2.4774 -3.8671 30 1 0.0793 -1.3161 -1.8555 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259577926.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:02 Heat of formation + Delta-G solvation = -60.986830 kcal Electronic energy + Delta-G solvation = -17234.352147 eV Core-core repulsion = 14379.787413 eV Total energy + Delta-G solvation = -2854.564734 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.24877 -39.93891 -37.64106 -36.65484 -35.95965 -33.63595 -31.96487 -30.40672 -27.49604 -25.73438 -24.07533 -23.13480 -21.06926 -19.73297 -19.04580 -18.17467 -17.47782 -16.66775 -16.10330 -15.82045 -15.40889 -15.25031 -14.96372 -14.44064 -14.16958 -14.04797 -13.90053 -13.60189 -13.14658 -12.88185 -12.78433 -12.71929 -12.42289 -12.23187 -11.98383 -11.84413 -11.66134 -11.31268 -10.88907 -10.55399 -9.78482 -9.51662 -8.15453 -6.33375 -0.07970 0.59032 1.44600 1.49836 1.59791 1.66310 1.94679 2.02332 2.43689 2.78771 2.94934 3.14217 3.22961 4.08032 4.12289 4.13574 4.59524 4.65929 4.85661 4.89040 4.99251 5.08630 5.26956 5.32940 5.46763 5.51345 5.63465 5.81474 5.99983 6.04048 6.08325 6.17935 6.49486 6.72150 7.36132 7.63138 8.85503 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.027508 B = 0.007377 C = 0.006787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.633407 B = 3794.866844 C = 4124.722295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.102 3.898 3 C -0.511 4.511 4 H 0.078 0.922 5 C 0.021 3.979 6 N -0.903 5.903 7 Si 0.959 3.041 8 H -0.259 1.259 9 H -0.284 1.284 10 H -0.287 1.287 11 C 0.512 3.488 12 O -0.568 6.568 13 O -0.514 6.514 14 C -0.036 4.036 15 C -0.105 4.105 16 C -0.064 4.064 17 C -0.054 4.054 18 C 0.289 3.711 19 N -0.469 5.469 20 C -0.060 4.060 21 C -0.131 4.131 22 H 0.039 0.961 23 H 0.050 0.950 24 H 0.062 0.938 25 H 0.263 0.737 26 H 0.400 0.600 27 H 0.134 0.866 28 H 0.151 0.849 29 H 0.156 0.844 30 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.751 -3.683 -5.972 7.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.101 3.899 3 C -0.549 4.549 4 H 0.096 0.904 5 C -0.181 4.181 6 N -0.540 5.540 7 Si 0.784 3.216 8 H -0.183 1.183 9 H -0.210 1.210 10 H -0.213 1.213 11 C 0.358 3.642 12 O -0.459 6.459 13 O -0.325 6.325 14 C -0.037 4.037 15 C -0.123 4.123 16 C -0.084 4.084 17 C -0.057 4.057 18 C -0.025 4.025 19 N -0.145 5.145 20 C -0.080 4.080 21 C -0.149 4.149 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.258 0.742 27 H 0.152 0.848 28 H 0.169 0.831 29 H 0.173 0.827 30 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.941 -4.373 -7.396 9.082 hybrid contribution 0.121 1.007 1.645 1.932 sum 3.062 -3.367 -5.752 7.334 Atomic orbital electron populations 1.21627 0.94457 0.99291 1.01947 1.17252 0.94190 0.93802 0.84704 1.21135 1.35982 0.93697 1.04067 0.90436 1.25781 0.94646 1.02511 0.95122 1.70091 1.39362 1.37454 1.07068 0.85471 0.77933 0.79773 0.78374 1.18268 1.21043 1.21278 1.24253 0.78977 0.72875 0.88131 1.90492 1.57913 1.48793 1.48685 1.84552 1.26832 1.73415 1.47692 1.20297 0.94518 0.93787 0.95057 1.21117 0.95323 0.98706 0.97179 1.21288 1.00127 0.94552 0.92465 1.15994 0.94440 1.03712 0.91568 1.25763 0.92259 0.92094 0.92347 1.81231 1.09402 1.11569 1.12337 1.21283 0.93450 0.96865 0.96419 1.21313 1.00962 0.98058 0.94518 0.94217 0.93079 0.91915 0.92761 0.74199 0.84777 0.83148 0.82665 0.83871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.98 6.26 71.98 0.45 -4.53 16 2 C 0.10 4.43 0.54 -54.42 -0.03 4.40 16 3 C -0.51 -24.07 7.41 25.60 0.19 -23.88 16 4 H 0.08 3.54 7.51 -2.91 -0.02 3.52 16 5 C 0.02 1.03 5.15 84.66 0.44 1.46 16 6 N -0.90 -48.32 10.39 21.45 0.22 -48.09 16 7 Si 0.96 39.82 29.54 68.60 2.03 41.85 16 8 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 9 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 10 H -0.29 -12.01 7.11 99.48 0.71 -11.30 16 11 C 0.51 23.64 5.40 71.23 0.38 24.02 16 12 O -0.57 -29.43 16.57 21.95 0.36 -29.07 16 13 O -0.51 -20.12 11.90 -51.43 -0.61 -20.73 16 14 C -0.04 -1.25 4.72 -19.80 -0.09 -1.34 16 15 C -0.11 -3.30 8.30 22.23 0.18 -3.12 16 16 C -0.06 -1.61 9.76 22.54 0.22 -1.39 16 17 C -0.05 -1.31 5.73 -21.36 -0.12 -1.43 16 18 C 0.29 7.41 15.33 88.33 1.35 8.77 16 19 N -0.47 -13.75 18.54 19.00 0.35 -13.39 16 20 C -0.06 -1.42 9.76 22.54 0.22 -1.20 16 21 C -0.13 -3.80 8.97 22.23 0.20 -3.60 16 22 H 0.04 1.56 7.19 -2.39 -0.02 1.54 16 23 H 0.05 2.58 6.43 -2.38 -0.02 2.56 16 24 H 0.06 2.42 7.77 -2.39 -0.02 2.40 16 25 H 0.26 13.73 8.31 -92.70 -0.77 12.95 16 26 H 0.40 12.16 9.10 -74.06 -0.67 11.49 16 27 H 0.13 4.45 7.16 -2.91 -0.02 4.42 16 28 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 29 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 30 H 0.14 3.90 5.88 -2.91 -0.02 3.89 16 Total: -1.00 -61.05 271.06 6.26 -54.78 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.52 Total: 16.51 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 3.39 Total: -1.85 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: 0.58 Total: -61.49 kcal Atomic # 8 Polarization: -49.55 SS G_CDS: -0.25 Total: -49.80 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -61.05 6.26 -54.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259577926.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.203 kcal (2) G-P(sol) polarization free energy of solvation -61.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds