Wall clock time and date at job start Mon Mar 30 2020 03:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.38162 * 119.14474 * 2 1 4 4 C 1.38962 * 120.68827 * 0.02562 * 3 2 1 5 5 C 1.38431 * 119.73470 * 179.97438 * 4 3 2 6 6 O 1.35804 * 119.75376 * 180.02562 * 5 4 3 7 7 C 1.39255 * 120.48554 * 0.02562 * 5 4 3 8 8 C 1.36682 * 120.41641 * 359.97438 * 7 5 4 9 9 C 1.39427 * 119.84297 * 0.03805 * 8 7 5 10 10 C 1.47685 * 121.01261 * 179.97438 * 9 8 7 11 11 C 1.40693 * 120.99828 * 359.95977 * 10 9 8 12 12 H 1.08000 * 120.00062 * 330.83364 * 11 10 9 13 13 C 1.40509 * 120.00081 * 151.11285 * 11 10 9 14 14 N 1.30481 * 120.00096 * 161.57010 * 13 11 10 15 15 Si 1.86800 * 120.00106 * 341.56623 * 13 11 10 16 16 H 1.48508 * 109.47003 * 95.31877 * 15 13 11 17 17 H 1.48495 * 109.47578 * 215.32010 * 15 13 11 18 18 H 1.48496 * 109.46866 * 335.32323 * 15 13 11 19 19 C 1.39860 * 118.00028 * 180.23032 * 10 9 8 20 20 C 1.34275 * 119.13928 * 179.97438 * 2 1 3 21 21 O 1.21929 * 119.08603 * 359.97438 * 20 2 1 22 22 H 1.09003 * 109.46975 * 90.00458 * 1 2 3 23 23 H 1.08996 * 109.47363 * 210.00010 * 1 2 3 24 24 H 1.08998 * 109.46950 * 330.00253 * 1 2 3 25 25 H 1.07998 * 120.13587 * 0.02562 * 4 3 2 26 26 H 0.96702 * 113.99936 * 89.99998 * 6 5 4 27 27 H 1.08002 * 119.79688 * 179.97438 * 7 5 4 28 28 H 1.08001 * 120.08130 * 180.02562 * 8 7 5 29 29 H 0.97003 * 119.99628 * 179.97438 * 14 13 11 30 30 H 1.08000 * 120.16376 * 179.72725 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1379 1.2067 0.0000 4 6 1.4396 2.4081 0.0005 5 6 2.1338 3.6058 0.0011 6 8 1.4518 4.7801 0.0021 7 6 3.5263 3.6152 0.0005 8 6 4.2263 2.4412 0.0000 9 6 3.5428 1.2259 -0.0008 10 6 4.2731 -0.0578 -0.0020 11 6 5.6796 -0.0913 -0.0031 12 1 6.2385 0.7126 -0.4591 13 6 6.3571 -1.1734 0.5837 14 7 7.6064 -1.4010 0.2838 15 14 5.4693 -2.2861 1.7933 16 1 4.9396 -3.4738 1.0763 17 1 6.4170 -2.7266 2.8482 18 1 4.3453 -1.5423 2.4168 19 6 3.5244 -1.2391 -0.0077 20 6 2.1189 -1.1728 0.0005 21 8 1.4768 -2.2094 0.0015 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 0.3596 2.4075 0.0014 26 1 1.2546 5.1196 0.8858 27 1 4.0567 4.5560 0.0005 28 1 5.3062 2.4548 0.0000 29 1 8.0741 -2.1479 0.6892 30 1 4.0226 -2.1973 -0.0131 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260042144.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:29 Heat of formation + Delta-G solvation = -44.496612 kcal Electronic energy + Delta-G solvation = -17333.050329 eV Core-core repulsion = 14479.200665 eV Total energy + Delta-G solvation = -2853.849665 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.41981 -38.52651 -36.57619 -35.08437 -34.21362 -32.55368 -29.72662 -28.30637 -27.86669 -25.10845 -22.88575 -22.26050 -20.67623 -18.97709 -17.86273 -16.97534 -16.45385 -15.92785 -15.32913 -14.97507 -14.51061 -14.32906 -13.90974 -13.66878 -13.04122 -12.69976 -12.42089 -12.22793 -12.03659 -11.75560 -11.62944 -11.09274 -10.95659 -10.88019 -10.23042 -9.90827 -9.77308 -9.57666 -9.00165 -8.69443 -7.80321 -7.38072 -7.09414 -5.04256 1.29936 1.79151 2.63673 3.11345 3.14913 3.28335 3.57808 3.86295 3.92732 4.29723 4.46218 5.09588 5.14551 5.37629 5.49404 5.50901 5.74413 5.80205 5.92703 6.05238 6.15563 6.36403 6.58574 6.74477 6.78846 6.83482 6.94190 7.28056 7.30980 7.53358 7.84004 7.85888 8.09814 8.26121 8.42468 9.33632 9.57496 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.022744 B = 0.009889 C = 0.007257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.799883 B = 2830.756520 C = 3857.199563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.545 5.545 3 C 0.206 3.794 4 C -0.211 4.211 5 C 0.133 3.867 6 O -0.502 6.502 7 C -0.193 4.193 8 C -0.040 4.040 9 C -0.105 4.105 10 C 0.125 3.875 11 C -0.392 4.392 12 H 0.103 0.897 13 C 0.086 3.914 14 N -0.767 5.767 15 Si 0.930 3.070 16 H -0.262 1.262 17 H -0.292 1.292 18 H -0.242 1.242 19 C -0.449 4.449 20 C 0.543 3.457 21 O -0.605 6.605 22 H 0.056 0.944 23 H 0.083 0.917 24 H 0.069 0.931 25 H 0.130 0.870 26 H 0.386 0.614 27 H 0.124 0.876 28 H 0.139 0.861 29 H 0.297 0.703 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.356 8.762 2.884 10.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.262 5.262 3 C 0.104 3.896 4 C -0.233 4.233 5 C 0.088 3.912 6 O -0.312 6.312 7 C -0.213 4.213 8 C -0.059 4.059 9 C -0.108 4.108 10 C 0.120 3.880 11 C -0.417 4.417 12 H 0.121 0.879 13 C -0.140 4.140 14 N -0.387 5.387 15 Si 0.755 3.245 16 H -0.187 1.187 17 H -0.220 1.220 18 H -0.165 1.165 19 C -0.473 4.473 20 C 0.354 3.646 21 O -0.494 6.494 22 H 0.075 0.925 23 H 0.101 0.899 24 H 0.088 0.912 25 H 0.147 0.853 26 H 0.241 0.759 27 H 0.142 0.858 28 H 0.156 0.844 29 H 0.108 0.892 30 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.440 7.921 2.254 9.870 hybrid contribution -0.249 -0.368 0.878 0.984 sum -5.689 7.553 3.132 9.961 Atomic orbital electron populations 1.21740 0.79983 1.03144 1.02090 1.45215 1.06992 1.05385 1.68655 1.17717 0.91174 0.85343 0.95396 1.20831 0.99911 0.90432 1.12083 1.18166 0.89687 0.84179 0.99140 1.84766 1.76568 1.36617 1.33207 1.20917 0.93001 0.98789 1.08560 1.20765 1.00487 0.90128 0.94477 1.19090 0.90335 0.95107 1.06314 1.18654 0.93043 0.89025 0.87262 1.19710 0.90076 1.04726 1.27200 0.87893 1.26466 0.94748 0.96354 0.96457 1.69505 1.11016 1.25268 1.32917 0.85910 0.79101 0.80474 0.79004 1.18718 1.21979 1.16541 1.21214 0.90461 0.97694 1.37948 1.16802 0.89266 0.81099 0.77475 1.90700 1.69270 1.31914 1.57510 0.92489 0.89866 0.91241 0.85262 0.75891 0.85835 0.84372 0.89200 0.86051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 9.79 59.85 0.59 1.83 16 2 N -0.55 -11.82 3.04 -124.46 -0.38 -12.20 16 3 C 0.21 4.16 6.52 -83.89 -0.55 3.62 16 4 C -0.21 -3.51 9.11 -39.24 -0.36 -3.87 16 5 C 0.13 2.05 6.70 -39.13 -0.26 1.79 16 6 O -0.50 -6.39 13.48 -19.13 -0.26 -6.65 16 7 C -0.19 -3.00 9.91 -39.77 -0.39 -3.40 16 8 C -0.04 -0.72 9.41 -39.70 -0.37 -1.09 16 9 C -0.11 -2.24 5.89 -104.74 -0.62 -2.86 16 10 C 0.13 3.04 5.29 -104.51 -0.55 2.49 16 11 C -0.39 -9.49 8.97 -37.80 -0.34 -9.83 16 12 H 0.10 2.45 7.04 -52.49 -0.37 2.08 16 13 C 0.09 2.07 5.42 -17.27 -0.09 1.98 16 14 N -0.77 -18.36 13.91 55.58 0.77 -17.59 16 15 Si 0.93 20.99 24.55 -169.99 -4.17 16.82 16 16 H -0.26 -6.17 6.72 56.52 0.38 -5.79 16 17 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.24 -5.76 6.86 56.52 0.39 -5.37 16 19 C -0.45 -11.75 7.19 -38.04 -0.27 -12.02 16 20 C 0.54 14.00 7.39 -15.55 -0.11 13.88 16 21 O -0.60 -16.88 16.45 4.98 0.08 -16.80 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.08 1.47 7.30 -51.93 -0.38 1.09 16 24 H 0.07 0.94 6.12 -51.93 -0.32 0.62 16 25 H 0.13 1.86 6.12 -52.49 -0.32 1.54 16 26 H 0.39 2.92 9.06 45.56 0.41 3.33 16 27 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.14 2.35 6.72 -52.49 -0.35 2.00 16 29 H 0.30 6.41 8.29 -40.82 -0.34 6.07 16 30 H 0.12 3.30 4.72 -52.49 -0.25 3.05 16 LS Contribution 255.30 15.07 3.85 3.85 Total: -1.00 -30.49 255.30 -5.04 -35.53 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -1.59 Total: 4.52 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -3.34 Total: -7.48 kcal Atomic # 7 Polarization: -30.18 SS G_CDS: 0.40 Total: -29.79 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.18 Total: -23.45 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.17 Total: 16.82 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.49 -5.04 -35.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260042144.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.965 kcal (2) G-P(sol) polarization free energy of solvation -30.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds