Wall clock time and date at job start Mon Mar 30 2020 03:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47058 * 25.21664 * 3 2 1 5 5 C 1.37178 * 119.99887 * 264.18517 * 4 3 2 6 6 H 1.07996 * 119.99656 * 200.54549 * 5 4 3 7 7 C 1.38888 * 120.00092 * 20.55480 * 5 4 3 8 8 N 1.31461 * 120.00039 * 10.86350 * 7 5 4 9 9 Si 1.86797 * 120.00203 * 190.86924 * 7 5 4 10 10 H 1.48500 * 109.47253 * 89.99349 * 9 7 5 11 11 H 1.48493 * 109.47310 * 209.99450 * 9 7 5 12 12 H 1.48505 * 109.46782 * 329.99912 * 9 7 5 13 13 C 1.34779 * 120.00039 * 84.18575 * 4 3 2 14 14 O 1.21514 * 119.99852 * 179.97438 * 13 4 3 15 15 O 1.34700 * 120.00052 * 0.02562 * 13 4 3 16 16 C 1.35924 * 117.00056 * 185.09117 * 15 13 4 17 17 C 1.38734 * 120.05673 * 75.03239 * 16 15 13 18 18 C 1.38136 * 119.94795 * 179.97438 * 17 16 15 19 19 C 1.38276 * 120.05349 * 0.02562 * 18 17 16 20 20 C 1.38265 * 120.11035 * 359.97438 * 19 18 17 21 21 C 1.38153 * 120.05574 * 0.02562 * 20 19 18 22 22 H 4.40645 * 5.51371 * 179.97438 * 4 1 2 23 23 H 1.08993 * 109.47189 * 265.21580 * 3 2 1 24 24 H 1.08993 * 109.46769 * 145.21171 * 3 2 1 25 25 H 0.96999 * 120.00165 * 180.02562 * 8 7 5 26 26 H 1.08004 * 120.02515 * 359.70386 * 17 16 15 27 27 H 1.08000 * 119.97462 * 180.02562 * 18 17 16 28 28 H 1.07996 * 119.94337 * 179.97438 * 19 18 17 29 29 H 1.07996 * 119.97260 * 179.97438 * 20 19 18 30 30 H 1.07998 * 120.02369 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1350 -1.2487 -0.5885 5 6 3.4775 -2.3008 0.2224 6 1 4.1314 -3.0768 -0.1473 7 6 2.9833 -2.3682 1.5186 8 7 2.0271 -1.5511 1.9008 9 14 3.6775 -3.6198 2.7190 10 1 4.8221 -3.0212 3.4516 11 1 2.6229 -4.0154 3.6867 12 1 4.1395 -4.8178 1.9729 13 6 3.2482 -1.3644 -1.9265 14 8 3.6541 -2.4006 -2.4145 15 8 2.9123 -0.3311 -2.7227 16 6 2.9483 -0.5485 -4.0640 17 6 1.9490 -1.2926 -4.6743 18 6 1.9875 -1.5117 -6.0377 19 6 3.0212 -0.9904 -6.7939 20 6 4.0183 -0.2485 -6.1880 21 6 3.9842 -0.0266 -4.8248 22 1 -1.0498 -0.0004 0.0000 23 1 3.0094 0.0865 1.0240 24 1 3.0090 0.8448 -0.5863 25 1 1.6821 -1.5979 2.8062 26 1 1.1440 -1.7040 -4.0834 27 1 1.2097 -2.0905 -6.5134 28 1 3.0498 -1.1631 -7.8596 29 1 4.8248 0.1572 -6.7807 30 1 4.7635 0.5526 -4.3520 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304160813.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:38 Heat of formation + Delta-G solvation = 13.480260 kcal Electronic energy + Delta-G solvation = -17057.566472 eV Core-core repulsion = 14206.230873 eV Total energy + Delta-G solvation = -2851.335599 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.02213 -39.82584 -38.11423 -36.91414 -33.97344 -33.19545 -31.95879 -30.99708 -28.41146 -26.95241 -24.17289 -23.66793 -21.93191 -19.88595 -19.41630 -18.69620 -18.36843 -17.33199 -17.26153 -16.62423 -15.80736 -15.72602 -15.21570 -14.75901 -14.57419 -14.40761 -14.09935 -13.50509 -13.42502 -12.90682 -12.78038 -12.60087 -12.50447 -12.14745 -11.65794 -11.47990 -11.34789 -11.04084 -10.64080 -9.99443 -9.95851 -9.67333 -8.33776 -6.08853 0.09662 0.37671 1.38122 1.40257 1.50598 1.66807 1.94096 2.25017 2.32880 2.42504 2.87824 3.01909 3.60569 3.88364 3.93647 3.97952 4.20847 4.44605 4.49067 4.56852 4.69591 4.94558 5.02357 5.34083 5.37339 5.39011 5.45529 5.48801 5.60187 5.97748 6.06636 6.31898 6.99579 7.09175 7.20189 7.86369 8.64404 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.032575 B = 0.006612 C = 0.006007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.355325 B = 4233.524199 C = 4659.835406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.150 4.150 3 C 0.241 3.759 4 N -0.429 5.429 5 C -0.343 4.343 6 H 0.084 0.916 7 C 0.001 3.999 8 N -0.880 5.880 9 Si 1.004 2.996 10 H -0.261 1.261 11 H -0.274 1.274 12 H -0.276 1.276 13 C 0.584 3.416 14 O -0.626 6.626 15 O -0.320 6.320 16 C 0.076 3.924 17 C -0.148 4.148 18 C -0.107 4.107 19 C -0.116 4.116 20 C -0.101 4.101 21 C -0.138 4.138 22 H 0.236 0.764 23 H 0.110 0.890 24 H 0.082 0.918 25 H 0.275 0.725 26 H 0.104 0.896 27 H 0.155 0.845 28 H 0.169 0.831 29 H 0.167 0.833 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.209 4.666 -10.220 11.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.152 4.152 3 C 0.120 3.880 4 N -0.155 5.155 5 C -0.469 4.469 6 H 0.102 0.898 7 C -0.202 4.202 8 N -0.518 5.518 9 Si 0.826 3.174 10 H -0.186 1.186 11 H -0.199 1.199 12 H -0.201 1.201 13 C 0.340 3.660 14 O -0.521 6.521 15 O -0.233 6.233 16 C 0.033 3.967 17 C -0.167 4.167 18 C -0.124 4.124 19 C -0.134 4.134 20 C -0.119 4.119 21 C -0.156 4.156 22 H 0.252 0.748 23 H 0.128 0.872 24 H 0.100 0.900 25 H 0.086 0.914 26 H 0.122 0.878 27 H 0.172 0.828 28 H 0.186 0.814 29 H 0.185 0.815 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.253 4.440 -10.191 11.119 hybrid contribution -0.200 -0.671 1.038 1.252 sum 0.053 3.769 -9.153 9.899 Atomic orbital electron populations 1.25145 0.96347 1.01395 1.03927 1.23465 0.95075 0.99073 0.97591 1.18334 0.84810 0.84475 1.00420 1.42767 1.58733 1.14479 0.99525 1.19685 1.29184 1.04118 0.93903 0.89839 1.26186 0.94943 1.00004 0.99047 1.70148 1.23917 1.37977 1.19711 0.84789 0.78092 0.77508 0.77011 1.18578 1.19924 1.20059 1.18658 0.82748 0.81378 0.83209 1.90772 1.56260 1.30363 1.74657 1.84239 1.82522 1.40135 1.16416 1.18910 0.96824 1.00862 0.80055 1.21477 0.98844 0.99043 0.97338 1.21365 1.00089 0.99429 0.91553 1.21683 0.93333 0.96534 1.01823 1.21457 0.99881 0.97975 0.92584 1.21461 0.96325 1.01897 0.95927 0.74771 0.87181 0.90032 0.91442 0.87819 0.82758 0.81363 0.81542 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.74 19.25 74.32 1.43 -9.31 16 2 C -0.15 -7.25 11.51 31.12 0.36 -6.90 16 3 C 0.24 11.73 5.07 84.57 0.43 12.16 16 4 N -0.43 -23.62 2.60 -774.59 -2.02 -25.64 16 5 C -0.34 -19.62 9.34 84.01 0.78 -18.83 16 6 H 0.08 5.02 7.37 -2.91 -0.02 5.00 16 7 C 0.00 0.04 5.11 84.90 0.43 0.48 16 8 N -0.88 -46.06 9.01 21.65 0.20 -45.87 16 9 Si 1.00 41.84 29.57 68.60 2.03 43.87 16 10 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 11 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 12 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 13 C 0.58 32.10 8.12 129.79 1.05 33.15 16 14 O -0.63 -37.71 15.65 19.79 0.31 -37.40 16 15 O -0.32 -15.37 8.96 0.18 0.00 -15.37 16 16 C 0.08 3.12 5.11 22.51 0.12 3.23 16 17 C -0.15 -5.58 9.66 22.36 0.22 -5.36 16 18 C -0.11 -2.91 10.04 22.25 0.22 -2.69 16 19 C -0.12 -2.57 10.04 22.29 0.22 -2.35 16 20 C -0.10 -2.44 10.04 22.26 0.22 -2.22 16 21 C -0.14 -4.54 9.99 22.37 0.22 -4.32 16 22 H 0.24 7.80 7.80 -4.43 -0.03 7.77 16 23 H 0.11 5.46 6.33 -2.39 -0.02 5.44 16 24 H 0.08 3.54 7.57 -2.39 -0.02 3.52 16 25 H 0.28 13.53 8.31 -92.71 -0.77 12.76 16 26 H 0.10 4.19 8.06 -2.91 -0.02 4.16 16 27 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 28 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 29 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 30 H 0.13 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -70.95 278.05 7.38 -63.57 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 1.14 Total: 19.78 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: 5.71 Total: -2.95 kcal Atomic # 7 Polarization: -69.69 SS G_CDS: -1.82 Total: -71.51 kcal Atomic # 8 Polarization: -53.07 SS G_CDS: 0.31 Total: -52.76 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -70.95 7.38 -63.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304160813.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.055 kcal (2) G-P(sol) polarization free energy of solvation -70.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds