Wall clock time and date at job start Mon Mar 30 2020 03:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34700 * 117.00133 * 2 1 4 4 O 1.21471 * 119.99887 * 0.02562 * 3 2 1 5 5 C 1.47745 * 120.00172 * 180.02562 * 3 2 1 6 6 C 1.39389 * 120.07665 * 359.97438 * 5 3 2 7 7 C 1.39340 * 119.69143 * 180.02562 * 6 5 3 8 8 C 1.43205 * 120.07101 * 180.02562 * 7 6 5 9 9 N 5.98154 * 160.96659 * 180.02562 * 2 1 3 10 10 C 1.39760 * 119.84972 * 359.97438 * 7 6 5 11 11 C 1.38051 * 120.14707 * 359.97438 * 10 7 6 12 12 C 1.50706 * 119.84092 * 180.02562 * 11 10 7 13 13 C 1.50698 * 109.47294 * 90.00048 * 12 11 10 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99933 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99912 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47123 * 90.00333 * 17 15 13 19 19 H 1.48506 * 109.46940 * 210.00455 * 17 15 13 20 20 H 1.48497 * 109.47329 * 330.00167 * 17 15 13 21 21 C 1.38082 * 120.31324 * 0.28691 * 11 10 7 22 22 H 1.09005 * 109.46790 * 299.99374 * 1 2 3 23 23 H 1.08994 * 109.47243 * 59.99613 * 1 2 3 24 24 H 1.08998 * 109.46962 * 180.02562 * 1 2 3 25 25 H 1.08001 * 120.14923 * 0.02562 * 6 5 3 26 26 H 1.07998 * 119.92649 * 180.02562 * 10 7 6 27 27 H 1.09001 * 109.46953 * 209.99491 * 12 11 10 28 28 H 1.09000 * 109.47318 * 329.99088 * 12 11 10 29 29 H 0.97006 * 119.99727 * 179.97438 * 16 15 13 30 30 H 1.08001 * 119.92922 * 179.72710 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2189 0.0005 5 6 3.5390 1.2775 -0.0006 6 6 4.2997 0.1095 -0.0006 7 6 5.6907 0.1918 -0.0006 8 6 6.4802 -1.0030 -0.0011 9 7 7.1065 -1.9507 -0.0009 10 6 6.3135 1.4429 -0.0011 11 6 5.5538 2.5956 -0.0022 12 6 6.2326 3.9411 -0.0033 13 6 6.4590 4.3884 -1.4245 14 1 6.1432 3.7609 -2.2449 15 6 7.0700 5.5982 -1.6775 16 7 7.2680 5.9883 -2.9177 17 14 7.6167 6.6832 -0.2585 18 1 9.0113 6.3397 0.1184 19 1 7.5521 8.1082 -0.6717 20 1 6.7211 6.4643 0.9056 21 6 4.1750 2.5215 0.0032 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.8132 -0.8547 -0.0006 26 1 7.3915 1.5082 -0.0015 27 1 5.6016 4.6669 0.5097 28 1 7.1908 3.8652 0.5107 29 1 7.6975 6.8396 -3.0957 30 1 3.5867 3.4273 0.0068 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396076561.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:17 Heat of formation + Delta-G solvation = -38.070591 kcal Electronic energy + Delta-G solvation = -16242.755222 eV Core-core repulsion = 13389.184210 eV Total energy + Delta-G solvation = -2853.571011 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.55034 -39.04463 -36.56746 -36.23029 -33.76223 -31.90252 -31.48018 -28.27796 -27.58450 -24.19154 -23.69019 -22.54406 -20.35263 -18.09363 -17.39242 -16.91351 -16.40346 -16.37016 -15.94719 -15.24529 -14.41463 -13.97545 -13.82027 -13.36619 -13.24829 -13.03821 -12.78291 -12.41294 -12.24751 -12.10923 -11.83659 -11.54005 -11.41153 -10.87742 -10.73214 -10.55307 -10.30055 -10.14903 -9.54226 -8.91020 -8.68753 -8.38636 -6.17746 -4.19381 0.72540 1.08730 2.54234 2.60124 2.76034 3.17576 3.22335 3.31487 3.31862 3.91727 4.03945 4.32167 4.71439 4.93861 5.00079 5.07040 5.14242 5.25253 5.30762 5.42797 5.52270 5.71371 6.03625 6.22002 6.24343 6.44817 6.52135 6.77872 6.95307 7.16107 7.52950 7.54932 7.73433 8.34505 8.85752 9.40959 10.94701 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.018761 B = 0.006506 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.120891 B = 4302.856961 C = 5425.619249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.357 6.357 3 C 0.513 3.487 4 O -0.502 6.502 5 C -0.132 4.132 6 C -0.037 4.037 7 C -0.048 4.048 8 C 0.267 3.733 9 N -0.429 5.429 10 C -0.034 4.034 11 C -0.040 4.040 12 C 0.014 3.986 13 C -0.523 4.523 14 H 0.076 0.924 15 C 0.073 3.927 16 N -0.894 5.894 17 Si 0.876 3.124 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.263 1.263 21 C -0.022 4.022 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.100 0.900 25 H 0.140 0.860 26 H 0.139 0.861 27 H 0.036 0.964 28 H 0.031 0.969 29 H 0.266 0.734 30 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.558 -9.852 7.686 15.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.274 6.274 3 C 0.358 3.642 4 O -0.390 6.390 5 C -0.133 4.133 6 C -0.058 4.058 7 C -0.051 4.051 8 C -0.048 4.048 9 N -0.104 5.104 10 C -0.055 4.055 11 C -0.040 4.040 12 C -0.023 4.023 13 C -0.561 4.561 14 H 0.094 0.906 15 C -0.130 4.130 16 N -0.532 5.532 17 Si 0.703 3.297 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.188 1.188 21 C -0.041 4.041 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.119 0.881 25 H 0.158 0.842 26 H 0.157 0.843 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.749 -10.885 7.566 15.883 hybrid contribution -0.115 1.091 0.457 1.189 sum -8.864 -9.794 8.023 15.455 Atomic orbital electron populations 1.23262 0.76134 1.03578 1.02704 1.86538 1.23452 1.32862 1.84571 1.21170 0.89034 0.81357 0.72644 1.90850 1.66625 1.35937 1.45590 1.18858 0.88641 0.94634 1.11165 1.21206 0.91473 0.98339 0.94736 1.15851 0.91279 0.87761 1.10206 1.25618 0.93231 0.92741 0.93221 1.81212 1.08745 1.10878 1.09612 1.21445 1.01116 0.89727 0.93177 1.20204 0.92414 0.97066 0.94337 1.18884 0.95694 0.88494 0.99243 1.20882 1.40250 1.04855 0.90077 0.90553 1.24976 0.95031 0.97416 0.95537 1.69888 1.42635 1.21896 1.18766 0.86829 0.79622 0.80124 0.83104 1.20059 1.21139 1.18764 1.21489 0.94607 0.96504 0.91531 0.91850 0.91745 0.88133 0.84183 0.84284 0.94552 0.95049 0.92397 0.83758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.56 101.05 1.07 1.39 16 2 O -0.36 -4.28 9.81 -40.49 -0.40 -4.68 16 3 C 0.51 7.42 7.90 34.62 0.27 7.69 16 4 O -0.50 -8.47 16.13 -19.24 -0.31 -8.78 16 5 C -0.13 -1.91 5.87 -105.03 -0.62 -2.53 16 6 C -0.04 -0.47 9.32 -38.74 -0.36 -0.83 16 7 C -0.05 -0.66 5.73 -106.99 -0.61 -1.27 16 8 C 0.27 3.83 15.32 -22.47 -0.34 3.48 16 9 N -0.43 -6.84 18.54 41.84 0.78 -6.07 16 10 C -0.03 -0.53 9.39 -39.08 -0.37 -0.89 16 11 C -0.04 -0.70 5.06 -104.74 -0.53 -1.23 16 12 C 0.01 0.29 4.16 -29.03 -0.12 0.17 16 13 C -0.52 -13.58 9.65 -34.44 -0.33 -13.91 16 14 H 0.08 2.17 7.98 -52.48 -0.42 1.75 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 16 N -0.89 -26.13 13.96 55.43 0.77 -25.36 16 17 Si 0.88 20.01 27.47 -169.99 -4.67 15.34 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.26 -5.67 6.54 56.52 0.37 -5.30 16 21 C -0.02 -0.37 9.23 -39.09 -0.36 -0.73 16 22 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.14 1.49 7.61 -52.49 -0.40 1.09 16 26 H 0.14 2.02 8.06 -52.49 -0.42 1.59 16 27 H 0.04 0.75 7.14 -51.93 -0.37 0.38 16 28 H 0.03 0.63 7.51 -51.93 -0.39 0.24 16 29 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.14 2.43 7.64 -52.49 -0.40 2.03 16 LS Contribution 282.97 15.07 4.26 4.26 Total: -1.00 -30.07 282.97 -4.80 -34.87 By element: Atomic # 1 Polarization: 0.02 SS G_CDS: -2.84 Total: -2.81 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -2.40 Total: -6.77 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 1.55 Total: -31.42 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.71 Total: -13.46 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.67 Total: 15.34 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.07 -4.80 -34.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396076561.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.203 kcal (2) G-P(sol) polarization free energy of solvation -30.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds