Wall clock time and date at job start Mon Mar 30 2020 03:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34700 * 117.00133 * 2 1 4 4 O 1.21471 * 119.99887 * 0.02562 * 3 2 1 5 5 C 1.47745 * 120.00172 * 180.02562 * 3 2 1 6 6 C 1.39389 * 120.07665 * 359.97438 * 5 3 2 7 7 C 1.39340 * 119.69143 * 180.02562 * 6 5 3 8 8 C 1.43205 * 120.07101 * 180.02562 * 7 6 5 9 9 N 5.98154 * 160.96659 * 180.02562 * 2 1 3 10 10 C 1.39760 * 119.84972 * 359.97438 * 7 6 5 11 11 C 1.38051 * 120.14707 * 359.97438 * 10 7 6 12 12 C 1.50706 * 119.84092 * 180.02562 * 11 10 7 13 13 C 1.50698 * 109.47294 * 90.00048 * 12 11 10 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99933 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99912 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47123 * 90.00333 * 17 15 13 19 19 H 1.48506 * 109.46940 * 210.00455 * 17 15 13 20 20 H 1.48497 * 109.47329 * 330.00167 * 17 15 13 21 21 C 1.38082 * 120.31324 * 0.28691 * 11 10 7 22 22 H 1.09005 * 109.46790 * 299.99374 * 1 2 3 23 23 H 1.08994 * 109.47243 * 59.99613 * 1 2 3 24 24 H 1.08998 * 109.46962 * 180.02562 * 1 2 3 25 25 H 1.08001 * 120.14923 * 0.02562 * 6 5 3 26 26 H 1.07998 * 119.92649 * 180.02562 * 10 7 6 27 27 H 1.09001 * 109.46953 * 209.99491 * 12 11 10 28 28 H 1.09000 * 109.47318 * 329.99088 * 12 11 10 29 29 H 0.97006 * 119.99727 * 179.97438 * 16 15 13 30 30 H 1.08001 * 119.92922 * 179.72710 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2189 0.0005 5 6 3.5390 1.2775 -0.0006 6 6 4.2997 0.1095 -0.0006 7 6 5.6907 0.1918 -0.0006 8 6 6.4802 -1.0030 -0.0011 9 7 7.1065 -1.9507 -0.0009 10 6 6.3135 1.4429 -0.0011 11 6 5.5538 2.5956 -0.0022 12 6 6.2326 3.9411 -0.0033 13 6 6.4590 4.3884 -1.4245 14 1 6.1432 3.7609 -2.2449 15 6 7.0700 5.5982 -1.6775 16 7 7.2680 5.9883 -2.9177 17 14 7.6167 6.6832 -0.2585 18 1 9.0113 6.3397 0.1184 19 1 7.5521 8.1082 -0.6717 20 1 6.7211 6.4643 0.9056 21 6 4.1750 2.5215 0.0032 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.8132 -0.8547 -0.0006 26 1 7.3915 1.5082 -0.0015 27 1 5.6016 4.6669 0.5097 28 1 7.1908 3.8652 0.5107 29 1 7.6975 6.8396 -3.0957 30 1 3.5867 3.4273 0.0068 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396076561.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:17 Heat of formation + Delta-G solvation = -55.047052 kcal Electronic energy + Delta-G solvation = -16243.491376 eV Core-core repulsion = 13389.184210 eV Total energy + Delta-G solvation = -2854.307166 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.66697 -40.23540 -37.71065 -37.38833 -35.46292 -33.60673 -32.69658 -29.77123 -28.56660 -25.34816 -25.15517 -24.01298 -21.56726 -19.35562 -18.93032 -18.48761 -17.54439 -17.37279 -17.08365 -16.47889 -16.28507 -15.19285 -15.02214 -14.65222 -14.35905 -14.31473 -14.06737 -14.03008 -13.50023 -13.41273 -13.03124 -12.94900 -12.70559 -12.35519 -12.06624 -11.83144 -11.78613 -11.63943 -11.50792 -10.73868 -10.11685 -9.72911 -8.24890 -6.30496 -0.48656 -0.07719 1.34303 1.43013 1.45585 1.52774 1.55651 1.67745 2.00111 2.40328 2.72050 2.83942 3.11054 3.65099 3.80472 4.06796 4.13083 4.27578 4.36814 4.39808 4.43574 4.75223 4.83214 5.00893 5.08860 5.11962 5.16084 5.29034 5.55674 5.67605 5.68985 6.28215 6.38854 6.65459 6.77230 7.33565 8.91244 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.018761 B = 0.006506 C = 0.005159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.120891 B = 4302.856961 C = 5425.619249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.518 3.482 4 O -0.532 6.532 5 C -0.134 4.134 6 C -0.010 4.010 7 C -0.040 4.040 8 C 0.287 3.713 9 N -0.452 5.452 10 C -0.029 4.029 11 C -0.063 4.063 12 C 0.017 3.983 13 C -0.522 4.522 14 H 0.035 0.965 15 C 0.009 3.991 16 N -0.949 5.949 17 Si 0.945 3.055 18 H -0.264 1.264 19 H -0.291 1.291 20 H -0.239 1.239 21 C -0.027 4.027 22 H 0.065 0.935 23 H 0.061 0.939 24 H 0.137 0.863 25 H 0.172 0.828 26 H 0.147 0.853 27 H 0.040 0.960 28 H 0.046 0.954 29 H 0.266 0.734 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.142 -11.357 9.528 17.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.364 3.636 4 O -0.423 6.423 5 C -0.135 4.135 6 C -0.030 4.030 7 C -0.043 4.043 8 C -0.028 4.028 9 N -0.127 5.127 10 C -0.049 4.049 11 C -0.064 4.064 12 C -0.021 4.021 13 C -0.560 4.560 14 H 0.053 0.947 15 C -0.188 4.188 16 N -0.590 5.590 17 Si 0.768 3.232 18 H -0.189 1.189 19 H -0.217 1.217 20 H -0.162 1.162 21 C -0.046 4.046 22 H 0.084 0.916 23 H 0.080 0.920 24 H 0.155 0.845 25 H 0.189 0.811 26 H 0.164 0.836 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.346 -12.433 9.429 18.189 hybrid contribution -0.049 1.415 -0.175 1.426 sum -9.396 -11.018 9.254 17.185 Atomic orbital electron populations 1.23628 0.74060 1.06032 1.02739 1.86519 1.25393 1.31116 1.83823 1.21101 0.88873 0.81691 0.71943 1.90842 1.67204 1.37125 1.47153 1.18839 0.89141 0.94347 1.11207 1.21467 0.90868 0.99002 0.91670 1.15712 0.91554 0.86899 1.10147 1.25440 0.92620 0.92271 0.92438 1.81251 1.09344 1.11693 1.10459 1.21474 1.01466 0.89702 0.92282 1.19878 0.92868 0.96222 0.97383 1.18747 0.96868 0.90536 0.95912 1.21194 1.38823 1.04089 0.91882 0.94709 1.25938 0.95406 0.99240 0.98206 1.70058 1.44737 1.22705 1.21474 0.85738 0.79929 0.77381 0.80155 1.18935 1.21681 1.16219 1.21405 0.94247 0.97179 0.91812 0.91615 0.92033 0.84463 0.81092 0.83562 0.94140 0.93551 0.92506 0.84949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.61 16 2 O -0.35 -7.46 9.81 -56.10 -0.55 -8.01 16 3 C 0.52 14.15 7.90 70.34 0.56 14.70 16 4 O -0.53 -17.66 16.13 19.93 0.32 -17.34 16 5 C -0.13 -3.66 5.87 -20.13 -0.12 -3.78 16 6 C -0.01 -0.22 9.32 22.81 0.21 -0.01 16 7 C -0.04 -0.99 5.73 -21.40 -0.12 -1.12 16 8 C 0.29 7.49 15.32 88.33 1.35 8.84 16 9 N -0.45 -13.40 18.54 19.01 0.35 -13.05 16 10 C -0.03 -0.84 9.39 22.59 0.21 -0.63 16 11 C -0.06 -2.18 5.06 -19.94 -0.10 -2.28 16 12 C 0.02 0.68 4.16 29.10 0.12 0.80 16 13 C -0.52 -27.71 9.65 25.60 0.25 -27.47 16 14 H 0.03 2.07 7.98 -2.91 -0.02 2.05 16 15 C 0.01 0.51 5.47 84.65 0.46 0.98 16 16 N -0.95 -57.39 13.96 21.45 0.30 -57.09 16 17 Si 0.94 41.10 27.47 68.60 1.88 42.98 16 18 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 19 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.24 -9.38 6.54 99.48 0.65 -8.73 16 21 C -0.03 -0.89 9.23 22.59 0.21 -0.68 16 22 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 23 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.14 1.00 8.14 -2.39 -0.02 0.99 16 25 H 0.17 2.88 7.61 -2.91 -0.02 2.85 16 26 H 0.15 4.02 8.06 -2.91 -0.02 3.99 16 27 H 0.04 1.63 7.14 -2.39 -0.02 1.61 16 28 H 0.05 1.77 7.51 -2.39 -0.02 1.75 16 29 H 0.27 15.08 8.31 -92.70 -0.77 14.31 16 30 H 0.13 4.55 7.64 -2.91 -0.02 4.53 16 Total: -1.00 -66.32 282.97 7.65 -58.68 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: 1.11 Total: 2.85 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 4.23 Total: -9.02 kcal Atomic # 7 Polarization: -70.79 SS G_CDS: 0.65 Total: -70.14 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.23 Total: -25.35 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 1.88 Total: 42.98 kcal Total: -66.32 7.65 -58.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396076561.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.630 kcal (2) G-P(sol) polarization free energy of solvation -66.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds