Wall clock time and date at job start Mon Mar 30 2020 03:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42896 * 109.47138 * 2 1 4 4 C 1.35648 * 117.00071 * 180.02562 * 3 2 1 5 5 C 1.38078 * 119.96089 * 359.97438 * 4 3 2 6 6 C 1.40693 * 120.14919 * 179.97438 * 5 4 3 7 7 C 1.41076 * 119.96436 * 179.97438 * 6 5 4 8 8 H 1.08003 * 120.00424 * 334.50763 * 7 6 5 9 9 C 1.40308 * 120.00042 * 154.50774 * 7 6 5 10 10 N 1.30591 * 120.00198 * 342.45160 * 9 7 6 11 11 Si 1.86805 * 120.00378 * 162.45097 * 9 7 6 12 12 H 1.48509 * 109.46804 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47181 * 120.00013 * 11 9 7 14 14 H 1.48498 * 109.47338 * 240.00410 * 11 9 7 15 15 C 1.40914 * 120.06933 * 359.75080 * 6 5 4 16 16 C 1.38412 * 119.92142 * 0.52437 * 15 6 5 17 17 C 1.43202 * 120.07158 * 179.75016 * 16 15 6 18 18 N 7.17547 * 131.42494 * 359.97438 * 2 1 3 19 19 C 1.40581 * 119.95959 * 179.97438 * 4 3 2 20 20 C 1.46411 * 120.03567 * 359.97438 * 19 4 3 21 21 O 1.21354 * 120.00336 * 0.02562 * 20 19 4 22 22 H 1.08998 * 109.46847 * 300.00023 * 1 2 3 23 23 H 1.08992 * 109.47326 * 60.00167 * 1 2 3 24 24 H 1.09003 * 109.46781 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46847 * 239.99977 * 2 1 3 26 26 H 1.09003 * 109.46885 * 119.99862 * 2 1 3 27 27 H 1.08003 * 119.92473 * 359.97438 * 5 4 3 28 28 H 0.97000 * 120.00319 * 180.02562 * 10 9 7 29 29 H 1.07998 * 120.03644 * 180.25461 * 15 6 5 30 30 H 1.07998 * 119.99957 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3511 1.5250 -0.0005 5 6 4.1915 0.4294 -0.0005 6 6 5.5869 0.6092 -0.0016 7 6 6.4419 -0.5130 -0.0011 8 1 6.0980 -1.4538 0.4027 9 6 7.7392 -0.4068 -0.5250 10 7 8.0470 0.5909 -1.3094 11 14 9.0262 -1.6925 -0.1005 12 1 8.4292 -2.7123 0.7990 13 1 9.5004 -2.3482 -1.3457 14 1 10.1718 -1.0395 0.5823 15 6 6.1314 1.9089 -0.0081 16 6 5.2917 3.0092 -0.0023 17 6 5.8415 4.3314 -0.0034 18 7 6.2776 5.3803 -0.0024 19 6 3.8875 2.8244 -0.0011 20 6 2.9956 3.9855 -0.0017 21 8 1.7925 3.8264 -0.0012 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.7767 -0.5678 0.0003 28 1 8.9437 0.6641 -1.6719 29 1 7.2026 2.0462 -0.0131 30 1 3.4083 4.9835 -0.0026 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575642960.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:24 Heat of formation + Delta-G solvation = -38.411760 kcal Electronic energy + Delta-G solvation = -16782.878192 eV Core-core repulsion = 13929.292387 eV Total energy + Delta-G solvation = -2853.585806 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.39976 -37.49393 -36.97072 -35.68941 -33.92584 -31.37055 -30.78668 -28.69201 -26.59356 -23.67313 -23.05358 -21.61235 -20.13872 -18.80936 -16.70794 -15.98925 -15.81289 -15.49947 -15.46810 -14.93362 -13.90388 -13.53427 -13.47239 -12.97002 -12.76006 -12.61519 -12.43429 -12.35539 -12.18836 -11.98236 -11.66769 -11.47701 -11.12759 -10.87270 -10.73234 -10.51335 -10.19034 -10.03270 -9.51021 -8.63939 -8.01238 -7.38045 -7.27512 -4.93932 1.51391 2.37592 2.73390 2.81963 2.87409 3.28846 3.46174 3.55085 3.74935 3.90746 4.35494 4.80199 5.20042 5.26588 5.33011 5.41927 5.64300 5.84979 6.11145 6.13546 6.24107 6.31586 6.44987 6.54009 6.60047 6.75367 7.10382 7.28701 7.39812 7.61586 7.89132 8.07571 8.17391 8.28572 8.46588 8.54033 9.57253 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.019066 B = 0.008283 C = 0.005888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.228198 B = 3379.698813 C = 4754.389356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.295 6.295 4 C 0.222 3.778 5 C -0.319 4.319 6 C 0.147 3.853 7 C -0.420 4.420 8 H 0.094 0.906 9 C 0.071 3.929 10 N -0.758 5.758 11 Si 0.918 3.082 12 H -0.254 1.254 13 H -0.269 1.269 14 H -0.266 1.266 15 C -0.124 4.124 16 C 0.041 3.959 17 C 0.279 3.721 18 N -0.457 5.457 19 C -0.318 4.318 20 C 0.379 3.621 21 O -0.489 6.489 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.112 0.888 28 H 0.294 0.706 29 H 0.132 0.868 30 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.518 -5.164 1.407 5.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.023 4.023 3 O -0.207 6.207 4 C 0.175 3.825 5 C -0.340 4.340 6 C 0.143 3.857 7 C -0.447 4.447 8 H 0.112 0.888 9 C -0.153 4.153 10 N -0.380 5.380 11 Si 0.741 3.259 12 H -0.178 1.178 13 H -0.193 1.193 14 H -0.190 1.190 15 C -0.147 4.147 16 C 0.036 3.964 17 C -0.035 4.035 18 N -0.133 5.133 19 C -0.323 4.323 20 C 0.244 3.756 21 O -0.368 6.368 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.130 0.870 28 H 0.105 0.895 29 H 0.150 0.850 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.450 -3.367 1.249 4.347 hybrid contribution 0.857 -1.188 -0.009 1.465 sum -1.593 -4.555 1.241 4.983 Atomic orbital electron populations 1.21721 0.93697 1.01773 1.03271 1.22665 0.95012 0.83423 1.01174 1.86187 1.19695 1.27316 1.87534 1.18637 0.81269 0.92737 0.89859 1.21050 0.93784 0.96174 1.23019 1.17349 0.90835 0.92266 0.85210 1.19990 0.95861 0.97832 1.30979 0.88816 1.26235 0.99782 0.96894 0.92399 1.69674 1.22280 1.27554 1.18444 0.86059 0.79559 0.80463 0.79809 1.17759 1.19347 1.19038 1.21424 0.99280 0.90477 1.03489 1.15610 0.91594 0.85145 1.04004 1.26023 0.92194 0.92779 0.92501 1.81102 1.09715 1.11895 1.10607 1.18989 0.91558 0.92330 1.29393 1.23131 0.88481 0.92153 0.71829 1.90462 1.17843 1.89522 1.38966 0.91872 0.91845 0.91176 0.92389 0.92471 0.87005 0.89461 0.85011 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 10.28 37.16 0.38 -1.53 16 2 C 0.05 0.85 5.45 37.16 0.20 1.05 16 3 O -0.29 -6.13 8.16 -40.75 -0.33 -6.46 16 4 C 0.22 4.85 6.69 -38.76 -0.26 4.59 16 5 C -0.32 -6.83 8.75 -38.71 -0.34 -7.17 16 6 C 0.15 3.32 5.57 -106.88 -0.59 2.73 16 7 C -0.42 -9.14 9.04 -37.73 -0.34 -9.48 16 8 H 0.09 1.92 7.91 -52.48 -0.42 1.50 16 9 C 0.07 1.46 5.13 -17.30 -0.09 1.37 16 10 N -0.76 -16.39 10.96 55.57 0.61 -15.78 16 11 Si 0.92 15.42 29.60 -169.99 -5.03 10.39 16 12 H -0.25 -4.22 7.11 56.52 0.40 -3.82 16 13 H -0.27 -4.49 7.11 56.52 0.40 -4.09 16 14 H -0.27 -4.46 7.11 56.52 0.40 -4.05 16 15 C -0.12 -2.78 8.35 -38.51 -0.32 -3.10 16 16 C 0.04 0.87 5.75 -106.62 -0.61 0.26 16 17 C 0.28 5.76 13.90 -22.47 -0.31 5.44 16 18 N -0.46 -9.56 18.54 41.83 0.78 -8.78 16 19 C -0.32 -6.96 5.92 -104.43 -0.62 -7.58 16 20 C 0.38 8.04 10.98 34.02 0.37 8.41 16 21 O -0.49 -11.47 15.94 -16.61 -0.26 -11.73 16 22 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.89 7.65 -51.93 -0.40 0.49 16 26 H 0.06 0.86 7.65 -51.93 -0.40 0.46 16 27 H 0.11 2.18 6.25 -52.48 -0.33 1.85 16 28 H 0.29 5.70 8.29 -40.82 -0.34 5.37 16 29 H 0.13 2.99 6.17 -52.49 -0.32 2.67 16 30 H 0.07 1.23 7.18 -52.49 -0.38 0.85 16 LS Contribution 275.85 15.07 4.16 4.16 Total: -1.00 -25.63 275.85 -5.26 -30.89 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -2.64 Total: 2.33 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -2.53 Total: -5.01 kcal Atomic # 7 Polarization: -25.95 SS G_CDS: 1.38 Total: -24.56 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.60 Total: -18.19 kcal Atomic # 14 Polarization: 15.42 SS G_CDS: -5.03 Total: 10.39 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -25.63 -5.26 -30.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575642960.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.522 kcal (2) G-P(sol) polarization free energy of solvation -25.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds