Wall clock time and date at job start Mon Mar 30 2020 03:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42896 * 109.47479 * 2 1 4 4 C 1.35580 * 116.99742 * 180.02562 * 3 2 1 5 5 C 1.37985 * 119.55326 * 359.97438 * 4 3 2 6 6 C 1.40608 * 119.97910 * 180.02562 * 5 4 3 7 7 C 1.40576 * 120.42919 * 180.02562 * 6 5 4 8 8 H 1.07996 * 120.00540 * 145.26960 * 7 6 5 9 9 C 1.40471 * 119.99641 * 325.54574 * 7 6 5 10 10 N 1.30521 * 120.00043 * 353.21736 * 9 7 6 11 11 Si 1.86793 * 120.00123 * 173.21924 * 9 7 6 12 12 H 1.48505 * 109.47247 * 89.99519 * 11 9 7 13 13 H 1.48500 * 109.47463 * 209.99754 * 11 9 7 14 14 H 1.48508 * 109.46953 * 329.99973 * 11 9 7 15 15 C 1.46860 * 119.14610 * 0.27381 * 6 5 4 16 16 C 1.46487 * 120.43358 * 179.70072 * 15 6 5 17 17 O 1.21354 * 120.00139 * 354.48825 * 16 15 6 18 18 C 1.39232 * 119.12915 * 359.44457 * 15 6 5 19 19 C 1.39486 * 119.96046 * 0.56066 * 18 15 6 20 20 C 1.43201 * 119.55469 * 179.72839 * 19 18 15 21 21 N 4.89886 * 98.83349 * 359.97438 * 2 1 3 22 22 H 1.09008 * 109.47160 * 59.99499 * 1 2 3 23 23 H 1.08993 * 109.47527 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46860 * 300.00421 * 1 2 3 25 25 H 1.09008 * 109.46720 * 239.99808 * 2 1 3 26 26 H 1.09001 * 109.47322 * 120.00827 * 2 1 3 27 27 H 1.07999 * 120.00934 * 0.04671 * 5 4 3 28 28 H 0.96992 * 119.99916 * 180.02562 * 10 9 7 29 29 H 1.08004 * 120.00046 * 174.47777 * 16 15 6 30 30 H 1.08002 * 120.01988 * 180.28768 * 18 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3505 1.5247 -0.0005 5 6 4.1824 0.4238 -0.0005 6 6 5.5777 0.5975 -0.0005 7 6 6.4340 -0.5173 -0.0011 8 1 7.3725 -0.4773 -0.5339 9 6 6.0662 -1.6856 0.6867 10 7 4.9962 -1.6935 1.4341 11 14 7.1085 -3.2279 0.5318 12 1 8.1500 -3.2300 1.5905 13 1 6.2451 -4.4264 0.6845 14 1 7.7594 -3.2535 -0.8028 15 6 6.1290 1.9587 0.0056 16 6 7.5782 2.1723 0.0123 17 8 8.3306 1.2256 0.1138 18 6 5.2562 3.0435 -0.0006 19 6 3.8780 2.8287 -0.0006 20 6 2.9882 3.9507 -0.0010 21 7 2.2822 4.8407 -0.0022 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5140 0.8899 27 1 3.7619 -0.5709 -0.0008 28 1 4.7425 -2.5001 1.9093 29 1 7.9771 3.1723 -0.0733 30 1 5.6461 4.0507 -0.0009 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575643528.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:05 Heat of formation + Delta-G solvation = -37.418145 kcal Electronic energy + Delta-G solvation = -16900.875885 eV Core-core repulsion = 14047.333166 eV Total energy + Delta-G solvation = -2853.542719 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.24063 -37.86332 -36.23838 -35.35458 -33.96005 -31.43298 -30.23272 -29.06379 -26.51288 -23.69011 -22.50619 -21.78208 -20.03416 -18.18123 -17.44580 -16.56837 -15.51913 -15.29100 -15.25661 -14.50965 -13.72434 -13.40674 -13.31144 -13.05169 -12.83420 -12.62444 -12.32552 -12.26416 -11.90177 -11.81980 -11.55674 -11.26491 -11.12358 -10.94216 -10.68103 -10.59201 -9.95475 -9.92532 -9.52566 -8.48075 -7.76987 -7.35641 -7.13068 -4.87596 1.96479 2.10528 2.87725 2.90633 2.95397 3.56382 3.66068 3.67039 3.86253 3.99154 4.47873 5.08349 5.22665 5.33164 5.37482 5.41310 5.64840 5.77269 5.92314 6.14233 6.20834 6.42165 6.53206 6.60123 6.68204 6.76836 7.04604 7.31285 7.58274 7.62126 8.00571 8.23847 8.36152 8.44438 8.59131 8.72085 9.68441 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.018567 B = 0.009471 C = 0.006410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.656261 B = 2955.702169 C = 4366.914018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 O -0.325 6.325 4 C 0.197 3.803 5 C -0.255 4.255 6 C 0.173 3.827 7 C -0.384 4.384 8 H 0.110 0.890 9 C 0.066 3.934 10 N -0.764 5.764 11 Si 0.925 3.075 12 H -0.263 1.263 13 H -0.274 1.274 14 H -0.255 1.255 15 C -0.323 4.323 16 C 0.378 3.622 17 O -0.483 6.483 18 C 0.045 3.955 19 C -0.203 4.203 20 C 0.295 3.705 21 N -0.499 5.499 22 H 0.060 0.940 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.135 0.865 28 H 0.290 0.710 29 H 0.069 0.931 30 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.442 -2.645 -1.507 3.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.017 4.017 3 O -0.239 6.239 4 C 0.149 3.851 5 C -0.275 4.275 6 C 0.167 3.833 7 C -0.410 4.410 8 H 0.128 0.872 9 C -0.156 4.156 10 N -0.387 5.387 11 Si 0.748 3.252 12 H -0.188 1.188 13 H -0.198 1.198 14 H -0.178 1.178 15 C -0.326 4.326 16 C 0.243 3.757 17 O -0.361 6.361 18 C 0.024 3.976 19 C -0.210 4.210 20 C -0.016 4.016 21 N -0.178 5.178 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.153 0.847 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.453 -1.779 -1.292 3.294 hybrid contribution 0.508 -1.154 0.158 1.270 sum -1.945 -2.933 -1.134 3.697 Atomic orbital electron populations 1.21764 0.93931 1.02094 1.02887 1.22656 0.94450 0.82554 1.02075 1.85884 1.20703 1.28952 1.88342 1.18742 0.81100 0.92632 0.92609 1.21282 0.93704 0.96547 1.15937 1.18426 0.91102 0.90490 0.83238 1.20324 1.04455 0.94195 1.22035 0.87248 1.26352 0.95055 1.00908 0.93319 1.69652 1.20844 1.30203 1.17958 0.86002 0.80010 0.78376 0.80817 1.18750 1.19849 1.17826 1.21374 0.94664 0.93225 1.23300 1.23171 0.88119 0.92237 0.72220 1.90447 1.61334 1.46321 1.37954 1.20653 0.90054 0.97376 0.89511 1.14602 0.90093 0.85096 1.31176 1.25744 0.92357 0.92317 0.91185 1.81049 1.09752 1.11883 1.15110 0.92098 0.90917 0.91981 0.92327 0.91345 0.84728 0.89833 0.91522 0.86647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 10.28 37.16 0.38 -1.59 16 2 C 0.06 0.96 5.44 37.16 0.20 1.17 16 3 O -0.33 -6.62 9.49 -18.43 -0.17 -6.80 16 4 C 0.20 4.27 6.68 -38.76 -0.26 4.01 16 5 C -0.25 -5.73 7.58 -38.78 -0.29 -6.03 16 6 C 0.17 4.05 5.66 -104.63 -0.59 3.46 16 7 C -0.38 -9.14 7.74 -37.86 -0.29 -9.43 16 8 H 0.11 2.66 6.08 -52.49 -0.32 2.34 16 9 C 0.07 1.47 5.30 -17.27 -0.09 1.38 16 10 N -0.76 -17.01 11.04 55.57 0.61 -16.40 16 11 Si 0.92 16.98 29.57 -169.99 -5.03 11.95 16 12 H -0.26 -4.92 7.11 56.52 0.40 -4.51 16 13 H -0.27 -4.79 7.11 56.52 0.40 -4.38 16 14 H -0.25 -4.68 7.11 56.52 0.40 -4.28 16 15 C -0.32 -6.82 6.05 -102.72 -0.62 -7.44 16 16 C 0.38 7.37 11.41 34.05 0.39 7.76 16 17 O -0.48 -11.00 14.61 5.49 0.08 -10.92 16 18 C 0.05 0.87 9.46 -38.75 -0.37 0.50 16 19 C -0.20 -4.26 5.76 -106.59 -0.61 -4.88 16 20 C 0.29 6.26 14.76 -22.47 -0.33 5.93 16 21 N -0.50 -11.00 18.54 41.84 0.78 -10.22 16 22 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.94 7.63 -51.92 -0.40 0.55 16 26 H 0.07 1.18 7.63 -51.93 -0.40 0.78 16 27 H 0.14 3.01 4.67 -52.49 -0.24 2.76 16 28 H 0.29 5.80 8.29 -40.82 -0.34 5.46 16 29 H 0.07 1.02 8.06 -52.48 -0.42 0.59 16 30 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 275.50 15.07 4.15 4.15 Total: -1.00 -26.91 275.50 -4.67 -31.58 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -2.60 Total: 1.80 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -2.49 Total: -5.15 kcal Atomic # 7 Polarization: -28.01 SS G_CDS: 1.39 Total: -26.62 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.09 Total: -17.72 kcal Atomic # 14 Polarization: 16.98 SS G_CDS: -5.03 Total: 11.95 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -26.91 -4.67 -31.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575643528.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.839 kcal (2) G-P(sol) polarization free energy of solvation -26.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds