Wall clock time and date at job start Mon Mar 30 2020 03:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42908 * 109.46987 * 2 1 4 4 C 1.35588 * 116.99936 * 180.02562 * 3 2 1 5 5 C 1.37969 * 120.07159 * 0.24657 * 4 3 2 6 6 C 1.39813 * 120.98685 * 180.26611 * 5 4 3 7 7 C 1.43201 * 119.45906 * 179.76105 * 6 5 4 8 8 N 5.75749 * 165.07771 * 180.02562 * 2 1 3 9 9 C 1.39726 * 121.07513 * 359.74142 * 6 5 4 10 10 C 1.39107 * 120.05402 * 359.97438 * 9 6 5 11 11 C 1.46603 * 120.47640 * 180.02562 * 10 9 6 12 12 O 1.21341 * 120.00621 * 174.43740 * 11 10 9 13 13 C 1.41603 * 120.06894 * 179.97438 * 4 3 2 14 14 C 1.40079 * 120.50811 * 0.02562 * 13 4 3 15 15 H 1.08006 * 119.99713 * 140.89848 * 14 13 4 16 16 C 1.40604 * 120.00127 * 320.89302 * 14 13 4 17 17 N 1.30472 * 119.99976 * 335.12087 * 16 14 13 18 18 Si 1.86801 * 119.99688 * 154.84197 * 16 14 13 19 19 H 1.48505 * 109.46638 * 180.27608 * 18 16 14 20 20 H 1.48492 * 109.47369 * 300.27616 * 18 16 14 21 21 H 1.48499 * 109.47177 * 60.27975 * 18 16 14 22 22 H 1.08997 * 109.47890 * 300.00337 * 1 2 3 23 23 H 1.09000 * 109.47517 * 60.00503 * 1 2 3 24 24 H 1.09010 * 109.47100 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47890 * 239.99663 * 2 1 3 26 26 H 1.09008 * 109.47417 * 119.99179 * 2 1 3 27 27 H 1.07995 * 119.50832 * 0.02562 * 5 4 3 28 28 H 1.08001 * 119.97286 * 180.02562 * 9 6 5 29 29 H 1.08003 * 120.00307 * 354.43144 * 11 10 9 30 30 H 0.96995 * 120.00000 * 352.85948 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3504 1.5250 -0.0005 5 6 4.1923 0.4319 -0.0062 6 6 5.5811 0.5930 -0.0013 7 6 6.4243 -0.5645 -0.0022 8 7 7.0932 -1.4826 -0.0007 9 6 6.1597 1.8648 0.0041 10 6 5.3522 2.9975 0.0041 11 6 5.9494 4.3364 0.0091 12 8 5.2418 5.3168 -0.0927 13 6 3.8932 2.8329 -0.0011 14 6 3.0511 3.9523 -0.0006 15 1 3.3071 4.8203 0.5890 16 6 1.8728 3.9460 -0.7677 17 7 1.7810 3.1748 -1.8161 18 14 0.4360 5.0362 -0.2814 19 1 -0.6803 4.8411 -1.2412 20 1 -0.0181 4.6760 1.0857 21 1 0.8640 6.4580 -0.3024 22 1 -0.3635 0.5138 0.8899 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3634 -1.0278 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 3.7722 -0.5629 -0.0106 28 1 7.2347 1.9685 0.0074 29 1 7.0192 4.4502 0.1037 30 1 2.5581 2.6845 -2.1270 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575643627.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:56 Heat of formation + Delta-G solvation = -49.301699 kcal Electronic energy + Delta-G solvation = -17193.671584 eV Core-core repulsion = 14339.613555 eV Total energy + Delta-G solvation = -2854.058029 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.79369 -39.34593 -38.11349 -36.86679 -35.81535 -32.59280 -31.86973 -30.62672 -27.76767 -25.39376 -23.89328 -23.57604 -21.62434 -20.00780 -19.43474 -17.41522 -17.20605 -16.83981 -16.58972 -15.76793 -15.60977 -15.43442 -14.99069 -14.57306 -14.35804 -14.33580 -13.93774 -13.70938 -13.41380 -13.15432 -13.03893 -12.85789 -12.40764 -12.25591 -12.09407 -11.93695 -11.55419 -11.38672 -10.86272 -10.18168 -9.65347 -9.31537 -8.96486 -6.50820 0.13520 0.46051 1.52064 1.54280 1.80284 1.86554 1.88191 2.28728 2.32135 2.62939 2.79328 3.32404 3.42738 3.87416 4.11977 4.22426 4.26677 4.35964 4.43575 4.64216 4.85970 4.96181 5.00186 5.10140 5.26944 5.32216 5.44362 5.60030 5.71637 5.87783 6.07500 6.37535 6.57360 6.75132 7.02183 7.13306 7.86432 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.018476 B = 0.010756 C = 0.007087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.147364 B = 2602.544212 C = 3950.199260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.047 3.953 3 O -0.311 6.311 4 C 0.029 3.971 5 C -0.129 4.129 6 C -0.175 4.175 7 C 0.300 3.700 8 N -0.512 5.512 9 C 0.025 3.975 10 C -0.322 4.322 11 C 0.377 3.623 12 O -0.522 6.522 13 C 0.079 3.921 14 C -0.430 4.430 15 H 0.091 0.909 16 C 0.012 3.988 17 N -0.737 5.737 18 Si 1.106 2.894 19 H -0.264 1.264 20 H -0.261 1.261 21 H -0.265 1.265 22 H 0.061 0.939 23 H 0.054 0.946 24 H 0.100 0.900 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.120 0.880 28 H 0.146 0.854 29 H 0.128 0.872 30 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.721 -1.065 2.319 3.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 O -0.226 6.226 4 C -0.016 4.016 5 C -0.151 4.151 6 C -0.181 4.181 7 C -0.010 4.010 8 N -0.191 5.191 9 C 0.004 3.996 10 C -0.325 4.325 11 C 0.244 3.756 12 O -0.402 6.402 13 C 0.073 3.927 14 C -0.454 4.454 15 H 0.109 0.891 16 C -0.213 4.213 17 N -0.356 5.356 18 Si 0.923 3.077 19 H -0.188 1.188 20 H -0.185 1.185 21 H -0.190 1.190 22 H 0.080 0.920 23 H 0.073 0.927 24 H 0.118 0.882 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.138 0.862 28 H 0.164 0.836 29 H 0.144 0.856 30 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.754 -1.527 1.817 4.441 hybrid contribution 1.619 -0.685 0.260 1.777 sum -2.135 -2.213 2.077 3.710 Atomic orbital electron populations 1.21712 0.91735 1.03568 1.02760 1.22828 0.96881 0.82578 1.00522 1.86128 1.18629 1.28586 1.89238 1.19097 0.82532 0.93362 1.06587 1.20646 0.92408 0.97068 1.04931 1.14980 0.89856 0.87351 1.25917 1.25906 0.91976 0.92322 0.90793 1.81122 1.10882 1.11539 1.15574 1.21053 0.99271 0.89308 0.89936 1.21337 0.91795 0.95770 1.23629 1.23832 0.94832 0.86077 0.70829 1.90456 1.67434 1.42562 1.39746 1.18565 0.92017 0.90280 0.91796 1.21173 1.03129 1.01366 1.19743 0.89135 1.28385 1.02864 0.97518 0.92511 1.70313 1.33962 1.13918 1.17359 0.83128 0.72236 0.74535 0.77811 1.18807 1.18522 1.18971 0.92001 0.92704 0.88154 0.93153 0.92310 0.86224 0.83603 0.85603 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 10.28 71.98 0.74 -3.07 16 2 C 0.05 1.55 5.45 71.98 0.39 1.95 16 3 O -0.31 -13.27 7.25 -88.97 -0.65 -13.92 16 4 C 0.03 1.30 5.74 23.04 0.13 1.43 16 5 C -0.13 -5.10 8.67 22.59 0.20 -4.91 16 6 C -0.18 -6.64 5.74 -21.29 -0.12 -6.76 16 7 C 0.30 11.23 15.27 88.33 1.35 12.58 16 8 N -0.51 -20.15 18.54 19.00 0.35 -19.80 16 9 C 0.03 0.91 9.46 22.84 0.22 1.12 16 10 C -0.32 -13.29 6.05 -18.64 -0.11 -13.41 16 11 C 0.38 14.34 11.42 70.00 0.80 15.14 16 12 O -0.52 -24.21 14.71 -3.22 -0.05 -24.25 16 13 C 0.08 3.71 5.11 -19.76 -0.10 3.61 16 14 C -0.43 -21.20 7.39 23.29 0.17 -21.03 16 15 H 0.09 4.66 6.42 -2.91 -0.02 4.64 16 16 C 0.01 0.54 4.24 85.47 0.36 0.90 16 17 N -0.74 -35.52 12.05 21.94 0.26 -35.25 16 18 Si 1.11 40.61 30.01 68.60 2.06 42.67 16 19 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 20 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 21 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 22 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 25 H 0.05 1.61 7.63 -2.39 -0.02 1.59 16 26 H 0.06 1.77 7.66 -2.38 -0.02 1.75 16 27 H 0.12 4.28 6.22 -2.91 -0.02 4.26 16 28 H 0.15 4.06 8.06 -2.91 -0.02 4.03 16 29 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 30 H 0.28 14.38 7.29 -92.71 -0.68 13.70 16 Total: -1.00 -57.36 274.46 7.27 -50.09 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 1.27 Total: 12.90 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: 4.02 Total: -12.44 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.62 Total: -55.05 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -0.69 Total: -38.17 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.06 Total: 42.67 kcal Total: -57.36 7.27 -50.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575643627.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.790 kcal (2) G-P(sol) polarization free energy of solvation -57.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds