Wall clock time and date at job start Mon Mar 30 2020 03:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42893 * 109.47243 * 2 1 4 4 C 1.35746 * 116.99899 * 180.02562 * 3 2 1 5 5 C 1.38022 * 119.92628 * 0.27649 * 4 3 2 6 6 C 1.40752 * 120.17920 * 180.27890 * 5 4 3 7 7 C 1.41074 * 119.98197 * 179.72119 * 6 5 4 8 8 H 1.08001 * 119.99956 * 334.31529 * 7 6 5 9 9 C 1.40183 * 120.00245 * 154.31243 * 7 6 5 10 10 N 1.30679 * 119.99530 * 343.17572 * 9 7 6 11 11 Si 1.86800 * 120.00037 * 163.17158 * 9 7 6 12 12 H 1.48506 * 109.46940 * 90.00493 * 11 9 7 13 13 H 1.48497 * 109.47105 * 210.00170 * 11 9 7 14 14 H 1.48501 * 109.47341 * 330.00622 * 11 9 7 15 15 C 1.40832 * 120.03731 * 359.69819 * 6 5 4 16 16 C 1.38740 * 119.85372 * 0.02562 * 15 6 5 17 17 C 1.47147 * 120.09137 * 180.02562 * 16 15 6 18 18 O 1.21249 * 119.99861 * 179.97438 * 17 16 15 19 19 C 1.40311 * 119.92709 * 179.97438 * 4 3 2 20 20 C 1.43203 * 120.01975 * 0.02562 * 19 4 3 21 21 N 4.92135 * 99.24474 * 0.02562 * 2 1 3 22 22 H 1.09000 * 109.46645 * 59.99971 * 1 2 3 23 23 H 1.08993 * 109.47608 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47030 * 300.00730 * 1 2 3 25 25 H 1.08999 * 109.47030 * 239.99270 * 2 1 3 26 26 H 1.09000 * 109.46645 * 120.00029 * 2 1 3 27 27 H 1.08002 * 119.91380 * 359.97438 * 5 4 3 28 28 H 0.96996 * 119.99339 * 179.97438 * 10 9 7 29 29 H 1.07995 * 120.07555 * 180.02562 * 15 6 5 30 30 H 1.07998 * 119.99559 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3521 1.5250 -0.0005 5 6 4.1914 0.4293 -0.0068 6 6 5.5876 0.6075 -0.0015 7 6 6.4416 -0.5154 -0.0020 8 1 6.0962 -1.4567 0.3993 9 6 7.7385 -0.4095 -0.5235 10 7 8.0524 0.5978 -1.2946 11 14 9.0180 -1.7080 -0.1160 12 1 8.9657 -2.7903 -1.1316 13 1 10.3685 -1.0906 -0.1198 14 1 8.7369 -2.2757 1.2271 15 6 6.1326 1.9061 0.0039 16 6 5.2902 3.0085 0.0044 17 6 5.8540 4.3677 0.0094 18 8 5.1163 5.3300 0.0094 19 6 3.8868 2.8222 -0.0011 20 6 3.0135 3.9571 -0.0006 21 7 2.3206 4.8574 0.0022 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.7758 -0.5675 -0.0109 28 1 8.9499 0.6713 -1.6551 29 1 7.2037 2.0435 0.0075 30 1 6.9248 4.5081 0.0131 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575644044.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:08 Heat of formation + Delta-G solvation = -36.814895 kcal Electronic energy + Delta-G solvation = -16754.976804 eV Core-core repulsion = 13901.460244 eV Total energy + Delta-G solvation = -2853.516560 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.42248 -38.29836 -36.53701 -35.20338 -33.81087 -31.49335 -30.64333 -28.89267 -26.32510 -24.13709 -22.93815 -21.67860 -20.05105 -18.05385 -17.70019 -16.38145 -15.85787 -15.60467 -15.23175 -14.40834 -14.16859 -13.67714 -13.61873 -13.01208 -12.85184 -12.66258 -12.32704 -12.12695 -11.94673 -11.75523 -11.48033 -11.40800 -11.09026 -10.80990 -10.73673 -10.53470 -10.21980 -10.08312 -9.49464 -8.96738 -7.97569 -7.34684 -7.25749 -4.87062 1.48051 2.35631 2.79010 2.83999 2.88934 3.34428 3.57830 3.77251 3.95331 4.02193 4.58416 5.01814 5.19867 5.28353 5.30368 5.32953 5.55600 5.76331 5.91166 6.03543 6.14310 6.34029 6.44476 6.49136 6.62622 6.73153 7.03801 7.28247 7.44874 7.62629 7.91107 8.03752 8.18544 8.33698 8.41818 8.86888 9.64337 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.018794 B = 0.008290 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.497569 B = 3376.649519 C = 4775.193106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.324 6.324 4 C 0.198 3.802 5 C -0.300 4.300 6 C 0.137 3.863 7 C -0.430 4.430 8 H 0.090 0.910 9 C 0.073 3.927 10 N -0.768 5.768 11 Si 0.917 3.083 12 H -0.265 1.265 13 H -0.271 1.271 14 H -0.256 1.256 15 C -0.116 4.116 16 C -0.108 4.108 17 C 0.380 3.620 18 O -0.469 6.469 19 C -0.162 4.162 20 C 0.297 3.703 21 N -0.487 5.487 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.113 0.887 28 H 0.292 0.708 29 H 0.136 0.864 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.480 -6.565 1.455 6.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.017 4.017 3 O -0.238 6.238 4 C 0.150 3.850 5 C -0.321 4.321 6 C 0.133 3.867 7 C -0.457 4.457 8 H 0.108 0.892 9 C -0.149 4.149 10 N -0.390 5.390 11 Si 0.740 3.260 12 H -0.190 1.190 13 H -0.196 1.196 14 H -0.180 1.180 15 C -0.136 4.136 16 C -0.112 4.112 17 C 0.240 3.760 18 O -0.343 6.343 19 C -0.168 4.168 20 C -0.014 4.014 21 N -0.167 5.167 22 H 0.081 0.919 23 H 0.091 0.909 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.131 0.869 28 H 0.104 0.896 29 H 0.154 0.846 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.940 -4.413 1.303 4.696 hybrid contribution 1.130 -1.383 -0.018 1.786 sum 0.190 -5.796 1.286 5.939 Atomic orbital electron populations 1.21764 0.93733 1.02140 1.03145 1.22638 0.94804 0.82783 1.01523 1.85972 1.20476 1.28568 1.88753 1.18441 0.80900 0.92499 0.93158 1.21010 0.93881 0.95798 1.21373 1.17420 0.90654 0.92811 0.85823 1.19829 0.96026 0.97716 1.32177 0.89216 1.26139 0.99578 0.96875 0.92330 1.69694 1.22040 1.27826 1.19484 0.86136 0.78864 0.80411 0.80599 1.19015 1.19552 1.17966 1.21627 0.99327 0.90710 1.01898 1.20206 0.91328 0.95478 1.04155 1.24163 0.94647 0.87349 0.69885 1.90508 1.64697 1.43578 1.35480 1.14656 0.89425 0.85101 1.27618 1.25328 0.91938 0.92026 0.92080 1.80926 1.11740 1.10741 1.13300 0.91889 0.90860 0.91905 0.92087 0.92175 0.86888 0.89642 0.84624 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 10.28 37.16 0.38 -1.46 16 2 C 0.06 0.88 5.45 37.16 0.20 1.09 16 3 O -0.32 -6.52 9.55 -18.95 -0.18 -6.70 16 4 C 0.20 4.29 6.68 -38.88 -0.26 4.03 16 5 C -0.30 -6.31 8.75 -38.71 -0.34 -6.64 16 6 C 0.14 3.02 5.56 -106.89 -0.59 2.43 16 7 C -0.43 -9.22 9.03 -37.78 -0.34 -9.56 16 8 H 0.09 1.82 7.90 -52.49 -0.41 1.40 16 9 C 0.07 1.48 5.15 -17.31 -0.09 1.39 16 10 N -0.77 -16.00 10.95 55.56 0.61 -15.39 16 11 Si 0.92 15.14 29.59 -169.99 -5.03 10.11 16 12 H -0.27 -4.41 7.11 56.52 0.40 -4.00 16 13 H -0.27 -4.40 7.11 56.52 0.40 -4.00 16 14 H -0.26 -4.24 7.11 56.52 0.40 -3.83 16 15 C -0.12 -2.48 8.39 -38.42 -0.32 -2.80 16 16 C -0.11 -2.31 5.89 -104.82 -0.62 -2.93 16 17 C 0.38 7.38 11.42 34.35 0.39 7.77 16 18 O -0.47 -10.71 15.12 5.58 0.08 -10.63 16 19 C -0.16 -3.72 5.81 -105.92 -0.62 -4.33 16 20 C 0.30 7.29 12.26 -22.47 -0.28 7.01 16 21 N -0.49 -12.43 18.40 41.84 0.77 -11.66 16 22 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.89 7.63 -51.93 -0.40 0.49 16 26 H 0.06 0.86 7.66 -51.93 -0.40 0.46 16 27 H 0.11 2.14 6.25 -52.49 -0.33 1.82 16 28 H 0.29 5.46 8.29 -40.82 -0.34 5.12 16 29 H 0.14 2.81 6.18 -52.49 -0.32 2.48 16 30 H 0.10 1.48 8.06 -52.49 -0.42 1.05 16 LS Contribution 276.00 15.07 4.16 4.16 Total: -1.00 -27.42 276.00 -4.75 -32.17 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -2.69 Total: 1.97 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -2.48 Total: -4.02 kcal Atomic # 7 Polarization: -28.43 SS G_CDS: 1.38 Total: -27.06 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.10 Total: -17.33 kcal Atomic # 14 Polarization: 15.14 SS G_CDS: -5.03 Total: 10.11 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -27.42 -4.75 -32.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575644044.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.647 kcal (2) G-P(sol) polarization free energy of solvation -27.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds