Wall clock time and date at job start Mon Mar 30 2020 03:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42893 * 109.47243 * 2 1 4 4 C 1.35746 * 116.99899 * 180.02562 * 3 2 1 5 5 C 1.38022 * 119.92628 * 0.27649 * 4 3 2 6 6 C 1.40752 * 120.17920 * 180.27890 * 5 4 3 7 7 C 1.41074 * 119.98197 * 179.72119 * 6 5 4 8 8 H 1.08001 * 119.99956 * 334.31529 * 7 6 5 9 9 C 1.40183 * 120.00245 * 154.31243 * 7 6 5 10 10 N 1.30679 * 119.99530 * 343.17572 * 9 7 6 11 11 Si 1.86800 * 120.00037 * 163.17158 * 9 7 6 12 12 H 1.48506 * 109.46940 * 90.00493 * 11 9 7 13 13 H 1.48497 * 109.47105 * 210.00170 * 11 9 7 14 14 H 1.48501 * 109.47341 * 330.00622 * 11 9 7 15 15 C 1.40832 * 120.03731 * 359.69819 * 6 5 4 16 16 C 1.38740 * 119.85372 * 0.02562 * 15 6 5 17 17 C 1.47147 * 120.09137 * 180.02562 * 16 15 6 18 18 O 1.21249 * 119.99861 * 179.97438 * 17 16 15 19 19 C 1.40311 * 119.92709 * 179.97438 * 4 3 2 20 20 C 1.43203 * 120.01975 * 0.02562 * 19 4 3 21 21 N 4.92135 * 99.24474 * 0.02562 * 2 1 3 22 22 H 1.09000 * 109.46645 * 59.99971 * 1 2 3 23 23 H 1.08993 * 109.47608 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47030 * 300.00730 * 1 2 3 25 25 H 1.08999 * 109.47030 * 239.99270 * 2 1 3 26 26 H 1.09000 * 109.46645 * 120.00029 * 2 1 3 27 27 H 1.08002 * 119.91380 * 359.97438 * 5 4 3 28 28 H 0.96996 * 119.99339 * 179.97438 * 10 9 7 29 29 H 1.07995 * 120.07555 * 180.02562 * 15 6 5 30 30 H 1.07998 * 119.99559 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3521 1.5250 -0.0005 5 6 4.1914 0.4293 -0.0068 6 6 5.5876 0.6075 -0.0015 7 6 6.4416 -0.5154 -0.0020 8 1 6.0962 -1.4567 0.3993 9 6 7.7385 -0.4095 -0.5235 10 7 8.0524 0.5978 -1.2946 11 14 9.0180 -1.7080 -0.1160 12 1 8.9657 -2.7903 -1.1316 13 1 10.3685 -1.0906 -0.1198 14 1 8.7369 -2.2757 1.2271 15 6 6.1326 1.9061 0.0039 16 6 5.2902 3.0085 0.0044 17 6 5.8540 4.3677 0.0094 18 8 5.1163 5.3300 0.0094 19 6 3.8868 2.8222 -0.0011 20 6 3.0135 3.9571 -0.0006 21 7 2.3206 4.8574 0.0022 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.7758 -0.5675 -0.0109 28 1 8.9499 0.6713 -1.6551 29 1 7.2037 2.0435 0.0075 30 1 6.9248 4.5081 0.0131 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575644044.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:08 Heat of formation + Delta-G solvation = -51.836627 kcal Electronic energy + Delta-G solvation = -16755.628195 eV Core-core repulsion = 13901.460244 eV Total energy + Delta-G solvation = -2854.167951 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.00490 -39.88556 -38.12646 -37.05321 -35.43773 -32.74907 -32.27111 -30.44967 -27.97331 -25.68982 -24.26466 -23.26022 -21.59099 -19.61854 -19.39830 -17.97874 -17.35719 -16.94918 -16.76469 -15.95790 -15.72705 -15.33143 -15.18285 -14.56147 -14.38901 -14.21515 -13.73396 -13.56245 -13.42368 -13.33852 -13.02542 -12.80128 -12.59479 -12.30487 -12.18666 -11.99495 -11.70781 -11.49708 -11.03069 -10.57770 -9.64889 -8.98012 -8.82703 -6.52821 -0.16570 0.72680 1.44177 1.50963 1.63398 1.79931 2.14944 2.19823 2.28240 2.38658 2.85632 3.52800 3.58703 3.59645 4.12013 4.19150 4.39034 4.44048 4.64003 4.74149 4.85695 4.91089 4.96809 5.06873 5.14910 5.24045 5.39053 5.64442 5.82044 5.99528 6.33285 6.44842 6.61327 6.70113 6.79210 7.03057 8.11344 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.018794 B = 0.008290 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.497569 B = 3376.649519 C = 4775.193106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.046 3.954 3 O -0.343 6.343 4 C 0.200 3.800 5 C -0.309 4.309 6 C 0.114 3.886 7 C -0.441 4.441 8 H 0.098 0.902 9 C 0.042 3.958 10 N -0.785 5.785 11 Si 0.986 3.014 12 H -0.264 1.264 13 H -0.264 1.264 14 H -0.255 1.255 15 C -0.115 4.115 16 C -0.114 4.114 17 C 0.387 3.613 18 O -0.506 6.506 19 C -0.202 4.202 20 C 0.304 3.696 21 N -0.522 5.522 22 H 0.057 0.943 23 H 0.107 0.893 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.130 0.870 28 H 0.304 0.696 29 H 0.143 0.857 30 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.977 -8.531 1.548 8.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.028 4.028 3 O -0.258 6.258 4 C 0.152 3.848 5 C -0.329 4.329 6 C 0.110 3.890 7 C -0.467 4.467 8 H 0.116 0.884 9 C -0.179 4.179 10 N -0.408 5.408 11 Si 0.806 3.194 12 H -0.189 1.189 13 H -0.188 1.188 14 H -0.179 1.179 15 C -0.135 4.135 16 C -0.118 4.118 17 C 0.249 3.751 18 O -0.381 6.381 19 C -0.209 4.209 20 C -0.005 4.005 21 N -0.203 5.203 22 H 0.076 0.924 23 H 0.126 0.874 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.147 0.853 28 H 0.116 0.884 29 H 0.160 0.840 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.544 -6.378 1.392 6.551 hybrid contribution 0.741 -0.928 -0.088 1.191 sum 1.285 -7.307 1.303 7.532 Atomic orbital electron populations 1.21801 0.91423 1.04247 1.02714 1.23027 0.96657 0.80810 1.02301 1.85968 1.19730 1.31624 1.88435 1.18530 0.81732 0.92247 0.92256 1.21135 0.93601 0.96350 1.21823 1.17787 0.91398 0.93524 0.86306 1.20182 0.96864 0.97885 1.31799 0.88371 1.26888 1.00702 0.98691 0.91638 1.69698 1.23183 1.28776 1.19126 0.85105 0.76438 0.77741 0.80137 1.18882 1.18820 1.17883 1.21677 0.99471 0.90538 1.01823 1.20484 0.90841 0.96731 1.03728 1.24780 0.96464 0.85850 0.67991 1.90506 1.65998 1.44331 1.37306 1.14987 0.90177 0.85188 1.30532 1.25696 0.91575 0.91962 0.91285 1.80889 1.12709 1.11582 1.15132 0.92414 0.87424 0.92240 0.91456 0.91138 0.85257 0.88445 0.83972 0.83185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 10.28 71.98 0.74 -2.59 16 2 C 0.05 1.37 5.45 71.98 0.39 1.76 16 3 O -0.34 -13.92 9.55 -90.71 -0.87 -14.79 16 4 C 0.20 8.78 6.68 22.72 0.15 8.93 16 5 C -0.31 -12.85 8.75 22.83 0.20 -12.65 16 6 C 0.11 4.95 5.56 -21.33 -0.12 4.83 16 7 C -0.44 -18.17 9.03 23.44 0.21 -17.95 16 8 H 0.10 3.78 7.90 -2.91 -0.02 3.76 16 9 C 0.04 1.61 5.15 85.34 0.44 2.05 16 10 N -0.79 -31.09 10.95 21.87 0.24 -30.85 16 11 Si 0.99 28.72 29.59 68.60 2.03 30.75 16 12 H -0.26 -7.65 7.11 99.48 0.71 -6.95 16 13 H -0.26 -7.38 7.11 99.48 0.71 -6.68 16 14 H -0.26 -7.39 7.11 99.48 0.71 -6.68 16 15 C -0.12 -4.85 8.39 23.02 0.19 -4.65 16 16 C -0.11 -4.88 5.89 -20.00 -0.12 -5.00 16 17 C 0.39 14.74 11.42 70.16 0.80 15.54 16 18 O -0.51 -23.22 15.12 -2.93 -0.04 -23.26 16 19 C -0.20 -9.47 5.81 -20.70 -0.12 -9.59 16 20 C 0.30 15.34 12.26 88.33 1.08 16.42 16 21 N -0.52 -27.43 18.40 19.01 0.35 -27.08 16 22 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.07 1.89 7.63 -2.39 -0.02 1.87 16 26 H 0.07 1.92 7.66 -2.39 -0.02 1.90 16 27 H 0.13 4.78 6.25 -2.91 -0.02 4.76 16 28 H 0.30 10.60 8.29 -92.71 -0.77 9.83 16 29 H 0.14 5.68 6.18 -2.91 -0.02 5.66 16 30 H 0.15 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -58.82 276.00 6.74 -52.08 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 1.17 Total: 16.05 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 3.86 Total: -2.91 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.59 Total: -57.92 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -0.91 Total: -38.05 kcal Atomic # 14 Polarization: 28.72 SS G_CDS: 2.03 Total: 30.75 kcal Total: -58.82 6.74 -52.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575644044.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.245 kcal (2) G-P(sol) polarization free energy of solvation -58.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds