Wall clock time and date at job start Mon Mar 30 2020 03:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.46786 * 2 1 4 4 C 1.35186 * 116.99847 * 179.97438 * 3 2 1 5 5 C 1.41421 * 120.15734 * 90.00361 * 4 3 2 6 6 C 1.41210 * 120.13585 * 359.97438 * 5 4 3 7 7 H 1.08005 * 120.00123 * 26.26790 * 6 5 4 8 8 C 1.39935 * 119.99873 * 206.27462 * 6 5 4 9 9 N 1.30864 * 119.99931 * 199.38381 * 8 6 5 10 10 Si 1.86794 * 120.00077 * 19.38755 * 8 6 5 11 11 H 1.48499 * 109.46903 * 264.72383 * 10 8 6 12 12 H 1.48494 * 109.47588 * 144.72257 * 10 8 6 13 13 H 1.48501 * 109.47121 * 24.72103 * 10 8 6 14 14 C 1.40297 * 119.72986 * 179.69926 * 5 4 3 15 15 C 1.39323 * 120.05181 * 0.27922 * 14 5 4 16 16 C 1.43201 * 119.84316 * 179.97438 * 15 14 5 17 17 N 7.48280 * 162.53595 * 0.22249 * 2 1 3 18 18 C 1.39645 * 120.32638 * 359.97438 * 15 14 5 19 19 C 1.39804 * 120.26953 * 0.02562 * 18 15 14 20 20 C 1.46825 * 120.02800 * 180.02562 * 19 18 15 21 21 O 1.21294 * 120.00047 * 179.97438 * 20 19 18 22 22 H 1.09007 * 109.47478 * 59.99603 * 1 2 3 23 23 H 1.09001 * 109.47276 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47521 * 299.99569 * 1 2 3 25 25 H 1.08994 * 109.47055 * 240.00691 * 2 1 3 26 26 H 1.08995 * 109.47418 * 119.99974 * 2 1 3 27 27 H 0.97000 * 119.99608 * 359.97438 * 9 8 6 28 28 H 1.08001 * 119.97445 * 180.25046 * 14 5 4 29 29 H 1.08002 * 119.86873 * 179.97438 * 18 15 14 30 30 H 1.08001 * 120.00115 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3464 1.5245 0.0005 5 6 4.0513 1.6175 -1.2220 6 6 3.3581 1.5251 -2.4488 7 1 2.3162 1.8045 -2.5027 8 6 4.0211 1.0714 -3.5945 9 7 3.5318 1.3320 -4.7800 10 14 5.6044 0.0938 -3.4320 11 1 6.7667 1.0091 -3.5603 12 1 5.6636 -0.9343 -4.5018 13 1 5.6419 -0.5706 -2.1044 14 6 5.4413 1.8077 -1.2110 15 6 6.1235 1.8985 0.0004 16 6 7.5423 2.0921 0.0065 17 7 8.6679 2.2456 0.0087 18 6 5.4305 1.8016 1.2089 19 6 4.0453 1.6120 1.2137 20 6 3.3219 1.5115 2.4874 21 8 2.1201 1.3475 2.4910 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 2.7093 1.8393 -4.8643 28 1 5.9829 1.8833 -2.1422 29 1 5.9668 1.8726 2.1437 30 1 3.8598 1.5844 3.4212 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575644500.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:30 Heat of formation + Delta-G solvation = -34.191560 kcal Electronic energy + Delta-G solvation = -17173.786080 eV Core-core repulsion = 14320.383277 eV Total energy + Delta-G solvation = -2853.402804 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.54769 -37.70816 -37.00277 -35.59100 -34.07079 -31.28655 -31.04892 -29.41647 -25.26212 -24.19881 -22.72551 -21.82942 -20.88307 -18.44818 -17.32972 -17.11427 -16.09745 -15.14308 -14.72875 -14.44448 -14.03663 -13.92786 -13.62019 -13.25672 -13.22499 -13.02171 -12.81144 -12.33158 -12.16073 -11.75231 -11.54663 -11.30601 -11.10427 -10.84334 -10.55126 -10.20642 -9.81627 -9.49978 -9.38669 -8.76720 -8.20147 -7.95393 -7.59839 -4.84273 1.24461 1.70319 2.85970 3.05185 3.13934 3.16484 3.30333 3.55594 3.76538 4.23886 4.47675 4.52612 4.79221 5.04866 5.58048 5.66679 5.71412 5.75898 5.93867 6.06914 6.11014 6.28542 6.42939 6.50497 6.55519 6.72439 6.98167 7.16992 7.23009 7.29148 7.77947 7.93234 7.98264 8.09275 8.33116 8.59306 9.68284 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.016046 B = 0.012297 C = 0.007450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.518983 B = 2276.506107 C = 3757.482756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.074 3.926 3 O -0.313 6.313 4 C 0.084 3.916 5 C 0.061 3.939 6 C -0.479 4.479 7 H 0.092 0.908 8 C 0.041 3.959 9 N -0.791 5.791 10 Si 1.056 2.944 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.256 1.256 14 C -0.174 4.174 15 C -0.005 4.005 16 C 0.273 3.727 17 N -0.454 5.454 18 C -0.149 4.149 19 C -0.175 4.175 20 C 0.378 3.622 21 O -0.455 6.455 22 H 0.058 0.942 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.049 0.951 26 H 0.040 0.960 27 H 0.293 0.707 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.292 -2.876 6.839 7.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.000 4.000 3 O -0.229 6.229 4 C 0.037 3.963 5 C 0.057 3.943 6 C -0.506 4.506 7 H 0.110 0.890 8 C -0.182 4.182 9 N -0.411 5.411 10 Si 0.881 3.119 11 H -0.199 1.199 12 H -0.208 1.208 13 H -0.180 1.180 14 C -0.196 4.196 15 C -0.008 4.008 16 C -0.041 4.041 17 N -0.131 5.131 18 C -0.172 4.172 19 C -0.177 4.177 20 C 0.237 3.763 21 O -0.328 6.328 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.104 0.896 28 H 0.134 0.866 29 H 0.136 0.864 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.720 -3.329 5.858 6.777 hybrid contribution -1.358 0.741 0.646 1.676 sum -0.637 -2.588 6.504 7.029 Atomic orbital electron populations 1.21667 0.94452 1.01305 1.02692 1.22390 0.94475 0.83643 0.99505 1.85782 1.17606 1.25598 1.93912 1.19064 0.83451 1.03018 0.90739 1.17828 0.90811 0.92429 0.93187 1.20689 1.00234 1.36999 0.92646 0.88994 1.27359 1.04009 0.95478 0.91342 1.70538 1.18819 1.26535 1.25216 0.83790 0.73405 0.76965 0.77694 1.19924 1.20812 1.18044 1.21088 0.94700 1.08533 0.95319 1.15660 0.83409 1.06721 0.95019 1.26133 0.93048 0.92521 0.92369 1.81122 1.12365 1.10694 1.08883 1.20327 0.92042 1.09342 0.95446 1.20720 0.94092 1.07963 0.94928 1.23821 0.88890 0.71361 0.92212 1.90507 1.17471 1.34180 1.90622 0.92265 0.91812 0.91982 0.93293 0.94193 0.89558 0.86569 0.86400 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 10.28 37.16 0.38 -1.86 16 2 C 0.07 1.38 6.11 37.16 0.23 1.61 16 3 O -0.31 -6.77 7.75 -39.28 -0.30 -7.08 16 4 C 0.08 1.80 5.77 -37.60 -0.22 1.59 16 5 C 0.06 1.39 5.19 -106.78 -0.55 0.84 16 6 C -0.48 -11.51 9.08 -37.82 -0.34 -11.85 16 7 H 0.09 2.35 7.82 -52.48 -0.41 1.94 16 8 C 0.04 0.96 5.40 -17.33 -0.09 0.87 16 9 N -0.79 -19.33 13.66 55.55 0.76 -18.57 16 10 Si 1.06 21.91 24.83 -169.99 -4.22 17.69 16 11 H -0.27 -5.50 6.66 56.52 0.38 -5.13 16 12 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 13 H -0.26 -5.13 6.83 56.52 0.39 -4.75 16 14 C -0.17 -3.70 6.86 -38.40 -0.26 -3.96 16 15 C 0.00 -0.09 5.72 -107.04 -0.61 -0.70 16 16 C 0.27 5.12 15.30 -22.47 -0.34 4.78 16 17 N -0.45 -8.87 18.54 41.84 0.78 -8.09 16 18 C -0.15 -2.54 9.47 -38.47 -0.36 -2.91 16 19 C -0.18 -3.24 5.87 -105.07 -0.62 -3.85 16 20 C 0.38 6.07 11.43 34.20 0.39 6.46 16 21 O -0.45 -8.65 14.76 -16.48 -0.24 -8.89 16 22 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.04 0.72 7.46 -51.93 -0.39 0.33 16 27 H 0.29 6.96 8.72 -40.82 -0.36 6.60 16 28 H 0.12 2.48 4.34 -52.49 -0.23 2.25 16 29 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.09 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 273.64 15.07 4.12 4.12 Total: -1.00 -25.84 273.64 -4.27 -30.12 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -2.75 Total: -0.30 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -2.41 Total: -8.99 kcal Atomic # 7 Polarization: -28.20 SS G_CDS: 1.53 Total: -26.66 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.55 Total: -15.97 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.22 Total: 17.69 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -25.84 -4.27 -30.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575644500.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.076 kcal (2) G-P(sol) polarization free energy of solvation -25.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds