Wall clock time and date at job start Mon Mar 30 2020 03:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34762 * 116.99734 * 2 1 4 4 O 1.21515 * 120.00322 * 0.02562 * 3 2 1 5 5 C 1.47421 * 119.99653 * 180.02562 * 3 2 1 6 6 C 1.40230 * 119.84920 * 0.02562 * 5 3 2 7 7 C 1.36335 * 120.34978 * 179.97438 * 6 5 3 8 8 C 1.39805 * 119.96655 * 0.02562 * 7 6 5 9 9 C 1.46421 * 133.79602 * 179.97438 * 8 7 6 10 10 C 1.34515 * 107.09439 * 180.24344 * 9 8 7 11 11 N 1.36773 * 109.97855 * 359.60296 * 10 9 8 12 12 C 1.37132 * 125.09721 * 180.13428 * 11 10 9 13 13 H 1.08009 * 119.99731 * 159.12273 * 12 11 10 14 14 C 1.38919 * 120.00386 * 339.12762 * 12 11 10 15 15 N 1.31388 * 119.99886 * 349.08473 * 14 12 11 16 16 Si 1.86801 * 120.00050 * 169.08708 * 14 12 11 17 17 H 1.48501 * 109.47083 * 94.76311 * 16 14 12 18 18 H 1.48506 * 109.46784 * 214.76273 * 16 14 12 19 19 H 1.48497 * 109.47082 * 334.75939 * 16 14 12 20 20 C 1.38206 * 109.79790 * 0.41253 * 11 10 9 21 21 C 1.38489 * 133.36144 * 179.72930 * 20 11 10 22 22 H 1.09003 * 109.46809 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46453 * 299.99378 * 1 2 3 24 24 H 1.08995 * 109.47296 * 59.99370 * 1 2 3 25 25 H 1.08001 * 119.82670 * 359.97438 * 6 5 3 26 26 H 1.08002 * 120.01735 * 180.02562 * 7 6 5 27 27 H 1.08001 * 126.45141 * 359.97438 * 9 8 7 28 28 H 1.07998 * 125.00714 * 179.75900 * 10 9 8 29 29 H 0.96999 * 120.00332 * 180.02562 * 15 14 12 30 30 H 1.07999 * 120.16916 * 359.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4020 2.2199 0.0005 5 6 3.5360 1.2779 -0.0006 6 6 4.2966 0.0998 -0.0017 7 6 5.6587 0.1593 -0.0027 8 6 6.3036 1.3997 -0.0022 9 6 7.7087 1.8113 -0.0025 10 6 7.7267 3.1564 0.0038 11 7 6.4477 3.6408 -0.0007 12 6 6.1078 4.9694 0.0010 13 1 5.1287 5.2767 -0.3360 14 6 7.0226 5.9199 0.4360 15 7 8.1247 5.5415 1.0431 16 14 6.6860 7.7362 0.1580 17 1 6.0427 8.3111 1.3666 18 1 7.9658 8.4422 -0.1049 19 1 5.7822 7.8991 -1.0089 20 6 5.5493 2.5906 -0.0010 21 6 4.1661 2.5225 0.0001 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 3.8009 -0.8597 -0.0017 26 1 6.2392 -0.7515 -0.0040 27 1 8.5687 1.1581 -0.0029 28 1 8.6195 3.7640 0.0090 29 1 8.7634 6.2051 1.3473 30 1 3.5781 3.4284 0.0018 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688165769.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:56 Heat of formation + Delta-G solvation = -29.982530 kcal Electronic energy + Delta-G solvation = -16770.072998 eV Core-core repulsion = 13916.852712 eV Total energy + Delta-G solvation = -2853.220287 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.34615 -39.69358 -36.40334 -35.78647 -33.32730 -31.17966 -29.02288 -28.86158 -27.03154 -25.00113 -22.95040 -21.35616 -20.08035 -19.90828 -18.08972 -16.71415 -16.38545 -15.96742 -15.56231 -15.25826 -14.46075 -13.87915 -13.60911 -13.17470 -13.10238 -12.99622 -12.58820 -11.97787 -11.94145 -11.83441 -11.42073 -11.06054 -10.79357 -10.69628 -10.55969 -10.51690 -10.19914 -9.92128 -9.35467 -8.78888 -7.34593 -7.04578 -6.74835 -4.44008 1.48308 2.30160 2.88264 2.97691 3.03011 3.09393 3.25705 3.72040 3.94227 4.63884 4.67326 4.89967 5.22514 5.29838 5.30812 5.60155 5.65338 5.83392 6.15522 6.22023 6.30593 6.57174 6.72328 6.85612 6.87800 6.93806 7.03349 7.14377 7.40755 7.47548 7.77527 7.98492 8.24006 8.31684 8.81063 9.23202 10.12407 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.027203 B = 0.006612 C = 0.005378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.040573 B = 4233.854330 C = 5204.662945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.516 3.484 4 O -0.526 6.526 5 C -0.165 4.165 6 C -0.118 4.118 7 C -0.096 4.096 8 C -0.092 4.092 9 C -0.280 4.280 10 C 0.088 3.912 11 N -0.275 5.275 12 C -0.340 4.340 13 H 0.110 0.890 14 C 0.044 3.956 15 N -0.845 5.845 16 Si 0.942 3.058 17 H -0.270 1.270 18 H -0.274 1.274 19 H -0.262 1.262 20 C 0.023 3.977 21 C -0.011 4.011 22 H 0.096 0.904 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.119 0.881 26 H 0.112 0.888 27 H 0.128 0.872 28 H 0.175 0.825 29 H 0.282 0.718 30 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.290 -6.169 -1.634 8.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.364 3.636 4 O -0.417 6.417 5 C -0.168 4.168 6 C -0.138 4.138 7 C -0.114 4.114 8 C -0.099 4.099 9 C -0.303 4.303 10 C -0.050 4.050 11 N 0.063 4.937 12 C -0.468 4.468 13 H 0.127 0.873 14 C -0.165 4.165 15 N -0.477 5.477 16 Si 0.766 3.234 17 H -0.196 1.196 18 H -0.199 1.199 19 H -0.186 1.186 20 C -0.087 4.087 21 C -0.031 4.031 22 H 0.115 0.885 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.137 0.863 26 H 0.130 0.870 27 H 0.146 0.854 28 H 0.191 0.809 29 H 0.093 0.907 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.409 -5.389 -1.530 7.787 hybrid contribution -0.261 0.950 0.075 0.988 sum -5.670 -4.439 -1.455 7.346 Atomic orbital electron populations 1.23161 0.77251 1.03029 1.02247 1.86578 1.22517 1.33425 1.84960 1.21332 0.89442 0.80768 0.72026 1.90783 1.67128 1.36063 1.47751 1.18223 0.87401 0.94243 1.16910 1.20406 0.93458 0.96345 1.03592 1.19934 0.93408 0.95611 1.02481 1.19241 0.93663 0.91915 1.05089 1.21367 0.93732 0.94105 1.21110 1.22210 0.88482 0.93215 1.01053 1.40252 1.03635 1.04050 1.45716 1.19985 1.03075 0.79437 1.44282 0.87276 1.25551 0.95281 1.02069 0.93639 1.69851 1.09805 1.36318 1.31687 0.85662 0.78690 0.79525 0.79551 1.19551 1.19892 1.18619 1.18111 0.90877 0.88256 1.11419 1.19952 0.91405 0.96312 0.95455 0.88536 0.92239 0.92256 0.86322 0.86951 0.85364 0.80854 0.90686 0.85950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.57 101.05 1.07 1.51 16 2 O -0.36 -5.78 9.78 -40.66 -0.40 -6.17 16 3 C 0.52 9.98 7.88 34.47 0.27 10.25 16 4 O -0.53 -11.20 16.11 -19.28 -0.31 -11.51 16 5 C -0.16 -3.38 5.88 -104.94 -0.62 -4.00 16 6 C -0.12 -2.20 9.54 -39.52 -0.38 -2.58 16 7 C -0.10 -1.86 10.03 -39.68 -0.40 -2.26 16 8 C -0.09 -2.09 6.37 -104.98 -0.67 -2.75 16 9 C -0.28 -6.24 11.08 -37.61 -0.42 -6.65 16 10 C 0.09 2.14 9.89 -16.66 -0.16 1.98 16 11 N -0.28 -7.08 2.91 -59.76 -0.17 -7.26 16 12 C -0.34 -8.71 9.93 -14.93 -0.15 -8.86 16 13 H 0.11 2.70 7.85 -52.48 -0.41 2.28 16 14 C 0.04 1.07 5.35 -17.49 -0.09 0.97 16 15 N -0.85 -21.01 10.84 55.49 0.60 -20.41 16 16 Si 0.94 18.57 29.57 -169.99 -5.03 13.54 16 17 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 18 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 19 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 20 C 0.02 0.57 6.74 -83.86 -0.57 0.00 16 21 C -0.01 -0.26 9.48 -39.02 -0.37 -0.63 16 22 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.12 1.89 7.58 -52.49 -0.40 1.50 16 26 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 27 H 0.13 2.46 8.06 -52.49 -0.42 2.04 16 28 H 0.17 4.20 6.32 -52.49 -0.33 3.87 16 29 H 0.28 6.45 8.31 -40.82 -0.34 6.11 16 30 H 0.12 2.79 7.63 -52.49 -0.40 2.39 16 LS Contribution 271.49 15.07 4.09 4.09 Total: -1.00 -28.23 271.49 -6.49 -34.72 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -2.79 Total: 6.02 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -2.48 Total: -13.02 kcal Atomic # 7 Polarization: -28.09 SS G_CDS: 0.43 Total: -27.67 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.71 Total: -17.69 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -28.23 -6.49 -34.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688165769.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.735 kcal (2) G-P(sol) polarization free energy of solvation -28.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds