Wall clock time and date at job start Mon Mar 30 2020 03:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34762 * 116.99734 * 2 1 4 4 O 1.21515 * 120.00322 * 0.02562 * 3 2 1 5 5 C 1.47421 * 119.99653 * 180.02562 * 3 2 1 6 6 C 1.40230 * 119.84920 * 0.02562 * 5 3 2 7 7 C 1.36335 * 120.34978 * 179.97438 * 6 5 3 8 8 C 1.39805 * 119.96655 * 0.02562 * 7 6 5 9 9 C 1.46421 * 133.79602 * 179.97438 * 8 7 6 10 10 C 1.34515 * 107.09439 * 180.24344 * 9 8 7 11 11 N 1.36773 * 109.97855 * 359.60296 * 10 9 8 12 12 C 1.37132 * 125.09721 * 180.13428 * 11 10 9 13 13 H 1.08009 * 119.99731 * 159.12273 * 12 11 10 14 14 C 1.38919 * 120.00386 * 339.12762 * 12 11 10 15 15 N 1.31388 * 119.99886 * 349.08473 * 14 12 11 16 16 Si 1.86801 * 120.00050 * 169.08708 * 14 12 11 17 17 H 1.48501 * 109.47083 * 94.76311 * 16 14 12 18 18 H 1.48506 * 109.46784 * 214.76273 * 16 14 12 19 19 H 1.48497 * 109.47082 * 334.75939 * 16 14 12 20 20 C 1.38206 * 109.79790 * 0.41253 * 11 10 9 21 21 C 1.38489 * 133.36144 * 179.72930 * 20 11 10 22 22 H 1.09003 * 109.46809 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46453 * 299.99378 * 1 2 3 24 24 H 1.08995 * 109.47296 * 59.99370 * 1 2 3 25 25 H 1.08001 * 119.82670 * 359.97438 * 6 5 3 26 26 H 1.08002 * 120.01735 * 180.02562 * 7 6 5 27 27 H 1.08001 * 126.45141 * 359.97438 * 9 8 7 28 28 H 1.07998 * 125.00714 * 179.75900 * 10 9 8 29 29 H 0.96999 * 120.00332 * 180.02562 * 15 14 12 30 30 H 1.07999 * 120.16916 * 359.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4020 2.2199 0.0005 5 6 3.5360 1.2779 -0.0006 6 6 4.2966 0.0998 -0.0017 7 6 5.6587 0.1593 -0.0027 8 6 6.3036 1.3997 -0.0022 9 6 7.7087 1.8113 -0.0025 10 6 7.7267 3.1564 0.0038 11 7 6.4477 3.6408 -0.0007 12 6 6.1078 4.9694 0.0010 13 1 5.1287 5.2767 -0.3360 14 6 7.0226 5.9199 0.4360 15 7 8.1247 5.5415 1.0431 16 14 6.6860 7.7362 0.1580 17 1 6.0427 8.3111 1.3666 18 1 7.9658 8.4422 -0.1049 19 1 5.7822 7.8991 -1.0089 20 6 5.5493 2.5906 -0.0010 21 6 4.1661 2.5225 0.0001 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 3.8009 -0.8597 -0.0017 26 1 6.2392 -0.7515 -0.0040 27 1 8.5687 1.1581 -0.0029 28 1 8.6195 3.7640 0.0090 29 1 8.7634 6.2051 1.3473 30 1 3.5781 3.4284 0.0018 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688165769.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:56 Heat of formation + Delta-G solvation = -44.279383 kcal Electronic energy + Delta-G solvation = -16770.692956 eV Core-core repulsion = 13916.852712 eV Total energy + Delta-G solvation = -2853.840245 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.03145 -41.21583 -37.96577 -37.31581 -35.12355 -32.91073 -30.68986 -30.46425 -28.24284 -26.82924 -24.52351 -23.00663 -21.79776 -21.51213 -19.76984 -18.31917 -17.89310 -17.35189 -17.30535 -16.91478 -16.09469 -15.36774 -15.33103 -14.83716 -14.66190 -14.32260 -14.10943 -13.70592 -13.61957 -13.05383 -12.96915 -12.82451 -12.43521 -12.31666 -12.17075 -11.81644 -11.77466 -11.50578 -11.12474 -10.50741 -9.08786 -8.83417 -8.51793 -6.33545 -0.18258 0.68911 1.28886 1.34537 1.49115 1.65240 1.73676 2.07697 2.18931 2.85642 2.94738 3.16942 3.90291 3.99849 4.24689 4.35842 4.36673 4.47210 4.55364 4.66484 4.71475 4.97007 5.08649 5.12100 5.22263 5.30538 5.32617 5.48898 5.67101 5.75209 6.11531 6.29301 6.48050 6.75917 7.00104 7.40492 8.33251 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.027203 B = 0.006612 C = 0.005378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.040573 B = 4233.854330 C = 5204.662945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.521 3.479 4 O -0.551 6.551 5 C -0.158 4.158 6 C -0.107 4.107 7 C -0.087 4.087 8 C -0.108 4.108 9 C -0.273 4.273 10 C 0.063 3.937 11 N -0.300 5.300 12 C -0.377 4.377 13 H 0.101 0.899 14 C 0.008 3.992 15 N -0.873 5.873 16 Si 1.010 2.990 17 H -0.267 1.267 18 H -0.262 1.262 19 H -0.261 1.261 20 C -0.004 4.004 21 C -0.042 4.042 22 H 0.140 0.860 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.158 0.842 26 H 0.154 0.846 27 H 0.160 0.840 28 H 0.166 0.834 29 H 0.289 0.711 30 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.108 -8.224 -1.741 10.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.369 3.631 4 O -0.444 6.444 5 C -0.161 4.161 6 C -0.126 4.126 7 C -0.105 4.105 8 C -0.115 4.115 9 C -0.297 4.297 10 C -0.073 4.073 11 N 0.037 4.963 12 C -0.504 4.504 13 H 0.119 0.881 14 C -0.199 4.199 15 N -0.505 5.505 16 Si 0.830 3.170 17 H -0.192 1.192 18 H -0.186 1.186 19 H -0.185 1.185 20 C -0.114 4.114 21 C -0.062 4.062 22 H 0.158 0.842 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.175 0.825 26 H 0.171 0.829 27 H 0.178 0.822 28 H 0.183 0.817 29 H 0.099 0.901 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.229 -7.482 -1.638 9.873 hybrid contribution -0.173 1.358 0.112 1.374 sum -6.402 -6.124 -1.526 8.989 Atomic orbital electron populations 1.23603 0.74483 1.05990 1.02420 1.86544 1.25069 1.31081 1.84040 1.21145 0.89022 0.81416 0.71488 1.90776 1.67598 1.37292 1.48781 1.18526 0.88651 0.94107 1.14810 1.20815 0.93259 0.97015 1.01533 1.20376 0.93966 0.95692 1.00468 1.19662 0.93680 0.92692 1.05425 1.21730 0.94780 0.93573 1.19590 1.22318 0.88189 0.94257 1.02563 1.40434 1.04252 1.04316 1.47330 1.20197 1.03595 0.80449 1.46196 0.88101 1.26455 0.94757 1.05941 0.92725 1.69917 1.10529 1.37805 1.32246 0.84687 0.78897 0.74129 0.79304 1.19229 1.18566 1.18540 1.18590 0.91674 0.89000 1.12116 1.19956 0.91037 0.97011 0.98166 0.84164 0.92184 0.92105 0.82455 0.82874 0.82230 0.81692 0.90099 0.87623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.57 113.37 1.20 1.77 16 2 O -0.35 -10.21 9.78 -56.73 -0.55 -10.76 16 3 C 0.52 19.39 7.88 70.24 0.55 19.95 16 4 O -0.55 -23.35 16.11 19.79 0.32 -23.03 16 5 C -0.16 -6.32 5.88 -20.07 -0.12 -6.43 16 6 C -0.11 -3.62 9.54 22.31 0.21 -3.41 16 7 C -0.09 -3.09 10.03 22.20 0.22 -2.86 16 8 C -0.11 -4.80 6.37 -20.10 -0.13 -4.93 16 9 C -0.27 -12.07 11.08 23.55 0.26 -11.81 16 10 C 0.06 3.17 9.89 83.07 0.82 3.99 16 11 N -0.30 -16.17 2.91 -343.00 -1.00 -17.17 16 12 C -0.38 -20.39 9.93 84.03 0.83 -19.55 16 13 H 0.10 5.36 7.85 -2.91 -0.02 5.33 16 14 C 0.01 0.38 5.35 84.92 0.45 0.83 16 15 N -0.87 -44.77 10.84 21.66 0.23 -44.53 16 16 Si 1.01 38.92 29.57 68.60 2.03 40.95 16 17 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 18 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 19 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 20 C 0.00 -0.22 6.74 38.87 0.26 0.04 16 21 C -0.04 -1.95 9.48 22.63 0.21 -1.73 16 22 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.16 4.17 7.58 -2.91 -0.02 4.15 16 26 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 27 H 0.16 5.82 8.06 -2.91 -0.02 5.80 16 28 H 0.17 8.37 6.32 -2.91 -0.02 8.35 16 29 H 0.29 13.47 8.31 -92.71 -0.77 12.70 16 30 H 0.11 5.15 7.63 -2.91 -0.02 5.13 16 Total: -1.00 -63.29 271.49 6.98 -56.31 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 1.16 Total: 22.39 kcal Atomic # 6 Polarization: -28.94 SS G_CDS: 4.79 Total: -24.15 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: -0.76 Total: -61.71 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -0.24 Total: -33.79 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Total: -63.29 6.98 -56.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688165769.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.028 kcal (2) G-P(sol) polarization free energy of solvation -63.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds