Wall clock time and date at job start Mon Mar 30 2020 03:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 C 1.50700 * 109.47042 * 302.05359 * 3 2 1 5 5 O 1.21286 * 120.00228 * 0.02562 * 4 3 2 6 6 N 1.34783 * 119.99575 * 180.02562 * 4 3 2 7 7 C 1.39986 * 119.99597 * 175.49172 * 6 4 3 8 8 C 1.38914 * 120.00328 * 215.12337 * 7 6 4 9 9 C 1.38004 * 120.00321 * 180.02562 * 8 7 6 10 10 C 1.38906 * 119.99637 * 0.02562 * 9 8 7 11 11 O 1.35780 * 119.99544 * 179.97438 * 10 9 8 12 12 C 1.34814 * 117.00386 * 5.34527 * 11 10 9 13 13 H 1.08001 * 119.99395 * 354.96428 * 12 11 10 14 14 C 1.38627 * 120.00361 * 174.96175 * 12 11 10 15 15 N 1.31571 * 119.99963 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00214 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47087 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47358 * 119.99980 * 16 14 12 19 19 H 1.48498 * 109.47478 * 240.00341 * 16 14 12 20 20 C 1.38906 * 120.00519 * 0.25484 * 10 9 8 21 21 C 1.37994 * 120.00186 * 359.45181 * 20 10 9 22 22 H 4.43225 * 5.59120 * 179.97438 * 4 1 2 23 23 H 1.09008 * 109.46702 * 182.05791 * 3 2 1 24 24 H 1.08996 * 109.47339 * 62.05766 * 3 2 1 25 25 H 0.97003 * 119.99962 * 355.49585 * 6 4 3 26 26 H 1.08005 * 120.00053 * 0.02562 * 8 7 6 27 27 H 1.08002 * 120.00231 * 180.02562 * 9 8 7 28 28 H 0.97001 * 120.00332 * 179.97438 * 15 14 12 29 29 H 1.08003 * 119.99924 * 179.70124 * 20 10 9 30 30 H 1.08003 * 120.00725 * 180.27620 * 21 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1486 -0.7532 1.2042 5 8 2.3607 -1.2432 1.9853 6 7 4.4739 -0.8828 1.4132 7 6 4.9414 -1.5003 2.5792 8 6 6.1101 -1.0523 3.1818 9 6 6.5713 -1.6614 4.3311 10 6 5.8671 -2.7229 4.8850 11 8 6.3211 -3.3225 6.0154 12 6 7.3973 -2.7707 6.6111 13 1 7.9070 -1.9412 6.1437 14 6 7.8496 -3.2680 7.8235 15 7 7.2283 -4.2782 8.3931 16 14 9.3403 -2.5029 8.6491 17 1 9.8527 -1.3887 7.8116 18 1 8.9531 -1.9804 9.9842 19 1 10.4001 -3.5309 8.8083 20 6 4.7015 -3.1747 4.2793 21 6 4.2370 -2.5618 3.1335 22 1 -1.0499 0.0001 0.0002 23 1 3.0088 1.0279 0.0369 24 1 3.0096 -0.4807 -0.9078 25 1 5.1036 -0.5481 0.7556 26 1 6.6579 -0.2272 2.7509 27 1 7.4797 -1.3128 4.7998 28 1 7.5450 -4.6264 9.2413 29 1 4.1567 -4.0032 4.7074 30 1 3.3284 -2.9102 2.6650 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692867945.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:55 Heat of formation + Delta-G solvation = 22.521975 kcal Electronic energy + Delta-G solvation = -16143.121451 eV Core-core repulsion = 13292.177931 eV Total energy + Delta-G solvation = -2850.943520 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.16588 -38.68693 -36.56484 -34.00507 -33.90719 -32.19593 -30.22232 -29.71066 -27.41108 -25.32614 -22.38394 -21.84006 -20.33869 -18.45619 -18.06329 -17.26619 -17.05236 -16.26712 -15.57648 -14.57021 -14.44618 -14.26562 -13.76656 -13.61637 -13.55205 -13.09712 -12.81990 -12.45333 -11.84230 -11.57696 -11.52039 -11.05422 -10.76387 -10.63122 -10.44064 -10.36818 -9.73496 -9.60416 -9.23440 -8.71798 -8.21460 -6.95028 -6.44902 -4.03116 2.06438 2.19977 2.51310 2.67875 2.87092 3.12528 3.13894 3.19131 3.47967 3.96510 4.18421 4.54945 4.83359 5.07716 5.09273 5.14861 5.32845 5.54494 5.76703 5.80619 6.13093 6.20799 6.27406 6.80366 6.83752 6.97326 7.15073 7.21699 7.40139 7.49916 7.68837 7.77650 7.99573 8.32743 9.00433 9.70841 10.73124 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.058989 B = 0.004117 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.548906 B = 6800.074728 C = 7075.141815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.180 4.180 3 C -0.026 4.026 4 C 0.506 3.494 5 O -0.518 6.518 6 N -0.660 5.660 7 C 0.032 3.968 8 C -0.089 4.089 9 C -0.221 4.221 10 C 0.148 3.852 11 O -0.177 6.177 12 C -0.392 4.392 13 H 0.093 0.907 14 C 0.038 3.962 15 N -0.861 5.861 16 Si 0.942 3.058 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.179 4.179 21 C -0.067 4.067 22 H 0.219 0.781 23 H 0.116 0.884 24 H 0.115 0.885 25 H 0.403 0.597 26 H 0.111 0.889 27 H 0.132 0.868 28 H 0.270 0.730 29 H 0.121 0.879 30 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.009 8.644 -15.320 18.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C -0.066 4.066 4 C 0.292 3.708 5 O -0.392 6.392 6 N -0.305 5.305 7 C -0.060 4.060 8 C -0.109 4.109 9 C -0.240 4.240 10 C 0.094 3.906 11 O -0.080 6.080 12 C -0.468 4.468 13 H 0.110 0.890 14 C -0.166 4.166 15 N -0.496 5.496 16 Si 0.766 3.234 17 H -0.191 1.191 18 H -0.201 1.201 19 H -0.202 1.202 20 C -0.199 4.199 21 C -0.087 4.087 22 H 0.236 0.764 23 H 0.134 0.866 24 H 0.133 0.867 25 H 0.238 0.762 26 H 0.129 0.871 27 H 0.149 0.851 28 H 0.080 0.920 29 H 0.139 0.861 30 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.638 7.970 -14.418 17.114 hybrid contribution 0.963 0.666 0.078 1.174 sum -3.675 8.636 -14.340 17.138 Atomic orbital electron populations 1.24818 0.95847 0.99980 0.99575 1.22026 0.93535 1.01223 1.01235 1.18588 0.87106 1.02672 0.98190 1.20401 0.82373 0.80945 0.87073 1.90737 1.55135 1.46937 1.46438 1.43157 1.06643 1.59299 1.21397 1.17253 0.98666 0.98452 0.91649 1.20482 0.95923 0.98975 0.95499 1.20977 1.03466 1.00948 0.98656 1.19423 0.92087 0.91085 0.88025 1.83992 1.43514 1.48191 1.32287 1.21369 1.04658 1.16959 1.03823 0.88996 1.25296 0.99235 0.96379 0.95669 1.70056 1.39196 1.23084 1.17300 0.85641 0.79719 0.78790 0.79217 1.19107 1.20147 1.20155 1.20157 0.97006 1.04262 0.98506 1.20749 0.99044 0.93359 0.95555 0.76438 0.86641 0.86698 0.76241 0.87095 0.85069 0.92047 0.86113 0.85350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.01 19.25 29.55 0.57 -1.44 16 2 C -0.18 -2.12 12.58 -37.12 -0.47 -2.59 16 3 C -0.03 -0.24 6.19 -30.67 -0.19 -0.43 16 4 C 0.51 7.00 7.66 -10.98 -0.08 6.92 16 5 O -0.52 -9.72 13.47 5.55 0.07 -9.65 16 6 N -0.66 -8.59 5.34 -9.82 -0.05 -8.64 16 7 C 0.03 0.56 6.30 -83.63 -0.53 0.04 16 8 C -0.09 -1.57 9.96 -39.42 -0.39 -1.97 16 9 C -0.22 -4.72 9.16 -39.42 -0.36 -5.09 16 10 C 0.15 3.62 6.65 -39.09 -0.26 3.36 16 11 O -0.18 -5.07 9.75 0.00 0.00 -5.07 16 12 C -0.39 -10.93 9.48 30.88 0.29 -10.64 16 13 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 14 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 15 N -0.86 -25.36 13.67 55.48 0.76 -24.60 16 16 Si 0.94 20.43 29.55 -169.99 -5.02 15.41 16 17 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 18 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 20 C -0.18 -4.00 9.98 -39.42 -0.39 -4.40 16 21 C -0.07 -1.34 8.69 -39.41 -0.34 -1.69 16 22 H 0.22 1.56 7.80 -54.10 -0.42 1.14 16 23 H 0.12 0.73 8.14 -51.92 -0.42 0.30 16 24 H 0.12 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.40 3.47 8.82 -40.82 -0.36 3.11 16 26 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 27 H 0.13 2.77 5.63 -52.49 -0.30 2.48 16 28 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.12 2.62 8.06 -52.48 -0.42 2.20 16 30 H 0.13 2.54 6.23 -52.48 -0.33 2.21 16 LS Contribution 278.89 15.07 4.20 4.20 Total: -1.00 -34.73 278.89 -4.79 -39.52 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -2.50 Total: 5.78 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -2.25 Total: -16.95 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.71 Total: -33.25 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.07 Total: -14.72 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -34.73 -4.79 -39.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692867945.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.044 kcal (2) G-P(sol) polarization free energy of solvation -34.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds