Wall clock time and date at job start Mon Mar 30 2020 03:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.50702 * 109.46790 * 158.24643 * 3 2 1 5 5 O 1.21291 * 119.99858 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00273 * 179.97438 * 4 3 2 7 7 C 1.39924 * 120.00116 * 174.78254 * 6 4 3 8 8 C 1.38964 * 120.03638 * 326.32491 * 7 6 4 9 9 C 1.38159 * 120.06436 * 180.02562 * 8 7 6 10 10 C 1.38172 * 120.14002 * 359.70620 * 9 8 7 11 11 C 1.38908 * 120.06877 * 0.55025 * 10 9 8 12 12 O 1.35746 * 120.03042 * 179.74752 * 11 10 9 13 13 C 1.34836 * 117.00011 * 173.82383 * 12 11 10 14 14 H 1.07998 * 119.99642 * 354.59618 * 13 12 11 15 15 C 1.38650 * 119.99834 * 174.59571 * 13 12 11 16 16 N 1.31566 * 119.99661 * 179.97438 * 15 13 12 17 17 Si 1.86792 * 120.00338 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47313 * 89.99847 * 17 15 13 19 19 H 1.48507 * 109.47288 * 209.99745 * 17 15 13 20 20 H 1.48499 * 109.47161 * 329.99918 * 17 15 13 21 21 C 1.38713 * 120.03408 * 146.34830 * 7 6 4 22 22 H 4.43218 * 5.59308 * 180.02562 * 4 1 2 23 23 H 1.08990 * 109.47936 * 38.24855 * 3 2 1 24 24 H 1.08993 * 109.47279 * 278.24064 * 3 2 1 25 25 H 0.97000 * 119.99916 * 354.78962 * 6 4 3 26 26 H 1.08001 * 119.96626 * 0.02562 * 8 7 6 27 27 H 1.08005 * 119.93078 * 179.97438 * 9 8 7 28 28 H 1.08002 * 119.96324 * 180.29063 * 10 9 8 29 29 H 0.96992 * 119.99899 * 180.02562 * 16 15 13 30 30 H 1.07998 * 120.07051 * 359.97438 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 6 3.1476 1.3206 -0.5266 5 8 2.3590 2.1762 -0.8687 6 7 4.4726 1.5502 -0.6174 7 6 4.9393 2.7303 -1.2069 8 6 4.2392 3.3058 -2.2603 9 6 4.6998 4.4707 -2.8431 10 6 5.8540 5.0704 -2.3769 11 6 6.5612 4.4971 -1.3277 12 8 7.6978 5.0842 -0.8737 13 6 8.2653 4.5500 0.2266 14 1 7.7692 3.7498 0.7556 15 6 9.4857 5.0281 0.6788 16 7 10.0392 4.5071 1.7527 17 14 10.3441 6.4116 -0.2367 18 1 9.9079 7.7180 0.3185 19 1 11.8142 6.2726 -0.0785 20 1 9.9928 6.3442 -1.6780 21 6 6.1016 3.3267 -0.7406 22 1 -1.0502 -0.0003 0.0003 23 1 3.0097 -0.8061 -0.6361 24 1 3.0093 -0.1465 1.0170 25 1 5.1026 0.8974 -0.2743 26 1 3.3341 2.8419 -2.6238 27 1 4.1542 4.9159 -3.6620 28 1 6.2089 5.9835 -2.8315 29 1 10.8927 4.8418 2.0692 30 1 6.6475 2.8814 0.0780 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710318545.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:00 Heat of formation + Delta-G solvation = 22.303351 kcal Electronic energy + Delta-G solvation = -16317.110153 eV Core-core repulsion = 13466.157153 eV Total energy + Delta-G solvation = -2850.953001 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.084 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.28043 -38.84333 -36.66402 -34.32760 -33.93445 -32.37805 -30.13831 -29.24487 -28.15119 -25.23794 -22.58409 -21.81554 -20.18633 -18.60276 -17.94563 -17.63801 -16.96804 -15.70829 -15.69812 -15.12586 -14.61842 -14.08886 -13.93443 -13.81177 -13.61928 -13.11097 -13.06815 -12.31245 -12.16501 -11.73783 -11.25099 -10.99545 -10.73407 -10.66618 -10.36800 -10.31119 -9.96786 -9.60062 -9.50806 -8.87077 -7.84035 -7.32755 -6.44822 -4.12186 1.84044 2.24093 2.49659 2.65907 2.83189 3.21641 3.24351 3.38713 3.41202 4.17634 4.21786 4.46875 4.76728 4.86181 5.05700 5.10502 5.16000 5.59157 5.78844 5.88821 5.94225 6.13360 6.16819 6.44927 6.84522 6.88644 7.15819 7.17415 7.47522 7.53690 7.66196 7.74417 7.99468 8.22557 8.90638 9.52816 10.62865 Molecular weight = 245.08amu Principal moments of inertia in cm(-1) A = 0.037436 B = 0.004974 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.769138 B = 5628.287507 C = 6256.749991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.179 4.179 3 C -0.028 4.028 4 C 0.512 3.488 5 O -0.512 6.512 6 N -0.669 5.669 7 C 0.179 3.821 8 C -0.199 4.199 9 C -0.064 4.064 10 C -0.200 4.200 11 C 0.174 3.826 12 O -0.215 6.215 13 C -0.390 4.390 14 H 0.105 0.895 15 C 0.064 3.936 16 N -0.880 5.880 17 Si 0.906 3.094 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.259 1.259 21 C -0.243 4.243 22 H 0.219 0.781 23 H 0.119 0.881 24 H 0.119 0.881 25 H 0.410 0.590 26 H 0.120 0.880 27 H 0.118 0.882 28 H 0.119 0.881 29 H 0.279 0.721 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.823 -8.439 -4.386 14.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C -0.067 4.067 4 C 0.299 3.701 5 O -0.386 6.386 6 N -0.314 5.314 7 C 0.086 3.914 8 C -0.219 4.219 9 C -0.083 4.083 10 C -0.220 4.220 11 C 0.121 3.879 12 O -0.120 6.120 13 C -0.466 4.466 14 H 0.122 0.878 15 C -0.139 4.139 16 N -0.518 5.518 17 Si 0.731 3.269 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.183 1.183 21 C -0.265 4.265 22 H 0.236 0.764 23 H 0.136 0.864 24 H 0.136 0.864 25 H 0.245 0.755 26 H 0.138 0.862 27 H 0.136 0.864 28 H 0.137 0.863 29 H 0.090 0.910 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.086 -7.669 -4.544 14.225 hybrid contribution 0.659 0.079 0.141 0.678 sum -10.427 -7.590 -4.403 13.628 Atomic orbital electron populations 1.24817 0.95822 0.99386 1.00177 1.22005 0.93486 1.01274 1.01178 1.18596 0.87139 0.96470 1.04480 1.20434 0.82105 0.88988 0.78594 1.90752 1.54978 1.45783 1.47073 1.43455 1.07155 1.20892 1.59884 1.17411 0.94357 0.86910 0.92700 1.20606 1.02668 0.99825 0.98839 1.20535 0.94761 0.94646 0.98377 1.20253 0.97921 1.03023 1.00759 1.18812 0.86868 0.90208 0.91991 1.83614 1.33878 1.51939 1.42610 1.20730 1.04479 1.20803 1.00559 0.87793 1.24463 0.95323 0.98222 0.95932 1.69644 1.18360 1.41459 1.22340 0.86174 0.78017 0.81429 0.81264 1.19838 1.20834 1.18290 1.20939 1.00284 0.99207 1.06063 0.76402 0.86362 0.86362 0.75464 0.86206 0.86405 0.86335 0.91043 0.84537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.01 19.25 29.55 0.57 -1.44 16 2 C -0.18 -2.15 12.58 -37.12 -0.47 -2.61 16 3 C -0.03 -0.27 6.19 -30.67 -0.19 -0.46 16 4 C 0.51 7.36 7.55 -10.98 -0.08 7.28 16 5 O -0.51 -9.56 13.73 5.55 0.08 -9.48 16 6 N -0.67 -9.62 5.34 -9.88 -0.05 -9.67 16 7 C 0.18 3.33 6.27 -83.72 -0.52 2.81 16 8 C -0.20 -3.69 8.65 -39.34 -0.34 -4.03 16 9 C -0.06 -1.15 10.03 -39.63 -0.40 -1.55 16 10 C -0.20 -4.00 9.99 -39.36 -0.39 -4.39 16 11 C 0.17 3.99 6.64 -39.13 -0.26 3.73 16 12 O -0.22 -5.61 8.58 0.05 0.00 -5.61 16 13 C -0.39 -10.79 9.90 30.88 0.31 -10.49 16 14 H 0.10 2.92 5.53 -52.49 -0.29 2.63 16 15 C 0.06 1.76 5.49 -17.51 -0.10 1.67 16 16 N -0.88 -24.97 13.96 55.48 0.77 -24.20 16 17 Si 0.91 21.40 28.62 -169.99 -4.86 16.54 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 21 C -0.24 -5.15 9.04 -39.21 -0.35 -5.50 16 22 H 0.22 1.54 7.80 -54.08 -0.42 1.12 16 23 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.12 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.41 4.43 8.82 -40.82 -0.36 4.07 16 26 H 0.12 2.19 6.43 -52.49 -0.34 1.85 16 27 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 28 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 29 H 0.28 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.14 2.94 5.71 -52.49 -0.30 2.64 16 LS Contribution 278.16 15.07 4.19 4.19 Total: -1.00 -33.13 278.16 -4.64 -37.77 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -2.54 Total: 5.45 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -2.23 Total: -14.99 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.72 Total: -33.87 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.08 Total: -15.09 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.86 Total: 16.54 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -33.13 -4.64 -37.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710318545.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.072 kcal (2) G-P(sol) polarization free energy of solvation -33.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds