Wall clock time and date at job start Mon Mar 30 2020 03:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.29150 * 125.95470 * 2 1 4 4 C 1.50702 * 124.46560 * 359.97438 * 3 2 1 5 5 N 1.46499 * 109.46963 * 185.76594 * 4 3 2 6 6 S 1.65599 * 119.99547 * 163.79082 * 5 4 3 7 7 O 1.52204 * 109.47301 * 60.00318 * 6 5 4 8 8 O 1.42100 * 109.47238 * 299.99889 * 6 5 4 9 9 C 1.76207 * 109.46949 * 179.97438 * 6 5 4 10 10 H 1.08000 * 119.99821 * 0.02562 * 9 6 5 11 11 C 1.37875 * 120.00054 * 179.97438 * 9 6 5 12 12 N 1.31514 * 119.99878 * 180.02562 * 11 9 6 13 13 Si 1.86805 * 119.99879 * 0.02562 * 11 9 6 14 14 H 1.48500 * 109.47099 * 269.99944 * 13 11 9 15 15 H 1.48492 * 109.47046 * 29.99892 * 13 11 9 16 16 H 1.48497 * 109.46862 * 149.99672 * 13 11 9 17 17 C 1.46350 * 111.06706 * 179.73146 * 3 2 1 18 18 C 1.33199 * 109.46925 * 0.24094 * 17 3 2 19 19 C 1.46851 * 125.95446 * 180.11677 * 2 1 3 20 20 H 1.09008 * 109.46798 * 84.94498 * 1 2 3 21 21 H 1.08996 * 109.47085 * 204.93931 * 1 2 3 22 22 H 1.08993 * 109.47228 * 324.94258 * 1 2 3 23 23 H 1.09000 * 109.46720 * 65.76488 * 4 3 2 24 24 H 1.09001 * 109.47188 * 305.76708 * 4 3 2 25 25 H 0.96995 * 120.00077 * 343.78820 * 5 4 3 26 26 H 0.96698 * 114.00250 * 59.99435 * 7 6 5 27 27 H 0.97000 * 119.99515 * 180.02562 * 12 11 9 28 28 H 1.07994 * 125.26203 * 180.24070 * 17 3 2 29 29 H 1.07997 * 127.02670 * 180.02562 * 18 17 3 30 30 H 1.08997 * 110.42966 * 61.18372 * 19 2 1 31 31 H 1.08991 * 110.08242 * 299.15262 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2233 1.0454 0.0000 4 6 1.7182 2.4653 -0.0006 5 7 2.8494 3.3859 -0.1392 6 16 2.5855 4.9628 -0.5703 7 8 1.6935 5.6299 0.4670 8 8 1.9496 5.0066 -1.8403 9 6 4.1258 5.8144 -0.6543 10 1 5.0450 5.2904 -0.4379 11 6 4.1576 7.1495 -0.9973 12 7 5.3073 7.7849 -1.0604 13 14 2.5677 8.0556 -1.3722 14 1 2.2655 7.9460 -2.8220 15 1 1.4588 7.4545 -0.5886 16 1 2.7150 9.4867 -1.0040 17 6 3.6376 0.6694 0.0064 18 6 3.7440 -0.6583 0.0052 19 6 2.3272 -1.1887 -0.0024 20 1 -0.3633 0.0906 -1.0238 21 1 -0.3633 -0.9318 0.4333 22 1 -0.3633 0.8412 0.5902 23 1 1.1987 2.6665 0.9363 24 1 1.0308 2.6061 -0.8347 25 1 3.7529 3.0717 0.0216 26 1 2.0653 5.6365 1.3596 27 1 5.3296 8.7242 -1.3014 28 1 4.4667 1.3615 0.0113 29 1 4.6554 -1.2377 0.0092 30 1 2.1520 -1.7839 -0.8986 31 1 2.1433 -1.7863 0.8903 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725655345.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:14 Heat of formation + Delta-G solvation = 38.423924 kcal Electronic energy + Delta-G solvation = -16159.695483 eV Core-core repulsion = 13379.459563 eV Total energy + Delta-G solvation = -2780.235920 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.02945 -37.13124 -35.19848 -34.15964 -33.51668 -31.75950 -27.80566 -26.91501 -25.85166 -24.17966 -20.17587 -19.58403 -18.99518 -17.96915 -17.51934 -16.13861 -15.74183 -15.48433 -14.82365 -14.39524 -14.00678 -13.36894 -13.35649 -13.11068 -12.84086 -12.42230 -12.35267 -12.29338 -11.78072 -11.35735 -11.21789 -11.12017 -10.81720 -10.27531 -10.09617 -9.74111 -9.67011 -9.42900 -8.61609 -7.96398 -7.29423 -5.90716 -3.22161 0.08909 2.70498 2.77989 2.91312 3.26022 3.54138 3.82576 4.04710 4.18433 4.28010 5.12017 5.47747 5.73746 5.75655 5.93279 5.96757 6.06464 6.21261 6.23880 6.29258 6.39597 6.52666 6.78423 6.92366 7.14464 7.57540 7.74675 7.82620 8.14634 8.20665 8.29253 9.02282 9.80178 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.044810 B = 0.006508 C = 0.005938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.706955 B = 4301.590017 C = 4714.155922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.559 5.559 3 C -0.112 4.112 4 C 0.206 3.794 5 N -1.066 6.066 6 S 2.281 3.719 7 O -0.887 6.887 8 O -0.954 6.954 9 C -0.959 4.959 10 H 0.135 0.865 11 C 0.138 3.862 12 N -0.798 5.798 13 Si 0.813 3.187 14 H -0.245 1.245 15 H -0.217 1.217 16 H -0.257 1.257 17 C -0.079 4.079 18 C -0.371 4.371 19 C 0.182 3.818 20 H 0.034 0.966 21 H 0.059 0.941 22 H 0.058 0.942 23 H 0.044 0.956 24 H 0.041 0.959 25 H 0.398 0.602 26 H 0.437 0.563 27 H 0.288 0.712 28 H 0.106 0.894 29 H 0.118 0.882 30 H 0.020 0.980 31 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.532 -5.175 5.819 9.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.278 5.278 3 C -0.249 4.249 4 C 0.082 3.918 5 N -0.820 5.820 6 S 2.428 3.572 7 O -0.740 6.740 8 O -0.942 6.942 9 C -1.094 5.094 10 H 0.152 0.848 11 C -0.085 4.085 12 N -0.425 5.425 13 Si 0.634 3.366 14 H -0.169 1.169 15 H -0.140 1.140 16 H -0.181 1.181 17 C -0.104 4.104 18 C -0.406 4.406 19 C 0.059 3.941 20 H 0.052 0.948 21 H 0.078 0.922 22 H 0.077 0.923 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.234 0.766 26 H 0.301 0.699 27 H 0.099 0.901 28 H 0.124 0.876 29 H 0.136 0.864 30 H 0.038 0.962 31 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -6.948 -3.580 4.880 9.214 hybrid contribution 0.587 0.607 -0.280 0.890 sum -6.361 -2.973 4.600 8.394 Atomic orbital electron populations 1.21217 0.79835 1.01522 1.00260 1.43494 1.03011 1.05711 1.75590 1.20170 0.90039 0.87291 1.27402 1.19513 0.88621 0.86046 0.97646 1.57703 1.14670 1.22478 1.87123 1.27475 0.76802 0.74928 0.77989 1.85992 1.68384 1.86392 1.33268 1.93187 1.76714 1.84934 1.39407 1.29948 1.12069 1.06844 1.60558 0.84777 1.24747 0.97509 0.96336 0.89864 1.69982 1.25774 1.11833 1.34940 0.87700 0.82906 0.82242 0.83775 1.16859 1.14009 1.18136 1.21033 0.92655 0.95059 1.01700 1.22444 0.94558 0.95405 1.28244 1.20249 0.89526 0.86970 0.97307 0.94784 0.92234 0.92310 0.93899 0.94142 0.76594 0.69919 0.90096 0.87640 0.86427 0.96220 0.94960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 1.58 10.83 59.85 0.65 2.23 16 2 N -0.56 -9.87 3.24 -176.45 -0.57 -10.44 16 3 C -0.11 -2.14 6.94 -80.46 -0.56 -2.70 16 4 C 0.21 3.73 5.98 -5.19 -0.03 3.70 16 5 N -1.07 -19.10 6.01 -11.65 -0.07 -19.17 16 6 S 2.28 46.32 4.19 -107.50 -0.45 45.87 16 7 O -0.89 -15.26 11.04 -58.38 -0.64 -15.90 16 8 O -0.95 -24.29 16.59 -58.38 -0.97 -25.26 16 9 C -0.96 -22.11 10.53 30.60 0.32 -21.79 16 10 H 0.13 3.15 8.06 -52.49 -0.42 2.72 16 11 C 0.14 3.37 5.47 -17.82 -0.10 3.28 16 12 N -0.80 -20.15 13.96 55.43 0.77 -19.37 16 13 Si 0.81 17.94 26.30 -169.99 -4.47 13.47 16 14 H -0.24 -5.74 7.11 56.52 0.40 -5.34 16 15 H -0.22 -4.61 5.17 56.52 0.29 -4.32 16 16 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 17 C -0.08 -1.51 9.94 -38.08 -0.38 -1.89 16 18 C -0.37 -6.82 11.30 -35.78 -0.40 -7.23 16 19 C 0.18 3.14 7.46 -4.71 -0.04 3.10 16 20 H 0.03 0.46 8.14 -51.92 -0.42 0.04 16 21 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.06 0.74 7.73 -51.93 -0.40 0.34 16 23 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.40 6.67 6.61 -34.47 -0.23 6.44 16 26 H 0.44 4.77 9.03 67.38 0.61 5.38 16 27 H 0.29 6.60 8.31 -40.82 -0.34 6.26 16 28 H 0.11 1.86 6.70 -52.49 -0.35 1.51 16 29 H 0.12 1.98 8.06 -52.49 -0.42 1.55 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 272.49 15.07 4.11 4.11 Total: -1.00 -31.52 272.49 -5.83 -37.34 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -3.00 Total: 10.65 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: -0.53 Total: -21.30 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: 0.13 Total: -48.98 kcal Atomic # 8 Polarization: -39.55 SS G_CDS: -1.61 Total: -41.16 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -4.47 Total: 13.47 kcal Atomic # 16 Polarization: 46.32 SS G_CDS: -0.45 Total: 45.87 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.52 -5.83 -37.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725655345.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.768 kcal (2) G-P(sol) polarization free energy of solvation -31.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds