Wall clock time and date at job start Mon Mar 30 2020 04:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30534 * 1 3 3 Si 1.86792 * 120.00225 * 2 1 4 4 H 1.48498 * 109.46994 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47345 * 300.00269 * 3 2 1 6 6 H 1.48496 * 109.47062 * 60.00456 * 3 2 1 7 7 C 1.40406 * 119.99459 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99721 * 179.97438 * 7 2 1 9 9 C 1.40493 * 120.00146 * 359.97438 * 7 2 1 10 10 N 1.33803 * 120.85310 * 0.02562 * 9 7 2 11 11 C 1.32125 * 121.47994 * 179.97438 * 10 9 7 12 12 C 1.50706 * 118.48612 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.46854 * 270.01616 * 12 11 10 14 14 C 1.52998 * 117.50179 * 243.74417 * 13 12 11 15 15 C 1.52997 * 117.49604 * 175.08710 * 13 12 11 16 16 N 1.31144 * 123.02740 * 359.97438 * 11 10 9 17 17 N 1.39566 * 120.67619 * 0.02562 * 16 11 10 18 18 C 1.35322 * 135.40952 * 179.97438 * 17 16 11 19 19 N 1.31051 * 107.43250 * 180.02562 * 18 17 16 20 20 N 1.28844 * 110.23709 * 359.97438 * 19 18 17 21 21 C 1.31192 * 109.49346 * 0.02562 * 20 19 18 22 22 H 0.97009 * 119.99729 * 359.97438 * 1 2 3 23 23 H 1.08991 * 109.47176 * 30.02026 * 12 11 10 24 24 H 1.08997 * 109.47149 * 150.02284 * 12 11 10 25 25 H 1.09002 * 115.54615 * 29.42271 * 13 12 11 26 26 H 1.09000 * 117.49768 * 0.02562 * 14 13 12 27 27 H 1.09002 * 117.49558 * 145.01925 * 14 13 12 28 28 H 1.09005 * 117.49656 * 214.98478 * 15 13 12 29 29 H 1.08998 * 117.50178 * 0.02562 * 15 13 12 30 30 H 1.08007 * 126.28404 * 359.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2394 1.6176 0.0000 4 1 3.6993 1.3462 -0.0006 5 1 1.8806 2.3964 -1.2124 6 1 1.8807 2.3963 1.2125 7 6 2.0073 -1.2160 -0.0005 8 1 3.0873 -1.2161 -0.0010 9 6 1.3047 -2.4327 -0.0005 10 7 -0.0332 -2.4525 -0.0005 11 6 -0.7064 -3.5894 -0.0010 12 6 -2.2124 -3.5330 -0.0004 13 6 -2.7214 -3.5145 1.4423 14 6 -3.5677 -4.7009 1.9082 15 6 -4.2262 -3.3419 1.6583 16 7 -0.1244 -4.7647 -0.0021 17 7 1.2672 -4.8701 -0.0021 18 6 2.1564 -5.8903 -0.0026 19 7 3.3569 -5.3647 -0.0019 20 7 3.2803 -4.0786 -0.0015 21 6 2.0198 -3.7150 -0.0014 22 1 -0.4850 0.8401 0.0004 23 1 -2.5423 -2.6300 -0.5138 24 1 -2.6090 -4.4086 -0.5143 25 1 -2.0525 -3.0564 2.1709 26 1 -3.7615 -5.4949 1.1870 27 1 -3.4558 -5.0232 2.9435 28 1 -4.5473 -2.7706 2.5293 29 1 -4.8536 -3.2420 0.7727 30 1 1.9200 -6.9442 -0.0027 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074139267.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:01 Heat of formation + Delta-G solvation = 153.187431 kcal Electronic energy + Delta-G solvation = -17067.170647 eV Core-core repulsion = 14286.478708 eV Total energy + Delta-G solvation = -2780.691939 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.097 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.91862 -38.08143 -36.74361 -34.70549 -32.55999 -31.45390 -29.27312 -27.72212 -27.30630 -23.14463 -22.23469 -22.03115 -20.83908 -20.16248 -18.29489 -17.84655 -16.11766 -15.70162 -15.32347 -15.05066 -14.38443 -14.08244 -13.43280 -12.85084 -12.30609 -12.22399 -11.79234 -11.71639 -11.46457 -11.30068 -11.13352 -10.95704 -10.68356 -10.67464 -10.48005 -9.97035 -9.57116 -9.55316 -9.42912 -8.76885 -7.95270 -7.75928 -7.03874 -5.44803 1.94072 2.57552 2.80076 2.82471 2.88482 3.19317 3.52582 3.71473 4.07056 4.14267 4.88139 5.06141 5.14921 5.21055 5.24871 5.32208 5.55835 5.77433 5.84221 5.92172 6.10330 6.20720 6.32780 6.36141 6.45554 6.49993 6.64814 6.78802 6.95868 7.39594 7.58266 7.82070 8.11912 8.59366 9.50024 9.53551 9.89257 Molecular weight = 245.10amu Principal moments of inertia in cm(-1) A = 0.015261 B = 0.010297 C = 0.006361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.258051 B = 2718.546570 C = 4400.540967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.646 5.646 2 C 0.047 3.953 3 Si 0.927 3.073 4 H -0.249 1.249 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.301 4.301 8 H 0.112 0.888 9 C 0.293 3.707 10 N -0.575 5.575 11 C 0.338 3.662 12 C 0.001 3.999 13 C -0.127 4.127 14 C -0.182 4.182 15 C -0.180 4.180 16 N -0.454 5.454 17 N -0.278 5.278 18 C 0.148 3.852 19 N -0.308 5.308 20 N -0.276 5.276 21 C 0.106 3.894 22 H 0.289 0.711 23 H 0.094 0.906 24 H 0.073 0.927 25 H 0.103 0.897 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.173 1.037 1.229 6.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.264 5.264 2 C -0.187 4.187 3 Si 0.749 3.251 4 H -0.172 1.172 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.337 4.337 8 H 0.130 0.870 9 C 0.159 3.841 10 N -0.308 5.308 11 C 0.061 3.939 12 C -0.040 4.040 13 C -0.146 4.146 14 C -0.219 4.219 15 C -0.217 4.217 16 N -0.293 5.293 17 N -0.049 5.049 18 C -0.140 4.140 19 N -0.154 5.154 20 N -0.124 5.124 21 C -0.160 4.160 22 H 0.101 0.899 23 H 0.112 0.888 24 H 0.092 0.908 25 H 0.121 0.879 26 H 0.111 0.889 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -5.682 0.870 1.218 5.876 hybrid contribution -0.404 0.292 0.061 0.502 sum -6.087 1.162 1.279 6.327 Atomic orbital electron populations 1.70046 1.07861 1.29953 1.18574 1.26471 0.95365 1.02296 0.94530 0.85890 0.81227 0.78654 0.79373 1.17214 1.18898 1.18911 1.20225 0.96195 0.88477 1.28799 0.86993 1.19205 0.87530 0.86619 0.90772 1.69377 1.04313 1.23898 1.33234 1.23311 0.97063 0.85628 0.87876 1.19638 0.86719 1.02722 0.94911 1.22047 0.92916 1.02000 0.97637 1.23021 1.05089 0.91822 1.01924 1.22945 0.95710 1.00076 1.02998 1.76052 0.83866 1.24669 1.44742 1.47514 1.06371 1.06226 1.44764 1.25704 0.83931 0.95293 1.09033 1.74418 1.18769 1.01845 1.20318 1.74183 1.14826 1.04055 1.19304 1.25335 0.89500 0.92903 1.08290 0.89888 0.88797 0.90806 0.87877 0.88865 0.89445 0.89177 0.88909 0.77368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.65 -14.35 11.52 55.57 0.64 -13.71 16 2 C 0.05 1.01 5.50 -17.29 -0.10 0.91 16 3 Si 0.93 15.61 29.56 -169.99 -5.03 10.59 16 4 H -0.25 -4.20 7.11 56.52 0.40 -3.80 16 5 H -0.26 -4.35 7.11 56.52 0.40 -3.95 16 6 H -0.26 -4.36 7.11 56.52 0.40 -3.96 16 7 C -0.30 -7.24 9.21 -37.92 -0.35 -7.59 16 8 H 0.11 2.57 7.85 -52.48 -0.41 2.16 16 9 C 0.29 7.70 6.73 -82.69 -0.56 7.15 16 10 N -0.57 -14.69 7.89 -7.46 -0.06 -14.75 16 11 C 0.34 8.00 6.91 -157.46 -1.09 6.91 16 12 C 0.00 0.01 5.89 -27.88 -0.16 -0.15 16 13 C -0.13 -2.13 5.72 -90.62 -0.52 -2.64 16 14 C -0.18 -2.55 10.18 -26.70 -0.27 -2.82 16 15 C -0.18 -2.38 10.25 -26.70 -0.27 -2.65 16 16 N -0.45 -11.13 11.83 32.30 0.38 -10.75 16 17 N -0.28 -7.03 4.13 -11.78 -0.05 -7.08 16 18 C 0.15 3.32 13.19 -89.66 -1.18 2.13 16 19 N -0.31 -7.47 12.21 29.75 0.36 -7.11 16 20 N -0.28 -7.24 12.26 32.40 0.40 -6.85 16 21 C 0.11 2.83 8.03 -154.00 -1.24 1.59 16 22 H 0.29 5.57 8.29 -40.82 -0.34 5.24 16 23 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 24 H 0.07 1.26 7.88 -51.93 -0.41 0.85 16 25 H 0.10 1.97 8.07 -51.93 -0.42 1.55 16 26 H 0.09 1.25 8.03 -51.93 -0.42 0.83 16 27 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.21 3.60 8.06 -52.48 -0.42 3.17 16 LS Contribution 273.08 15.07 4.12 4.12 Total: -1.00 -29.36 273.08 -7.88 -37.23 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -2.90 Total: 5.47 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -5.74 Total: 2.83 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: 1.68 Total: -60.24 kcal Atomic # 14 Polarization: 15.61 SS G_CDS: -5.03 Total: 10.59 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.36 -7.88 -37.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074139267.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.420 kcal (2) G-P(sol) polarization free energy of solvation -29.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds