Wall clock time and date at job start Mon Mar 30 2020 04:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99699 * 2 1 4 4 H 1.48499 * 109.47335 * 264.84519 * 3 2 1 5 5 H 1.48501 * 109.47128 * 24.85165 * 3 2 1 6 6 H 1.48504 * 109.46774 * 144.84691 * 3 2 1 7 7 C 1.37878 * 120.00361 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99626 * 4.82162 * 7 2 1 9 9 C 1.50698 * 120.00001 * 184.81741 * 7 2 1 10 10 H 1.09000 * 109.26691 * 335.63370 * 9 7 2 11 11 N 1.46617 * 109.27091 * 95.14630 * 9 7 2 12 12 C 1.47165 * 110.26566 * 172.86621 * 11 9 7 13 13 C 1.52903 * 108.47062 * 288.67440 * 12 11 9 14 14 C 1.50676 * 109.95561 * 50.29235 * 13 12 11 15 15 C 1.38777 * 118.51744 * 163.38363 * 14 13 12 16 16 C 1.37512 * 120.32131 * 179.77957 * 15 14 13 17 17 C 1.38926 * 120.59168 * 0.26878 * 16 15 14 18 18 C 1.39035 * 118.75555 * 359.75775 * 17 16 15 19 19 C 1.37889 * 121.76837 * 343.31161 * 14 13 12 20 20 O 1.36151 * 111.21123 * 179.38995 * 17 16 15 21 21 C 1.43763 * 109.27486 * 18.81627 * 20 17 16 22 22 C 1.51635 * 132.35647 * 180.57113 * 16 15 14 23 23 H 0.96996 * 120.00290 * 0.02562 * 1 2 3 24 24 H 1.00901 * 110.99540 * 296.29655 * 11 9 7 25 25 H 1.09001 * 109.63164 * 168.98000 * 12 11 9 26 26 H 1.09000 * 109.63718 * 48.37413 * 12 11 9 27 27 H 1.09005 * 109.38744 * 170.43581 * 13 12 11 28 28 H 1.09000 * 109.39340 * 290.14152 * 13 12 11 29 29 H 1.07999 * 119.83681 * 359.77378 * 15 14 13 30 30 H 1.07995 * 119.66739 * 180.02562 * 18 17 16 31 31 H 1.08998 * 110.74720 * 90.66733 * 21 20 17 32 32 H 1.08996 * 110.74677 * 214.01272 * 21 20 17 33 33 H 1.08999 * 110.94549 * 46.03522 * 22 16 15 34 34 H 1.09003 * 110.97088 * 282.35384 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6055 1.9837 -1.3944 5 1 1.3963 2.6817 0.5884 6 1 3.4879 1.4741 0.8061 7 6 2.0046 -1.1940 -0.0005 8 1 1.4674 -2.1276 -0.0796 9 6 3.5075 -1.1963 0.1091 10 1 3.8956 -0.2423 -0.2480 11 7 3.8901 -1.3795 1.5125 12 6 5.3469 -1.5555 1.6250 13 6 5.7133 -2.9306 1.0658 14 6 5.0938 -3.1139 -0.2955 15 6 5.5787 -4.1248 -1.1134 16 6 5.0375 -4.3279 -2.3611 17 6 4.0036 -3.5229 -2.8229 18 6 3.5235 -2.5119 -1.9980 19 6 4.0664 -2.3088 -0.7399 20 8 3.6242 -3.8815 -4.0803 21 6 4.0860 -5.2153 -4.3532 22 6 5.3394 -5.3346 -3.4541 23 1 -0.4850 0.8400 -0.0004 24 1 3.5747 -0.6051 2.0773 25 1 5.6433 -1.4950 2.6722 26 1 5.8549 -0.7798 1.0521 27 1 6.7973 -3.0108 0.9838 28 1 5.3444 -3.7049 1.7384 29 1 6.3851 -4.7549 -0.7683 30 1 2.7199 -1.8778 -2.3420 31 1 3.3339 -5.9505 -4.0667 32 1 4.3530 -5.3240 -5.4043 33 1 5.4299 -6.3402 -3.0435 34 1 6.2398 -5.0571 -4.0022 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075777394.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:11 Heat of formation + Delta-G solvation = -5.187540 kcal Electronic energy + Delta-G solvation = -17693.832081 eV Core-core repulsion = 14977.520080 eV Total energy + Delta-G solvation = -2716.312001 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.66967 -38.42454 -35.11003 -33.16185 -32.13888 -31.19802 -29.12630 -28.00215 -25.75585 -23.52157 -22.31287 -21.52303 -20.97376 -18.94278 -17.03712 -16.50843 -16.29172 -15.71127 -15.48754 -14.42995 -14.19931 -13.76786 -13.25304 -13.12361 -12.93625 -12.83337 -12.52929 -12.23905 -12.17685 -11.56327 -11.47746 -11.40276 -10.98631 -10.66818 -10.38845 -10.23023 -9.93086 -9.71850 -9.37216 -8.71652 -8.11163 -7.46891 -7.32728 -6.17161 -4.18625 1.90452 1.97324 3.18323 3.26142 3.29083 3.65586 4.27111 4.29566 4.68001 4.82730 4.91335 5.13118 5.30223 5.35588 5.46604 5.53336 5.58149 5.75194 5.83598 5.91197 5.97811 6.00370 6.14677 6.29064 6.36938 6.46510 6.59000 6.69072 6.95515 6.99092 7.05509 7.22660 7.62442 7.77698 8.07667 8.35750 8.50398 8.94175 9.43060 10.95316 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.023574 B = 0.008615 C = 0.006806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.486768 B = 3249.214778 C = 4113.204983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.076 3.924 3 Si 0.874 3.126 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.493 4.493 8 H 0.081 0.919 9 C 0.213 3.787 10 H 0.017 0.983 11 N -0.676 5.676 12 C 0.045 3.955 13 C -0.062 4.062 14 C -0.111 4.111 15 C -0.081 4.081 16 C -0.194 4.194 17 C 0.087 3.913 18 C -0.109 4.109 19 C -0.001 4.001 20 O -0.308 6.308 21 C 0.052 3.948 22 C -0.103 4.103 23 H 0.266 0.734 24 H 0.337 0.663 25 H 0.064 0.936 26 H 0.021 0.979 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.138 0.862 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.985 -7.151 -3.483 14.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.128 4.128 3 Si 0.702 3.298 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.532 4.532 8 H 0.099 0.901 9 C 0.106 3.894 10 H 0.035 0.965 11 N -0.309 5.309 12 C -0.085 4.085 13 C -0.100 4.100 14 C -0.112 4.112 15 C -0.099 4.099 16 C -0.195 4.195 17 C 0.043 3.957 18 C -0.128 4.128 19 C -0.002 4.002 20 O -0.223 6.223 21 C -0.023 4.023 22 C -0.141 4.141 23 H 0.076 0.924 24 H 0.156 0.844 25 H 0.083 0.917 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.131 0.869 30 H 0.156 0.844 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.101 0.899 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.541 -7.588 -3.648 14.286 hybrid contribution 0.762 1.580 -0.164 1.762 sum 12.303 -6.007 -3.812 14.212 Atomic orbital electron populations 1.69881 1.06135 1.27115 1.49303 1.25093 0.94781 0.98671 0.94257 0.86920 0.79809 0.84189 0.78918 1.19943 1.21135 1.19721 1.20804 0.87619 0.94921 1.49882 0.90073 1.18499 0.96406 0.90175 0.84298 0.96542 1.61279 1.09075 1.48754 1.11765 1.21985 0.91668 0.95640 0.99245 1.20355 0.98151 0.98222 0.93253 1.19495 0.98195 0.97055 0.96423 1.20024 0.99777 0.97908 0.92204 1.20497 1.00430 1.01633 0.96921 1.19484 0.94245 0.97181 0.84785 1.20394 1.01288 0.98673 0.92429 1.19737 0.91754 0.95803 0.92873 1.86799 1.76215 1.30964 1.28319 1.23723 0.94962 0.83370 1.00284 1.21667 0.98612 0.98950 0.94825 0.92367 0.84414 0.91706 0.96072 0.91914 0.90705 0.86863 0.84382 0.91010 0.88330 0.89852 0.90000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 2 C 0.08 2.10 5.47 -17.82 -0.10 2.01 16 3 Si 0.87 20.78 26.99 -169.99 -4.59 16.19 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.13 6.81 56.52 0.38 -5.74 16 7 C -0.49 -13.56 7.83 -34.44 -0.27 -13.83 16 8 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 9 C 0.21 5.06 2.15 -70.18 -0.15 4.91 16 10 H 0.02 0.42 5.24 -51.93 -0.27 0.15 16 11 N -0.68 -14.56 6.46 -109.25 -0.71 -15.27 16 12 C 0.04 0.78 6.59 -3.73 -0.02 0.76 16 13 C -0.06 -1.02 5.95 -27.94 -0.17 -1.19 16 14 C -0.11 -2.13 5.77 -104.56 -0.60 -2.73 16 15 C -0.08 -1.37 9.64 -39.65 -0.38 -1.75 16 16 C -0.19 -3.32 6.27 -104.17 -0.65 -3.97 16 17 C 0.09 1.73 7.04 -39.03 -0.27 1.45 16 18 C -0.11 -2.42 9.09 -39.18 -0.36 -2.77 16 19 C 0.00 -0.02 5.46 -104.65 -0.57 -0.59 16 20 O -0.31 -5.61 11.10 -20.22 -0.22 -5.83 16 21 C 0.05 0.67 8.01 38.06 0.30 0.97 16 22 C -0.10 -1.31 7.12 -26.52 -0.19 -1.50 16 23 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.34 7.16 8.88 -39.29 -0.35 6.81 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.02 0.37 8.05 -51.93 -0.42 -0.04 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 30 H 0.14 3.27 7.32 -52.49 -0.38 2.89 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 276.82 15.07 4.17 4.17 Total: -1.00 -30.58 276.82 -8.39 -38.96 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -4.38 Total: 5.54 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -3.43 Total: -18.24 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.07 Total: -40.79 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.22 Total: -5.83 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.59 Total: 16.19 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.58 -8.39 -38.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075777394.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.774 kcal (2) G-P(sol) polarization free energy of solvation -30.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds