Wall clock time and date at job start Mon Mar 30 2020 04:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99699 * 2 1 4 4 H 1.48499 * 109.47335 * 264.84519 * 3 2 1 5 5 H 1.48501 * 109.47128 * 24.85165 * 3 2 1 6 6 H 1.48504 * 109.46774 * 144.84691 * 3 2 1 7 7 C 1.37878 * 120.00361 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99626 * 4.82162 * 7 2 1 9 9 C 1.50698 * 120.00001 * 184.81741 * 7 2 1 10 10 H 1.09000 * 109.26691 * 335.63370 * 9 7 2 11 11 N 1.46617 * 109.27091 * 95.14630 * 9 7 2 12 12 C 1.47165 * 110.26566 * 172.86621 * 11 9 7 13 13 C 1.52903 * 108.47062 * 288.67440 * 12 11 9 14 14 C 1.50676 * 109.95561 * 50.29235 * 13 12 11 15 15 C 1.38777 * 118.51744 * 163.38363 * 14 13 12 16 16 C 1.37512 * 120.32131 * 179.77957 * 15 14 13 17 17 C 1.38926 * 120.59168 * 0.26878 * 16 15 14 18 18 C 1.39035 * 118.75555 * 359.75775 * 17 16 15 19 19 C 1.37889 * 121.76837 * 343.31161 * 14 13 12 20 20 O 1.36151 * 111.21123 * 179.38995 * 17 16 15 21 21 C 1.43763 * 109.27486 * 18.81627 * 20 17 16 22 22 C 1.51635 * 132.35647 * 180.57113 * 16 15 14 23 23 H 0.96996 * 120.00290 * 0.02562 * 1 2 3 24 24 H 1.00901 * 110.99540 * 296.29655 * 11 9 7 25 25 H 1.09001 * 109.63164 * 168.98000 * 12 11 9 26 26 H 1.09000 * 109.63718 * 48.37413 * 12 11 9 27 27 H 1.09005 * 109.38744 * 170.43581 * 13 12 11 28 28 H 1.09000 * 109.39340 * 290.14152 * 13 12 11 29 29 H 1.07999 * 119.83681 * 359.77378 * 15 14 13 30 30 H 1.07995 * 119.66739 * 180.02562 * 18 17 16 31 31 H 1.08998 * 110.74720 * 90.66733 * 21 20 17 32 32 H 1.08996 * 110.74677 * 214.01272 * 21 20 17 33 33 H 1.08999 * 110.94549 * 46.03522 * 22 16 15 34 34 H 1.09003 * 110.97088 * 282.35384 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.6055 1.9837 -1.3944 5 1 1.3963 2.6817 0.5884 6 1 3.4879 1.4741 0.8061 7 6 2.0046 -1.1940 -0.0005 8 1 1.4674 -2.1276 -0.0796 9 6 3.5075 -1.1963 0.1091 10 1 3.8956 -0.2423 -0.2480 11 7 3.8901 -1.3795 1.5125 12 6 5.3469 -1.5555 1.6250 13 6 5.7133 -2.9306 1.0658 14 6 5.0938 -3.1139 -0.2955 15 6 5.5787 -4.1248 -1.1134 16 6 5.0375 -4.3279 -2.3611 17 6 4.0036 -3.5229 -2.8229 18 6 3.5235 -2.5119 -1.9980 19 6 4.0664 -2.3088 -0.7399 20 8 3.6242 -3.8815 -4.0803 21 6 4.0860 -5.2153 -4.3532 22 6 5.3394 -5.3346 -3.4541 23 1 -0.4850 0.8400 -0.0004 24 1 3.5747 -0.6051 2.0773 25 1 5.6433 -1.4950 2.6722 26 1 5.8549 -0.7798 1.0521 27 1 6.7973 -3.0108 0.9838 28 1 5.3444 -3.7049 1.7384 29 1 6.3851 -4.7549 -0.7683 30 1 2.7199 -1.8778 -2.3420 31 1 3.3339 -5.9505 -4.0667 32 1 4.3530 -5.3240 -5.4043 33 1 5.4299 -6.3402 -3.0435 34 1 6.2398 -5.0571 -4.0022 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075777394.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:11 Heat of formation + Delta-G solvation = -27.129086 kcal Electronic energy + Delta-G solvation = -17694.783538 eV Core-core repulsion = 14977.520080 eV Total energy + Delta-G solvation = -2717.263458 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.01668 -39.90456 -36.64425 -34.99767 -33.63057 -32.75990 -30.57709 -29.43974 -27.53460 -24.97419 -23.74522 -22.79818 -22.63067 -20.36989 -19.11059 -17.94583 -17.72798 -17.08539 -16.86739 -16.17181 -15.68120 -15.38854 -14.80795 -14.65791 -14.56236 -14.27550 -14.01045 -13.59990 -13.53363 -12.98209 -12.90560 -12.67242 -12.58884 -12.26290 -12.02202 -11.89374 -11.51647 -11.31973 -11.12946 -10.84177 -9.63673 -9.08937 -8.80796 -8.34246 -6.40087 0.43551 0.49389 1.25701 1.29748 1.38121 2.25599 2.38888 2.81482 2.92859 3.53724 3.66107 3.79059 4.03886 4.07295 4.21359 4.29636 4.39065 4.45989 4.57766 4.62763 4.69041 4.75451 4.86743 4.89687 4.94107 5.04850 5.21907 5.24155 5.36050 5.49680 5.51020 5.70451 5.90822 6.24061 6.34549 6.50161 6.62055 6.76905 7.25220 8.82814 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.023574 B = 0.008615 C = 0.006806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.486768 B = 3249.214778 C = 4113.204983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.019 3.981 3 Si 0.944 3.056 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.248 1.248 7 C -0.493 4.493 8 H 0.026 0.974 9 C 0.221 3.779 10 H 0.008 0.992 11 N -0.690 5.690 12 C 0.042 3.958 13 C -0.060 4.060 14 C -0.118 4.118 15 C -0.073 4.073 16 C -0.186 4.186 17 C 0.071 3.929 18 C -0.144 4.144 19 C -0.037 4.037 20 O -0.336 6.336 21 C 0.040 3.960 22 C -0.094 4.094 23 H 0.268 0.732 24 H 0.336 0.664 25 H 0.098 0.902 26 H 0.022 0.978 27 H 0.104 0.896 28 H 0.081 0.919 29 H 0.159 0.841 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.134 0.866 33 H 0.115 0.885 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.049 -8.655 -3.295 18.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.180 4.180 3 Si 0.768 3.232 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.172 1.172 7 C -0.531 4.531 8 H 0.045 0.955 9 C 0.113 3.887 10 H 0.026 0.974 11 N -0.321 5.321 12 C -0.087 4.087 13 C -0.097 4.097 14 C -0.118 4.118 15 C -0.091 4.091 16 C -0.187 4.187 17 C 0.026 3.974 18 C -0.164 4.164 19 C -0.037 4.037 20 O -0.251 6.251 21 C -0.034 4.034 22 C -0.130 4.130 23 H 0.077 0.923 24 H 0.154 0.846 25 H 0.116 0.884 26 H 0.040 0.960 27 H 0.122 0.878 28 H 0.100 0.900 29 H 0.177 0.823 30 H 0.115 0.885 31 H 0.097 0.903 32 H 0.152 0.848 33 H 0.133 0.867 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 15.631 -9.117 -3.454 18.423 hybrid contribution -0.507 1.865 -0.310 1.957 sum 15.124 -7.252 -3.764 17.190 Atomic orbital electron populations 1.70037 1.08097 1.28203 1.51616 1.25924 0.95531 1.02619 0.93930 0.85800 0.79218 0.79073 0.79158 1.19935 1.20463 1.17232 1.20864 0.90145 0.92851 1.49289 0.95534 1.18228 0.93542 0.90924 0.85958 0.97446 1.61042 1.12475 1.48674 1.09959 1.22182 0.88492 0.96560 1.01502 1.20473 1.00420 0.97450 0.91384 1.19880 0.97129 0.96680 0.98126 1.20471 1.00034 0.97092 0.91462 1.21100 0.98455 1.01290 0.97837 1.19581 0.95335 0.97085 0.85397 1.20227 1.01750 1.00321 0.94079 1.19678 0.94099 0.97159 0.92804 1.86767 1.76901 1.33911 1.27533 1.24179 0.95560 0.80931 1.02685 1.21805 0.99026 0.99167 0.93039 0.92258 0.84636 0.88401 0.95963 0.87754 0.90038 0.82312 0.88511 0.90275 0.84827 0.86661 0.87559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.25 13.96 21.45 0.30 -58.96 16 2 C 0.02 1.09 5.47 84.66 0.46 1.56 16 3 Si 0.94 44.51 26.99 68.60 1.85 46.36 16 4 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.25 -10.66 6.81 99.48 0.68 -9.98 16 7 C -0.49 -29.06 7.83 25.60 0.20 -28.86 16 8 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 9 C 0.22 10.87 2.15 43.47 0.09 10.96 16 10 H 0.01 0.41 5.24 -2.39 -0.01 0.40 16 11 N -0.69 -29.47 6.46 -499.56 -3.23 -32.69 16 12 C 0.04 1.34 6.59 86.22 0.57 1.91 16 13 C -0.06 -1.74 5.95 29.81 0.18 -1.57 16 14 C -0.12 -4.27 5.77 -19.83 -0.11 -4.39 16 15 C -0.07 -2.19 9.64 22.23 0.21 -1.97 16 16 C -0.19 -5.85 6.27 -19.57 -0.12 -5.98 16 17 C 0.07 2.83 7.04 22.63 0.16 2.99 16 18 C -0.14 -6.85 9.09 22.53 0.20 -6.65 16 19 C -0.04 -1.67 5.46 -19.88 -0.11 -1.78 16 20 O -0.34 -12.24 11.10 -95.27 -1.06 -13.30 16 21 C 0.04 0.93 8.01 72.57 0.58 1.51 16 22 C -0.09 -1.93 7.12 30.73 0.22 -1.71 16 23 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 24 H 0.34 14.12 8.88 -89.69 -0.80 13.32 16 25 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.02 0.72 8.05 -2.39 -0.02 0.70 16 27 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 28 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 30 H 0.10 5.18 7.32 -2.91 -0.02 5.16 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -73.65 276.82 0.69 -72.96 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.29 Total: 19.60 kcal Atomic # 6 Polarization: -36.51 SS G_CDS: 2.53 Total: -33.98 kcal Atomic # 7 Polarization: -88.72 SS G_CDS: -2.93 Total: -91.65 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -1.06 Total: -13.30 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.85 Total: 46.36 kcal Total: -73.65 0.69 -72.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075777394.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.829 kcal (2) G-P(sol) polarization free energy of solvation -73.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds