Wall clock time and date at job start Mon Mar 30 2020 04:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38757 * 120.00449 * 2 1 4 4 C 1.38648 * 118.02664 * 180.21976 * 3 2 1 5 5 C 1.39337 * 117.91617 * 359.51027 * 4 3 2 6 6 N 1.39728 * 120.14564 * 180.27472 * 5 4 3 7 7 N 1.39864 * 125.77501 * 334.69369 * 6 5 4 8 8 C 1.30240 * 109.59326 * 179.87332 * 7 6 5 9 9 C 1.41862 * 108.42336 * 0.38486 * 8 7 6 10 10 C 1.41169 * 126.60868 * 179.73748 * 9 8 7 11 11 H 1.08001 * 120.00064 * 186.86658 * 10 9 8 12 12 C 1.39565 * 119.99666 * 6.87081 * 10 9 8 13 13 N 1.31192 * 120.00450 * 10.73726 * 12 10 9 14 14 Si 1.86799 * 119.99984 * 190.74444 * 12 10 9 15 15 H 1.48501 * 109.47210 * 94.02185 * 14 12 10 16 16 H 1.48503 * 109.47392 * 214.02698 * 14 12 10 17 17 H 1.48504 * 109.46849 * 334.02565 * 14 12 10 18 18 C 1.36059 * 125.77498 * 155.00423 * 6 5 4 19 19 N 1.37693 * 126.62517 * 359.97438 * 18 6 5 20 20 N 1.32419 * 119.70973 * 0.25554 * 5 4 3 21 21 N 1.28343 * 122.09039 * 359.97438 * 20 5 4 22 22 H 1.09005 * 109.47120 * 270.27732 * 1 2 3 23 23 H 1.09003 * 109.47109 * 30.27325 * 1 2 3 24 24 H 1.09000 * 109.47314 * 150.27532 * 1 2 3 25 25 H 1.08001 * 120.98763 * 0.02562 * 3 2 1 26 26 H 1.08001 * 121.04223 * 179.78782 * 4 3 2 27 27 H 1.07994 * 125.78310 * 180.16626 * 8 7 6 28 28 H 0.96998 * 119.99772 * 179.97438 * 13 12 10 29 29 H 0.96993 * 120.00122 * 359.97438 * 19 18 6 30 30 H 0.97002 * 120.00213 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2016 0.0000 4 6 3.5865 1.1538 -0.0047 5 6 4.1960 -0.0992 0.0014 6 7 5.5895 -0.2017 0.0028 7 7 6.4805 0.7592 -0.4860 8 6 7.7039 0.3421 -0.3256 9 6 7.6646 -0.9403 0.2797 10 6 8.7735 -1.7448 0.6202 11 1 8.6203 -2.7528 0.9765 12 6 10.0678 -1.2376 0.4964 13 7 10.2523 0.0413 0.2691 14 14 11.5376 -2.3796 0.6541 15 1 11.9497 -2.8451 -0.6945 16 1 12.6639 -1.6517 1.2921 17 1 11.1676 -3.5499 1.4901 18 6 6.3091 -1.2557 0.4746 19 7 5.8062 -2.4088 1.0345 20 7 3.4488 -1.1925 0.0062 21 7 2.1664 -1.1418 0.0060 22 1 -0.3633 0.0050 1.0277 23 1 -0.3633 0.8875 -0.5181 24 1 -0.3634 -0.8924 -0.5095 25 1 1.6771 2.1461 0.0004 26 1 4.1750 2.0593 -0.0083 27 1 8.5966 0.8797 -0.6090 28 1 11.1519 0.3938 0.1835 29 1 4.8476 -2.5269 1.1231 30 1 6.4107 -3.1030 1.3403 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087579953.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:07 Heat of formation + Delta-G solvation = 136.545524 kcal Electronic energy + Delta-G solvation = -16797.982439 eV Core-core repulsion = 14016.568853 eV Total energy + Delta-G solvation = -2781.413586 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.097 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.91294 -39.43187 -34.41130 -33.63385 -33.12437 -32.85560 -30.25863 -28.06577 -27.22543 -25.08978 -23.70972 -22.86153 -20.12181 -19.75607 -17.67893 -17.19858 -16.21160 -15.60277 -15.26059 -15.13756 -14.62212 -14.15165 -13.73848 -13.58974 -13.06171 -12.78534 -12.70393 -12.35007 -11.70504 -11.29905 -11.18439 -10.85911 -10.73129 -10.23362 -10.06961 -9.93134 -9.77577 -9.47085 -9.13050 -8.99882 -7.59988 -6.73825 -6.48397 -3.83370 0.99193 1.07161 2.98208 3.05570 3.20297 3.23523 3.24266 3.95217 4.12990 4.23327 4.39576 4.68853 4.79859 4.86165 5.15633 5.18983 5.47089 5.47815 5.49182 5.78629 5.85989 6.10333 6.29379 6.54912 6.86157 7.03393 7.53118 7.72534 7.91367 8.46759 8.61189 8.72131 8.94579 9.03746 9.12479 9.35974 10.54400 Molecular weight = 245.10amu Principal moments of inertia in cm(-1) A = 0.058339 B = 0.005366 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.841670 B = 5216.356435 C = 5644.868318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.017 3.983 3 C -0.096 4.096 4 C -0.127 4.127 5 C 0.346 3.654 6 N -0.345 5.345 7 N -0.356 5.356 8 C 0.103 3.897 9 C -0.072 4.072 10 C -0.423 4.423 11 H 0.068 0.932 12 C 0.064 3.936 13 N -0.848 5.848 14 Si 0.914 3.086 15 H -0.275 1.275 16 H -0.282 1.282 17 H -0.268 1.268 18 C 0.212 3.788 19 N -0.850 5.850 20 N -0.286 5.286 21 N -0.213 5.213 22 H 0.076 0.924 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.148 0.852 26 H 0.155 0.845 27 H 0.208 0.792 28 H 0.274 0.726 29 H 0.392 0.608 30 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.760 2.092 0.449 11.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C -0.125 4.125 4 C -0.159 4.159 5 C 0.110 3.890 6 N -0.129 5.129 7 N -0.177 5.177 8 C -0.083 4.083 9 C -0.086 4.086 10 C -0.458 4.458 11 H 0.086 0.914 12 C -0.146 4.146 13 N -0.480 5.480 14 Si 0.741 3.259 15 H -0.201 1.201 16 H -0.208 1.208 17 H -0.193 1.193 18 C -0.004 4.004 19 N -0.401 5.401 20 N -0.135 5.135 21 N -0.056 5.056 22 H 0.095 0.905 23 H 0.092 0.908 24 H 0.096 0.904 25 H 0.166 0.834 26 H 0.173 0.827 27 H 0.224 0.776 28 H 0.084 0.916 29 H 0.222 0.778 30 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -12.243 1.573 -0.010 12.343 hybrid contribution 1.234 0.144 0.472 1.329 sum -11.008 1.717 0.462 11.151 Atomic orbital electron populations 1.20519 0.87805 1.03457 1.02982 1.22628 0.98747 0.90620 1.01162 1.22101 0.93629 0.99636 0.97132 1.22039 0.94976 0.98698 1.00221 1.19575 0.84350 0.91543 0.93579 1.44925 1.00297 1.15839 1.51885 1.76950 1.00287 1.12396 1.28107 1.24962 0.93619 0.95641 0.94091 1.17470 0.88385 0.96005 1.06785 1.18399 0.89057 0.98863 1.39512 0.91362 1.25527 0.99844 0.95131 0.94068 1.69577 1.23185 1.12516 1.42763 0.86202 0.80527 0.80475 0.78737 1.20059 1.20772 1.19262 1.18281 0.89744 0.86144 1.06257 1.40800 1.08999 1.18064 1.72200 1.72807 0.99309 1.25144 1.16216 1.72792 1.00022 1.24728 1.08085 0.90547 0.90776 0.90433 0.83407 0.82687 0.77629 0.91563 0.77846 0.76639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.81 10.19 36.00 0.37 -0.44 16 2 C 0.02 0.23 6.87 -82.39 -0.57 -0.33 16 3 C -0.10 -1.26 9.87 -39.24 -0.39 -1.65 16 4 C -0.13 -2.15 9.84 -39.02 -0.38 -2.53 16 5 C 0.35 7.21 7.47 -154.21 -1.15 6.06 16 6 N -0.35 -8.25 3.77 -10.52 -0.04 -8.29 16 7 N -0.36 -8.78 12.02 30.95 0.37 -8.41 16 8 C 0.10 2.68 10.86 -16.84 -0.18 2.50 16 9 C -0.07 -1.93 5.92 -106.53 -0.63 -2.56 16 10 C -0.42 -11.16 9.22 -37.98 -0.35 -11.51 16 11 H 0.07 1.72 7.41 -52.49 -0.39 1.33 16 12 C 0.06 1.61 5.45 -17.33 -0.09 1.51 16 13 N -0.85 -21.72 10.56 55.53 0.59 -21.14 16 14 Si 0.91 19.30 29.57 -169.99 -5.03 14.27 16 15 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 16 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 17 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 18 C 0.21 5.25 7.97 -152.52 -1.22 4.03 16 19 N -0.85 -18.04 8.96 31.81 0.29 -17.76 16 20 N -0.29 -5.78 9.32 31.33 0.29 -5.48 16 21 N -0.21 -3.75 11.42 33.61 0.38 -3.37 16 22 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 26 H 0.16 2.50 7.96 -52.49 -0.42 2.08 16 27 H 0.21 5.31 6.01 -52.49 -0.32 5.00 16 28 H 0.27 6.50 8.30 -40.82 -0.34 6.16 16 29 H 0.39 7.86 6.91 -40.82 -0.28 7.58 16 30 H 0.40 7.89 8.34 -40.82 -0.34 7.55 16 LS Contribution 267.96 15.07 4.04 4.04 Total: -1.00 -29.75 267.96 -6.27 -36.03 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -2.57 Total: 15.03 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -4.59 Total: -4.93 kcal Atomic # 7 Polarization: -66.32 SS G_CDS: 1.88 Total: -64.44 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.03 Total: 14.27 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.75 -6.27 -36.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087579953.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.572 kcal (2) G-P(sol) polarization free energy of solvation -29.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds