Wall clock time and date at job start Mon Mar 30 2020 04:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38757 * 120.00449 * 2 1 4 4 C 1.38648 * 118.02664 * 180.21976 * 3 2 1 5 5 C 1.39337 * 117.91617 * 359.51027 * 4 3 2 6 6 N 1.39728 * 120.14564 * 180.27472 * 5 4 3 7 7 N 1.39864 * 125.77501 * 334.69369 * 6 5 4 8 8 C 1.30240 * 109.59326 * 179.87332 * 7 6 5 9 9 C 1.41862 * 108.42336 * 0.38486 * 8 7 6 10 10 C 1.41169 * 126.60868 * 179.73748 * 9 8 7 11 11 H 1.08001 * 120.00064 * 186.86658 * 10 9 8 12 12 C 1.39565 * 119.99666 * 6.87081 * 10 9 8 13 13 N 1.31192 * 120.00450 * 10.73726 * 12 10 9 14 14 Si 1.86799 * 119.99984 * 190.74444 * 12 10 9 15 15 H 1.48501 * 109.47210 * 94.02185 * 14 12 10 16 16 H 1.48503 * 109.47392 * 214.02698 * 14 12 10 17 17 H 1.48504 * 109.46849 * 334.02565 * 14 12 10 18 18 C 1.36059 * 125.77498 * 155.00423 * 6 5 4 19 19 N 1.37693 * 126.62517 * 359.97438 * 18 6 5 20 20 N 1.32419 * 119.70973 * 0.25554 * 5 4 3 21 21 N 1.28343 * 122.09039 * 359.97438 * 20 5 4 22 22 H 1.09005 * 109.47120 * 270.27732 * 1 2 3 23 23 H 1.09003 * 109.47109 * 30.27325 * 1 2 3 24 24 H 1.09000 * 109.47314 * 150.27532 * 1 2 3 25 25 H 1.08001 * 120.98763 * 0.02562 * 3 2 1 26 26 H 1.08001 * 121.04223 * 179.78782 * 4 3 2 27 27 H 1.07994 * 125.78310 * 180.16626 * 8 7 6 28 28 H 0.96998 * 119.99772 * 179.97438 * 13 12 10 29 29 H 0.96993 * 120.00122 * 359.97438 * 19 18 6 30 30 H 0.97002 * 120.00213 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2016 0.0000 4 6 3.5865 1.1538 -0.0047 5 6 4.1960 -0.0992 0.0014 6 7 5.5895 -0.2017 0.0028 7 7 6.4805 0.7592 -0.4860 8 6 7.7039 0.3421 -0.3256 9 6 7.6646 -0.9403 0.2797 10 6 8.7735 -1.7448 0.6202 11 1 8.6203 -2.7528 0.9765 12 6 10.0678 -1.2376 0.4964 13 7 10.2523 0.0413 0.2691 14 14 11.5376 -2.3796 0.6541 15 1 11.9497 -2.8451 -0.6945 16 1 12.6639 -1.6517 1.2921 17 1 11.1676 -3.5499 1.4901 18 6 6.3091 -1.2557 0.4746 19 7 5.8062 -2.4088 1.0345 20 7 3.4488 -1.1925 0.0062 21 7 2.1664 -1.1418 0.0060 22 1 -0.3633 0.0050 1.0277 23 1 -0.3633 0.8875 -0.5181 24 1 -0.3634 -0.8924 -0.5095 25 1 1.6771 2.1461 0.0004 26 1 4.1750 2.0593 -0.0083 27 1 8.5966 0.8797 -0.6090 28 1 11.1519 0.3938 0.1835 29 1 4.8476 -2.5269 1.1231 30 1 6.4107 -3.1030 1.3403 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087579953.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:06 Heat of formation + Delta-G solvation = 117.220827 kcal Electronic energy + Delta-G solvation = -16798.820421 eV Core-core repulsion = 14016.568853 eV Total energy + Delta-G solvation = -2782.251568 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.097 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.36186 -41.14057 -35.97392 -35.31360 -34.69725 -34.37047 -31.73961 -29.87132 -28.50698 -26.79947 -25.21721 -24.18448 -21.85932 -21.52113 -19.47299 -18.68732 -17.84464 -17.14457 -16.83319 -16.55258 -16.25033 -15.70275 -15.33642 -15.03667 -14.50513 -14.16020 -13.70689 -13.59008 -13.13518 -12.99568 -12.83573 -12.61044 -12.27087 -11.86804 -11.70858 -11.53462 -11.19574 -11.07747 -10.85355 -10.64224 -9.32129 -8.60062 -8.32595 -5.77804 -0.32884 -0.24054 1.30326 1.41108 1.49068 1.54435 1.60823 2.32644 2.38736 2.51411 3.17403 3.28847 3.47497 3.54247 3.64440 3.68685 4.05634 4.49867 4.61570 4.64663 4.83361 4.95046 4.99669 5.13162 5.20695 5.36094 5.65933 5.91901 6.09360 6.53820 6.80062 6.92894 7.17472 7.23305 7.42047 7.70184 8.71704 Molecular weight = 245.10amu Principal moments of inertia in cm(-1) A = 0.058339 B = 0.005366 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.841670 B = 5216.356435 C = 5644.868318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.035 3.965 3 C -0.070 4.070 4 C -0.136 4.136 5 C 0.307 3.693 6 N -0.354 5.354 7 N -0.358 5.358 8 C 0.076 3.924 9 C -0.113 4.113 10 C -0.456 4.456 11 H 0.068 0.932 12 C 0.021 3.979 13 N -0.874 5.874 14 Si 0.984 3.016 15 H -0.273 1.273 16 H -0.276 1.276 17 H -0.264 1.264 18 C 0.221 3.779 19 N -0.836 5.836 20 N -0.307 5.307 21 N -0.244 5.244 22 H 0.098 0.902 23 H 0.110 0.890 24 H 0.078 0.922 25 H 0.206 0.794 26 H 0.159 0.841 27 H 0.199 0.801 28 H 0.278 0.722 29 H 0.399 0.601 30 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.605 2.566 0.701 14.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.098 4.098 4 C -0.167 4.167 5 C 0.071 3.929 6 N -0.140 5.140 7 N -0.181 5.181 8 C -0.109 4.109 9 C -0.128 4.128 10 C -0.491 4.491 11 H 0.087 0.913 12 C -0.185 4.185 13 N -0.508 5.508 14 Si 0.807 3.193 15 H -0.198 1.198 16 H -0.202 1.202 17 H -0.188 1.188 18 C 0.002 3.998 19 N -0.388 5.388 20 N -0.154 5.154 21 N -0.085 5.085 22 H 0.116 0.884 23 H 0.129 0.871 24 H 0.097 0.903 25 H 0.223 0.777 26 H 0.177 0.823 27 H 0.215 0.785 28 H 0.088 0.912 29 H 0.230 0.770 30 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -15.158 2.030 0.244 15.295 hybrid contribution 1.604 0.056 0.399 1.654 sum -13.554 2.086 0.643 13.729 Atomic orbital electron populations 1.20770 0.83713 1.05374 1.04872 1.23582 1.01223 0.89794 0.96752 1.22726 0.91828 1.01752 0.93498 1.22267 0.96886 0.97303 1.00241 1.19935 0.83154 0.93519 0.96290 1.45034 1.01620 1.15206 1.52102 1.76780 1.00001 1.12946 1.28383 1.24773 0.93930 0.96136 0.96076 1.17791 0.89418 0.96883 1.08662 1.18611 0.90037 0.99122 1.41370 0.91333 1.26312 1.02081 0.96537 0.93595 1.69664 1.23868 1.13799 1.43464 0.85147 0.77039 0.78474 0.78609 1.19840 1.20164 1.18819 1.18575 0.89917 0.86724 1.04580 1.40784 1.09560 1.17222 1.71213 1.72719 1.00674 1.25666 1.16327 1.72779 0.98864 1.26861 1.10021 0.88408 0.87141 0.90324 0.77735 0.82315 0.78475 0.91193 0.77021 0.75797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.12 10.19 71.24 0.73 -0.39 16 2 C 0.03 0.82 6.87 42.68 0.29 1.11 16 3 C -0.07 -1.50 9.87 22.49 0.22 -1.28 16 4 C -0.14 -4.32 9.84 22.63 0.22 -4.10 16 5 C 0.31 12.68 7.47 132.86 0.99 13.67 16 6 N -0.35 -17.29 3.77 -187.21 -0.71 -18.00 16 7 N -0.36 -18.32 12.02 -55.99 -0.67 -18.99 16 8 C 0.08 4.14 10.86 85.83 0.93 5.07 16 9 C -0.11 -6.29 5.92 -21.10 -0.12 -6.42 16 10 C -0.46 -25.01 9.22 23.31 0.21 -24.80 16 11 H 0.07 3.58 7.41 -2.91 -0.02 3.55 16 12 C 0.02 1.10 5.45 85.11 0.46 1.56 16 13 N -0.87 -46.58 10.56 21.78 0.23 -46.35 16 14 Si 0.98 40.45 29.57 68.60 2.03 42.47 16 15 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 16 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 17 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 18 C 0.22 11.30 7.97 132.72 1.06 12.35 16 19 N -0.84 -36.10 8.96 -53.28 -0.48 -36.58 16 20 N -0.31 -12.22 9.32 -54.79 -0.51 -12.73 16 21 N -0.24 -8.05 11.42 -47.58 -0.54 -8.59 16 22 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 23 H 0.11 0.69 8.09 -2.39 -0.02 0.67 16 24 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.21 2.10 8.06 -2.91 -0.02 2.08 16 26 H 0.16 4.89 7.96 -2.91 -0.02 4.86 16 27 H 0.20 10.89 6.01 -2.91 -0.02 10.87 16 28 H 0.28 13.62 8.30 -92.71 -0.77 12.85 16 29 H 0.40 16.12 6.91 -92.71 -0.64 15.47 16 30 H 0.41 16.35 8.34 -92.71 -0.77 15.58 16 Total: -1.00 -68.62 267.96 4.14 -64.48 By element: Atomic # 1 Polarization: 37.71 SS G_CDS: -0.21 Total: 37.50 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 5.00 Total: -3.21 kcal Atomic # 7 Polarization: -138.56 SS G_CDS: -2.68 Total: -141.24 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.47 kcal Total: -68.62 4.14 -64.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087579953.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.700 kcal (2) G-P(sol) polarization free energy of solvation -68.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds