Wall clock time and date at job start Mon Mar 30 2020 04:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38253 * 120.00110 * 2 1 4 4 C 1.38219 * 119.99764 * 180.29827 * 3 2 1 5 5 C 1.38252 * 120.00159 * 359.70378 * 4 3 2 6 6 C 1.38209 * 120.00230 * 0.02562 * 5 4 3 7 7 C 1.38222 * 119.99896 * 179.74826 * 2 1 3 8 8 C 1.50700 * 119.99751 * 359.97438 * 7 2 1 9 9 H 1.08997 * 115.56166 * 334.03872 * 8 7 2 10 10 C 1.53077 * 117.50833 * 188.33615 * 8 7 2 11 11 C 1.52999 * 117.49577 * 119.73107 * 8 7 2 12 12 H 1.09002 * 117.50071 * 215.00180 * 11 8 7 13 13 C 1.50702 * 117.49956 * 359.97438 * 11 8 7 14 14 O 1.21293 * 120.00255 * 359.91856 * 13 11 8 15 15 N 1.34777 * 119.99928 * 179.63765 * 13 11 8 16 16 C 1.37101 * 120.00327 * 180.27606 * 15 13 11 17 17 H 1.08001 * 119.99426 * 0.02562 * 16 15 13 18 18 C 1.38942 * 120.00412 * 180.02562 * 16 15 13 19 19 N 1.31414 * 120.00005 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00057 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46646 * 60.00463 * 20 18 16 22 22 H 1.48504 * 109.47036 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47259 * 300.00225 * 20 18 16 24 24 H 1.09004 * 109.47368 * 270.25294 * 1 2 3 25 25 H 1.08996 * 109.47497 * 30.25168 * 1 2 3 26 26 H 1.09005 * 109.47343 * 150.25597 * 1 2 3 27 27 H 1.07997 * 120.00630 * 0.02562 * 3 2 1 28 28 H 1.08004 * 119.99568 * 179.72552 * 4 3 2 29 29 H 1.07998 * 120.00161 * 180.02562 * 5 4 3 30 30 H 1.08001 * 120.00664 * 179.97438 * 6 5 4 31 31 H 1.08996 * 117.49248 * 145.04083 * 10 8 7 32 32 H 1.09000 * 117.53713 * 359.97438 * 10 8 7 33 33 H 0.97000 * 120.00317 * 0.28382 * 15 13 11 34 34 H 0.96996 * 120.00330 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1972 -0.0062 5 6 4.2716 -0.0001 -0.0063 6 6 3.5806 -1.1970 -0.0006 7 6 2.1980 -1.1970 0.0053 8 6 1.4444 -2.5021 0.0116 9 1 0.4438 -2.4653 0.4422 10 6 2.2543 -3.7852 0.2140 11 6 1.6736 -3.4558 -1.1626 12 1 0.8237 -4.0462 -1.5048 13 6 2.6352 -3.0180 -2.2372 14 8 3.1926 -1.9441 -2.1516 15 7 2.8802 -3.8221 -3.2907 16 6 3.7592 -3.4263 -4.2655 17 1 4.2557 -2.4703 -4.1890 18 6 4.0114 -4.2551 -5.3518 19 7 3.4068 -5.4182 -5.4452 20 14 5.2086 -3.7154 -6.6803 21 1 6.5483 -3.4945 -6.0791 22 1 5.3007 -4.7701 -7.7218 23 1 4.7281 -2.4526 -7.2964 24 1 -0.3634 0.0045 1.0277 25 1 -0.3634 0.8877 -0.5177 26 1 -0.3634 -0.8923 -0.5099 27 1 1.6584 2.1326 0.0004 28 1 4.1204 2.1326 -0.0107 29 1 5.3516 -0.0002 -0.0107 30 1 4.1205 -2.1324 -0.0011 31 1 1.7861 -4.5921 0.7777 32 1 3.3322 -3.6858 0.3422 33 1 2.4344 -4.6809 -3.3594 34 1 3.5825 -5.9967 -6.2037 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000151466298.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:33 Heat of formation + Delta-G solvation = 13.354219 kcal Electronic energy + Delta-G solvation = -17429.694655 eV Core-core repulsion = 14714.186685 eV Total energy + Delta-G solvation = -2715.507970 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.116 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.76977 -37.89517 -35.69547 -33.79123 -32.32473 -31.23743 -29.90769 -26.46802 -25.57309 -23.53073 -22.79357 -20.91413 -20.02873 -18.73616 -17.71814 -16.69593 -15.55648 -15.04952 -14.55516 -14.32464 -13.96640 -13.83281 -13.43316 -13.19409 -12.98965 -12.52671 -12.08509 -11.95843 -11.75543 -11.53263 -11.29934 -11.09481 -10.55757 -10.44308 -10.43593 -10.25344 -10.09009 -9.95182 -9.45621 -8.65436 -8.04488 -7.87691 -7.41734 -6.41667 -3.81287 1.93147 2.08609 3.18555 3.25289 3.29857 3.64203 4.15941 4.29934 4.57521 4.81575 5.08875 5.23361 5.30527 5.39556 5.46991 5.50909 5.57186 5.68899 5.72336 5.86896 5.93401 6.03218 6.13024 6.19075 6.20327 6.46201 6.50097 6.64720 6.70831 7.06480 7.14908 7.29707 7.55000 7.65571 8.06806 8.63022 9.18569 9.56893 10.09756 10.75902 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.027134 B = 0.006594 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.660838 B = 4245.572867 C = 4751.977313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.086 4.086 3 C -0.139 4.139 4 C -0.122 4.122 5 C -0.137 4.137 6 C -0.031 4.031 7 C -0.032 4.032 8 C -0.093 4.093 9 H 0.112 0.888 10 C -0.159 4.159 11 C -0.159 4.159 12 H 0.112 0.888 13 C 0.461 3.539 14 O -0.571 6.571 15 N -0.557 5.557 16 C -0.298 4.298 17 H 0.102 0.898 18 C 0.023 3.977 19 N -0.901 5.901 20 Si 0.929 3.071 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.274 1.274 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.392 0.608 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 5.070 10.878 12.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.086 4.086 3 C -0.157 4.157 4 C -0.141 4.141 5 C -0.155 4.155 6 C -0.049 4.049 7 C -0.032 4.032 8 C -0.112 4.112 9 H 0.129 0.871 10 C -0.196 4.196 11 C -0.181 4.181 12 H 0.130 0.870 13 C 0.247 3.753 14 O -0.456 6.456 15 N -0.191 5.191 16 C -0.427 4.427 17 H 0.120 0.880 18 C -0.179 4.179 19 N -0.542 5.542 20 Si 0.756 3.244 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.199 1.199 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.225 0.775 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.722 5.623 10.742 12.683 hybrid contribution 0.319 -0.438 -1.070 1.199 sum -3.403 5.185 9.672 11.490 Atomic orbital electron populations 1.20744 0.92210 1.02461 1.01284 1.19467 0.95229 0.92635 1.01260 1.20696 0.94168 0.96662 1.04142 1.20880 0.94212 0.97413 1.01551 1.20862 0.99107 0.92677 1.02861 1.20664 0.93400 0.97431 0.93423 1.18611 0.93134 0.91885 0.99565 1.21004 0.99412 0.88942 1.01808 0.87050 1.23063 1.00512 0.98122 0.97919 1.22299 1.01984 1.03510 0.90290 0.87035 1.19035 0.86063 0.86308 0.83872 1.90586 1.54314 1.23013 1.77716 1.41876 1.39507 1.18485 1.19257 1.19667 1.19426 1.04339 0.99313 0.87970 1.25256 0.98491 0.95359 0.98790 1.69609 1.43030 1.09809 1.31747 0.85938 0.80419 0.78116 0.79880 1.19915 1.20943 1.19924 0.91988 0.92199 0.91569 0.87256 0.87313 0.87223 0.87023 0.88327 0.88248 0.77482 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 9.33 36.00 0.34 -1.14 16 2 C -0.09 -1.44 5.88 -104.63 -0.62 -2.06 16 3 C -0.14 -2.24 9.70 -39.58 -0.38 -2.63 16 4 C -0.12 -2.01 10.05 -39.58 -0.40 -2.41 16 5 C -0.14 -2.44 10.05 -39.59 -0.40 -2.84 16 6 C -0.03 -0.59 6.18 -39.58 -0.24 -0.84 16 7 C -0.03 -0.58 4.36 -104.62 -0.46 -1.03 16 8 C -0.09 -1.49 5.14 -91.73 -0.47 -1.96 16 9 H 0.11 1.49 6.92 -51.93 -0.36 1.13 16 10 C -0.16 -2.40 9.58 -26.69 -0.26 -2.66 16 11 C -0.16 -2.87 6.19 -91.77 -0.57 -3.44 16 12 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 13 C 0.46 10.84 7.43 -10.98 -0.08 10.76 16 14 O -0.57 -14.82 11.29 5.55 0.06 -14.76 16 15 N -0.56 -14.21 5.29 -10.96 -0.06 -14.26 16 16 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 17 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 18 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 19 N -0.90 -24.69 13.05 55.50 0.72 -23.97 16 20 Si 0.93 21.26 29.55 -169.99 -5.02 16.23 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.74 8.09 -51.93 -0.42 0.32 16 26 H 0.07 0.89 6.66 -51.93 -0.35 0.55 16 27 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 28 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 29 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.11 2.16 5.79 -52.49 -0.30 1.85 16 31 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.10 1.59 6.18 -51.93 -0.32 1.27 16 33 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 34 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 285.14 15.07 4.30 4.30 Total: -1.00 -30.65 285.14 -7.89 -38.54 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -4.12 Total: 12.12 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -3.78 Total: -18.21 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.67 Total: -38.23 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: 0.06 Total: -14.76 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.65 -7.89 -38.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000151466298.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.899 kcal (2) G-P(sol) polarization free energy of solvation -30.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds