Wall clock time and date at job start Mon Mar 30 2020 04:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38496 * 120.01427 * 2 1 4 4 C 1.38358 * 120.42060 * 179.97438 * 3 2 1 5 5 C 1.38076 * 120.19022 * 0.39752 * 4 3 2 6 6 C 1.39341 * 119.61540 * 359.95946 * 5 4 3 7 7 C 1.37715 * 120.01728 * 179.97438 * 2 1 3 8 8 C 1.50614 * 120.83342 * 359.13388 * 7 2 1 9 9 C 1.52752 * 110.40526 * 105.46579 * 8 7 2 10 10 C 1.52320 * 110.74814 * 44.09511 * 9 8 7 11 11 N 1.46069 * 111.23728 * 44.48994 * 10 9 8 12 12 C 1.36871 * 120.04950 * 99.53076 * 11 10 9 13 13 H 1.08004 * 119.99816 * 152.32330 * 12 11 10 14 14 C 1.39044 * 120.00173 * 332.32644 * 12 11 10 15 15 N 1.31365 * 119.99576 * 6.65147 * 14 12 11 16 16 Si 1.86795 * 120.00305 * 186.65713 * 14 12 11 17 17 H 1.48498 * 109.47458 * 59.99461 * 16 14 12 18 18 H 1.48493 * 109.47458 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47044 * 299.99895 * 16 14 12 20 20 C 1.34865 * 119.90338 * 279.55061 * 11 10 9 21 21 O 1.21600 * 120.85420 * 186.11904 * 20 11 10 22 22 H 1.09008 * 109.46812 * 95.75957 * 1 2 3 23 23 H 1.08992 * 109.47223 * 215.75815 * 1 2 3 24 24 H 1.08998 * 109.46892 * 335.76416 * 1 2 3 25 25 H 1.07997 * 119.79070 * 359.95229 * 3 2 1 26 26 H 1.08000 * 119.90474 * 180.38019 * 4 3 2 27 27 H 1.08002 * 120.19439 * 179.97438 * 5 4 3 28 28 H 1.09002 * 109.31182 * 345.17937 * 8 7 2 29 29 H 1.08998 * 109.31652 * 225.75465 * 8 7 2 30 30 H 1.08996 * 109.22054 * 164.42028 * 9 8 7 31 31 H 1.08998 * 109.21992 * 283.81102 * 9 8 7 32 32 H 1.09000 * 109.12199 * 164.94091 * 10 9 8 33 33 H 1.09001 * 109.12512 * 284.09322 * 10 9 8 34 34 H 0.97002 * 119.99407 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1998 1.1992 0.0000 4 6 3.5833 1.2091 0.0005 5 6 4.2861 0.0206 -0.0072 6 6 3.5939 -1.1887 -0.0147 7 6 2.1959 -1.1924 0.0005 8 6 1.4624 -2.5078 0.0207 9 6 1.5184 -3.1699 -1.3547 10 6 2.9214 -3.0788 -1.9408 11 7 3.9347 -3.4067 -0.9411 12 6 4.4942 -4.6556 -0.9165 13 1 5.4943 -4.7918 -0.5321 14 6 3.7750 -5.7490 -1.3863 15 7 2.6136 -5.5682 -1.9729 16 14 4.4603 -7.4748 -1.1832 17 1 4.6516 -7.7648 0.2606 18 1 3.5089 -8.4566 -1.7629 19 1 5.7650 -7.5751 -1.8853 20 6 4.3179 -2.4772 -0.0422 21 8 5.2359 -2.6933 0.7254 22 1 -0.3633 -0.1031 -1.0226 23 1 -0.3633 -0.8339 0.6005 24 1 -0.3633 0.9371 0.4218 25 1 1.6566 2.1327 -0.0008 26 1 4.1151 2.1490 0.0067 27 1 5.3661 0.0281 -0.0072 28 1 0.4219 -2.3360 0.2961 29 1 1.9233 -3.1663 0.7569 30 1 1.2365 -4.2185 -1.2599 31 1 0.8179 -2.6690 -2.0229 32 1 3.0054 -3.7742 -2.7759 33 1 3.0924 -2.0647 -2.3021 34 1 2.1121 -6.3310 -2.3010 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260028627.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:46 Heat of formation + Delta-G solvation = -20.687496 kcal Electronic energy + Delta-G solvation = -18170.390767 eV Core-core repulsion = 15453.406637 eV Total energy + Delta-G solvation = -2716.984129 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.60548 -39.27566 -37.44874 -34.99747 -33.90270 -32.86541 -31.17899 -28.30342 -27.58011 -26.43919 -24.43591 -22.75316 -21.13910 -20.60253 -18.88650 -17.95865 -17.13876 -16.90928 -16.54493 -15.97206 -15.31714 -15.16963 -14.75182 -14.56640 -14.30565 -14.10517 -13.77747 -13.42566 -13.10165 -12.97167 -12.79738 -12.64214 -12.44099 -12.34807 -12.15291 -12.00556 -11.61551 -11.41555 -10.74951 -10.52214 -9.64795 -9.56511 -9.45584 -8.29700 -6.04230 0.18229 0.47145 1.37922 1.40655 1.49715 2.00956 2.25338 2.77793 3.07780 3.10090 3.81672 3.88201 4.02708 4.15045 4.22903 4.42356 4.50044 4.55814 4.64726 4.75586 4.82913 4.93188 4.98406 5.08331 5.17343 5.24716 5.32290 5.39658 5.47089 5.55692 5.57909 5.75838 5.90277 6.09750 6.14200 6.52418 7.10261 7.38148 7.97020 8.63816 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.033999 B = 0.008245 C = 0.007054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.366009 B = 3395.119738 C = 3968.547202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.091 4.091 3 C -0.102 4.102 4 C -0.121 4.121 5 C -0.107 4.107 6 C -0.132 4.132 7 C -0.065 4.065 8 C -0.080 4.080 9 C -0.107 4.107 10 C 0.133 3.867 11 N -0.439 5.439 12 C -0.353 4.353 13 H 0.065 0.935 14 C 0.008 3.992 15 N -0.873 5.873 16 Si 0.990 3.010 17 H -0.283 1.283 18 H -0.261 1.261 19 H -0.271 1.271 20 C 0.472 3.528 21 O -0.640 6.640 22 H 0.082 0.918 23 H 0.068 0.932 24 H 0.090 0.910 25 H 0.164 0.836 26 H 0.157 0.843 27 H 0.111 0.889 28 H 0.101 0.899 29 H 0.025 0.975 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.032 0.968 34 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.889 10.560 -1.103 13.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.091 4.091 3 C -0.120 4.120 4 C -0.138 4.138 5 C -0.126 4.126 6 C -0.135 4.135 7 C -0.066 4.066 8 C -0.117 4.117 9 C -0.145 4.145 10 C 0.011 3.989 11 N -0.154 5.154 12 C -0.480 4.480 13 H 0.083 0.917 14 C -0.194 4.194 15 N -0.511 5.511 16 Si 0.813 3.187 17 H -0.208 1.208 18 H -0.185 1.185 19 H -0.196 1.196 20 C 0.262 3.738 21 O -0.529 6.529 22 H 0.100 0.900 23 H 0.087 0.913 24 H 0.109 0.891 25 H 0.182 0.818 26 H 0.175 0.825 27 H 0.129 0.871 28 H 0.119 0.881 29 H 0.044 0.956 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.050 0.950 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.630 10.275 -0.905 13.449 hybrid contribution 1.079 -1.245 0.205 1.660 sum -7.551 9.031 -0.701 11.793 Atomic orbital electron populations 1.20875 0.88425 1.03904 1.03385 1.20032 0.97895 0.91386 0.99766 1.21564 0.93825 0.98289 0.98321 1.21366 0.94945 0.97305 1.00224 1.21201 0.99748 0.91956 0.99722 1.20065 0.94666 0.93391 1.05355 1.20007 0.91453 0.96436 0.98692 1.20564 1.00417 0.92162 0.98574 1.21787 0.95975 1.02514 0.94226 1.21205 0.88178 0.97175 0.92373 1.43677 1.35216 1.10460 1.26093 1.19570 1.00385 0.84198 1.43890 0.91668 1.26044 0.95626 1.02658 0.95117 1.69915 1.13053 1.32268 1.35823 0.85067 0.78402 0.76971 0.78229 1.20848 1.18541 1.19635 1.18932 0.86158 0.86499 0.82201 1.90523 1.34483 1.82457 1.45470 0.89956 0.91278 0.89083 0.81808 0.82508 0.87110 0.88053 0.95584 0.89434 0.90524 0.88999 0.94967 0.91274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.16 9.44 71.24 0.67 -1.48 16 2 C -0.09 -2.56 5.87 -19.93 -0.12 -2.68 16 3 C -0.10 -2.47 9.67 22.36 0.22 -2.26 16 4 C -0.12 -3.33 10.03 22.26 0.22 -3.11 16 5 C -0.11 -4.10 9.79 22.50 0.22 -3.88 16 6 C -0.13 -5.93 4.70 -20.10 -0.09 -6.03 16 7 C -0.06 -2.46 4.81 -19.64 -0.09 -2.56 16 8 C -0.08 -3.11 5.12 29.74 0.15 -2.95 16 9 C -0.11 -4.34 5.80 30.29 0.18 -4.17 16 10 C 0.13 6.33 4.71 86.24 0.41 6.74 16 11 N -0.44 -24.40 2.49 -640.93 -1.60 -25.99 16 12 C -0.35 -20.86 9.25 84.10 0.78 -20.08 16 13 H 0.07 4.15 7.47 -2.91 -0.02 4.13 16 14 C 0.01 0.43 5.37 84.96 0.46 0.89 16 15 N -0.87 -43.74 7.97 21.68 0.17 -43.57 16 16 Si 0.99 42.76 29.56 68.60 2.03 44.79 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 19 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 20 C 0.47 26.52 6.35 86.77 0.55 27.07 16 21 O -0.64 -41.02 16.91 -4.03 -0.07 -41.08 16 22 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 23 H 0.07 1.39 6.22 -2.39 -0.01 1.37 16 24 H 0.09 1.28 8.05 -2.39 -0.02 1.26 16 25 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 26 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 27 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 28 H 0.10 3.11 5.68 -2.39 -0.01 3.10 16 29 H 0.03 1.21 7.58 -2.39 -0.02 1.20 16 30 H 0.09 3.94 5.91 -2.39 -0.01 3.92 16 31 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.09 4.64 6.04 -2.39 -0.01 4.62 16 33 H 0.03 1.44 7.14 -2.39 -0.02 1.43 16 34 H 0.28 12.87 8.31 -92.71 -0.77 12.10 16 Total: -1.00 -70.93 272.03 5.19 -65.74 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 1.11 Total: 14.61 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 3.55 Total: -14.49 kcal Atomic # 7 Polarization: -68.14 SS G_CDS: -1.42 Total: -69.57 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: -0.07 Total: -41.08 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -70.93 5.19 -65.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260028627.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.053 kcal (2) G-P(sol) polarization free energy of solvation -70.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds