Wall clock time and date at job start Mon Mar 30 2020 04:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86805 * 120.00004 * 2 1 4 4 H 1.48495 * 109.47099 * 274.66170 * 3 2 1 5 5 H 1.48499 * 109.47177 * 34.66625 * 3 2 1 6 6 H 1.48502 * 109.47183 * 154.66464 * 3 2 1 7 7 C 1.39929 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00399 * 162.19558 * 7 2 1 9 9 C 1.41406 * 120.00060 * 342.20526 * 7 2 1 10 10 C 1.40791 * 120.20656 * 335.24632 * 9 7 2 11 11 C 1.37637 * 119.89404 * 179.97438 * 10 9 7 12 12 C 1.38529 * 120.32757 * 359.71981 * 11 10 9 13 13 C 1.39295 * 120.41819 * 0.55546 * 12 11 10 14 14 N 1.39688 * 119.94858 * 179.71623 * 13 12 11 15 15 C 1.47382 * 110.99987 * 359.73199 * 14 13 12 16 16 C 1.54038 * 108.18183 * 170.37737 * 15 14 13 17 17 H 1.08997 * 114.94504 * 153.63518 * 16 15 14 18 18 C 1.54357 * 110.72534 * 287.95099 * 16 15 14 19 19 C 1.54346 * 84.13653 * 79.87631 * 18 16 15 20 20 H 1.09000 * 116.30635 * 146.47979 * 19 18 16 21 21 C 1.47476 * 111.05531 * 123.10381 * 14 13 12 22 22 O 1.44810 * 109.90931 * 19.03743 * 16 15 14 23 23 C 1.38314 * 120.10104 * 359.44934 * 13 12 11 24 24 H 0.97004 * 119.99630 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.04610 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.84033 * 179.97438 * 11 10 9 27 27 H 1.07991 * 119.79105 * 180.27547 * 12 11 10 28 28 H 1.08998 * 109.72942 * 50.69003 * 15 14 13 29 29 H 1.09004 * 109.72945 * 290.06036 * 15 14 13 30 30 H 1.09001 * 114.08042 * 193.67145 * 18 16 15 31 31 H 1.08999 * 114.08203 * 325.90857 * 18 16 15 32 32 H 1.09003 * 109.71850 * 69.99334 * 21 14 13 33 33 H 1.09001 * 109.76195 * 309.35453 * 21 14 13 34 34 H 1.08000 * 120.16561 * 180.29639 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3913 2.1033 -1.3954 5 1 1.4926 2.6222 0.7963 6 1 3.5857 1.4138 0.5991 7 6 2.0080 -1.2118 -0.0005 8 1 3.0492 -1.2341 -0.2865 9 6 1.3517 -2.4073 0.3732 10 6 0.2238 -2.3630 1.2146 11 6 -0.4103 -3.5305 1.5739 12 6 0.0521 -4.7500 1.1070 13 6 1.1703 -4.8099 0.2784 14 7 1.6318 -6.0453 -0.1820 15 6 0.7972 -7.1458 0.3324 16 6 1.2039 -8.4394 -0.3984 17 1 1.0198 -9.3587 0.1575 18 6 0.7161 -8.4160 -1.8627 19 6 1.9565 -7.5275 -2.0955 20 1 2.4482 -7.6283 -3.0631 21 6 1.6790 -6.0776 -1.6556 22 8 2.5154 -8.2794 -0.9912 23 6 1.8210 -3.6474 -0.0936 24 1 -0.4850 0.8401 0.0004 25 1 -0.1432 -1.4142 1.5775 26 1 -1.2753 -3.4955 2.2197 27 1 -0.4547 -5.6604 1.3907 28 1 -0.2541 -6.9305 0.1417 29 1 0.9606 -7.2617 1.4039 30 1 0.7620 -9.3837 -2.3622 31 1 -0.2350 -7.9034 -2.0065 32 1 2.4764 -5.4258 -2.0124 33 1 0.7235 -5.7463 -2.0623 34 1 2.6852 -3.6923 -0.7398 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260152708.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:06 Heat of formation + Delta-G solvation = 17.216186 kcal Electronic energy + Delta-G solvation = -17478.186178 eV Core-core repulsion = 14762.845676 eV Total energy + Delta-G solvation = -2715.340502 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.57996 -39.71045 -36.96844 -35.01716 -32.10639 -31.30303 -30.96112 -29.44983 -27.21390 -25.45912 -24.35449 -22.12262 -21.93754 -19.96801 -19.34095 -17.93357 -17.34320 -17.06453 -16.72967 -16.16416 -15.69404 -15.48940 -15.22819 -14.64279 -14.13576 -14.11160 -13.77247 -13.50101 -13.45294 -13.02122 -12.84891 -12.75105 -12.43293 -12.14219 -11.73977 -11.62770 -11.51825 -11.28142 -11.05306 -10.51564 -10.19393 -9.41996 -8.68038 -8.48270 -6.38189 0.95632 1.05868 1.37613 1.48435 1.54335 2.20206 2.48870 2.70673 3.13012 3.19821 3.64192 3.69349 3.79817 4.08354 4.25817 4.28313 4.43912 4.50377 4.56698 4.63476 4.72021 4.75943 4.97101 5.00470 5.04979 5.06607 5.14089 5.23877 5.32524 5.46584 5.76706 5.89998 6.05921 6.15470 6.29086 6.51307 6.74581 6.93764 7.04070 8.31813 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.042646 B = 0.005597 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.404550 B = 5001.607092 C = 5387.678057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.038 3.962 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.261 1.261 7 C -0.500 4.500 8 H 0.072 0.928 9 C 0.096 3.904 10 C -0.205 4.205 11 C -0.089 4.089 12 C -0.281 4.281 13 C 0.125 3.875 14 N -0.490 5.490 15 C 0.032 3.968 16 C 0.053 3.947 17 H 0.152 0.848 18 C -0.164 4.164 19 C 0.054 3.946 20 H 0.147 0.853 21 C 0.041 3.959 22 O -0.386 6.386 23 C -0.255 4.255 24 H 0.289 0.711 25 H 0.101 0.899 26 H 0.114 0.886 27 H 0.125 0.875 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.125 0.875 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.430 -11.383 -3.210 11.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.177 4.177 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.185 1.185 7 C -0.530 4.530 8 H 0.090 0.910 9 C 0.093 3.907 10 C -0.225 4.225 11 C -0.108 4.108 12 C -0.303 4.303 13 C 0.028 3.972 14 N -0.207 5.207 15 C -0.095 4.095 16 C -0.004 4.004 17 H 0.169 0.831 18 C -0.201 4.201 19 C -0.004 4.004 20 H 0.164 0.836 21 C -0.085 4.085 22 O -0.304 6.304 23 C -0.277 4.277 24 H 0.100 0.900 25 H 0.119 0.881 26 H 0.132 0.868 27 H 0.143 0.857 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.143 0.857 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.865 -11.453 -3.011 11.873 hybrid contribution -0.484 1.294 -0.165 1.391 sum -1.349 -10.159 -3.176 10.729 Atomic orbital electron populations 1.69885 1.08986 1.30596 1.35383 1.26741 0.95487 1.04427 0.91052 0.85206 0.79150 0.75954 0.79474 1.18574 1.18761 1.18496 1.19791 0.98191 0.92553 1.42439 0.91028 1.17820 0.91604 0.92545 0.88691 1.21257 1.00886 0.97178 1.03222 1.20838 0.98580 0.92613 0.98722 1.20811 1.00686 0.97654 1.11108 1.18670 0.92846 0.88613 0.97032 1.59672 1.50203 1.01672 1.09131 1.22957 0.95851 0.89927 1.00755 1.24287 0.82687 0.97783 0.95663 0.83106 1.25081 0.98008 1.01794 0.95251 1.24200 0.94600 0.89044 0.92585 0.83600 1.22821 1.01304 0.98019 0.86354 1.90094 1.28606 1.71739 1.39958 1.20655 1.04892 0.91949 1.10174 0.90049 0.88093 0.86821 0.85742 0.91753 0.89652 0.85664 0.90925 0.90726 0.93178 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.60 10.97 21.82 0.24 -43.36 16 2 C 0.04 1.96 5.14 85.25 0.44 2.40 16 3 Si 0.98 38.86 29.60 68.60 2.03 40.89 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 6 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 7 C -0.50 -27.99 9.05 23.46 0.21 -27.77 16 8 H 0.07 3.91 7.91 -2.91 -0.02 3.89 16 9 C 0.10 5.43 5.57 -21.31 -0.12 5.31 16 10 C -0.21 -11.15 8.69 22.75 0.20 -10.95 16 11 C -0.09 -4.19 10.01 22.20 0.22 -3.97 16 12 C -0.28 -12.40 8.87 22.59 0.20 -12.20 16 13 C 0.12 5.74 5.59 38.16 0.21 5.96 16 14 N -0.49 -18.89 4.58 -688.71 -3.15 -22.05 16 15 C 0.03 0.97 4.40 86.56 0.38 1.35 16 16 C 0.05 1.27 5.96 30.38 0.18 1.46 16 17 H 0.15 2.58 8.14 -2.39 -0.02 2.56 16 18 C -0.16 -3.24 7.61 31.51 0.24 -3.00 16 19 C 0.05 1.37 5.96 30.37 0.18 1.55 16 20 H 0.15 2.88 8.14 -2.39 -0.02 2.86 16 21 C 0.04 1.38 5.26 86.54 0.46 1.84 16 22 O -0.39 -11.65 11.88 -148.98 -1.77 -13.41 16 23 C -0.25 -13.31 9.03 22.86 0.21 -13.10 16 24 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 25 H 0.10 5.68 6.17 -2.91 -0.02 5.67 16 26 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 27 H 0.12 4.63 5.77 -2.92 -0.02 4.61 16 28 H 0.06 1.87 6.66 -2.39 -0.02 1.85 16 29 H 0.09 2.57 7.97 -2.38 -0.02 2.55 16 30 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 1.42 8.00 -2.39 -0.02 1.40 16 32 H 0.07 2.67 7.36 -2.39 -0.02 2.65 16 33 H 0.05 1.69 8.02 -2.39 -0.02 1.67 16 34 H 0.09 4.54 7.36 -2.91 -0.02 4.52 16 Total: -1.00 -64.77 275.50 1.46 -63.31 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 1.10 Total: 25.76 kcal Atomic # 6 Polarization: -54.14 SS G_CDS: 3.01 Total: -51.13 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: -2.91 Total: -65.41 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -1.77 Total: -13.41 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal Total: -64.77 1.46 -63.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260152708.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.529 kcal (2) G-P(sol) polarization free energy of solvation -64.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds