Wall clock time and date at job start Mon Mar 30 2020 03:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30707 * 1 3 3 Si 1.86797 * 119.99925 * 2 1 4 4 H 1.48503 * 109.47023 * 89.99919 * 3 2 1 5 5 H 1.48497 * 109.47289 * 209.99953 * 3 2 1 6 6 H 1.48507 * 109.47207 * 330.00026 * 3 2 1 7 7 C 1.40078 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00191 * 15.73560 * 7 2 1 9 9 C 1.40749 * 120.00342 * 195.73616 * 7 2 1 10 10 C 1.41914 * 120.05130 * 188.63653 * 9 7 2 11 11 C 1.35622 * 119.17193 * 179.76175 * 10 9 7 12 12 O 1.35393 * 120.39332 * 180.24834 * 11 10 9 13 13 N 1.37452 * 119.21227 * 0.51501 * 11 10 9 14 14 N 1.39978 * 132.36430 * 179.76086 * 13 11 10 15 15 C 1.31518 * 109.02695 * 179.97438 * 14 13 11 16 16 C 1.50698 * 125.42406 * 180.02562 * 15 14 13 17 17 C 1.52993 * 117.50075 * 163.72438 * 16 15 14 18 18 C 1.52999 * 117.49644 * 95.06586 * 16 15 14 19 19 C 1.38436 * 109.15458 * 0.02562 * 15 14 13 20 20 C 1.37548 * 120.05813 * 359.73239 * 13 11 10 21 21 N 1.32949 * 120.86053 * 0.02562 * 20 13 11 22 22 H 0.97000 * 119.99819 * 174.79379 * 1 2 3 23 23 H 1.08001 * 120.40968 * 0.02562 * 10 9 7 24 24 H 0.96700 * 114.00288 * 270.26967 * 12 11 10 25 25 H 1.09004 * 115.55254 * 309.40058 * 16 15 14 26 26 H 1.09004 * 117.50135 * 359.97438 * 17 16 15 27 27 H 1.09002 * 117.50513 * 145.02176 * 17 16 15 28 28 H 1.09002 * 117.49808 * 214.98153 * 18 16 15 29 29 H 1.08998 * 117.49852 * 359.97347 * 18 16 15 30 30 H 1.07998 * 126.22969 * 180.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 2.4885 2.0464 1.4001 5 1 3.5386 1.4402 -0.7000 6 1 1.4384 2.6527 -0.7001 7 6 2.0075 -1.2131 -0.0005 8 1 1.4979 -2.1308 -0.2546 9 6 3.3754 -1.2361 0.3300 10 6 4.1291 -2.4256 0.1541 11 6 5.4471 -2.4264 0.4738 12 8 6.1908 -3.5461 0.3112 13 7 6.0178 -1.2787 0.9702 14 7 7.3198 -0.9759 1.3853 15 6 7.3626 0.2769 1.7833 16 6 8.5857 0.9866 2.3041 17 6 8.5462 2.5151 2.3581 18 6 9.4044 1.8081 1.3062 19 6 6.1052 0.8398 1.6475 20 6 5.2558 -0.1451 1.1326 21 7 3.9647 -0.1399 0.8155 22 1 -0.4850 -0.8366 -0.0762 23 1 3.6599 -3.3178 -0.2335 24 1 6.2037 -4.1256 1.0852 25 1 9.1286 0.4690 3.0950 26 1 7.6356 3.0075 2.0165 27 1 9.0633 3.0032 3.1843 28 1 10.4858 1.8311 1.4408 29 1 9.0586 1.8347 0.2729 30 1 5.8303 1.8549 1.8933 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260420430.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:36 Heat of formation + Delta-G solvation = 53.332970 kcal Electronic energy + Delta-G solvation = -17060.454978 eV Core-core repulsion = 14243.140273 eV Total energy + Delta-G solvation = -2817.314704 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.72262 -39.72733 -38.55240 -37.55742 -35.61791 -33.30268 -32.04918 -29.75014 -28.10608 -25.38851 -23.76467 -23.36882 -22.67033 -21.07758 -20.30569 -19.76118 -18.39794 -17.89155 -17.02383 -16.40974 -16.09273 -15.73546 -15.25522 -14.98449 -14.93912 -14.38936 -14.08637 -13.72590 -12.91501 -12.81777 -12.67795 -12.37637 -12.28123 -11.98076 -11.72292 -11.68865 -11.40107 -11.15976 -10.98294 -10.11759 -10.01683 -9.55749 -8.69420 -7.15669 -0.08940 0.35304 1.27872 1.53583 1.59772 1.78717 1.94225 2.34449 2.39690 2.70319 3.02824 3.19696 3.44227 3.66915 4.00574 4.04178 4.16036 4.45579 4.47033 4.61805 4.78303 4.82661 4.84418 5.04083 5.16568 5.18114 5.25606 5.34746 5.56784 5.83173 5.87507 5.97774 6.23385 6.28619 6.95321 7.40228 7.72083 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.023548 B = 0.008632 C = 0.006486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.771538 B = 3242.844286 C = 4315.826650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.035 3.965 3 Si 1.162 2.838 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.311 1.311 7 C -0.436 4.436 8 H 0.105 0.895 9 C 0.249 3.751 10 C -0.238 4.238 11 C 0.343 3.657 12 O -0.473 6.473 13 N -0.382 5.382 14 N -0.377 5.377 15 C 0.153 3.847 16 C -0.100 4.100 17 C -0.149 4.149 18 C -0.156 4.156 19 C -0.369 4.369 20 C 0.332 3.668 21 N -0.629 5.629 22 H 0.298 0.702 23 H 0.177 0.823 24 H 0.421 0.579 25 H 0.133 0.867 26 H 0.090 0.910 27 H 0.131 0.869 28 H 0.128 0.872 29 H 0.076 0.924 30 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.799 -0.288 2.918 10.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.191 4.191 3 Si 0.994 3.006 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.242 1.242 7 C -0.471 4.471 8 H 0.123 0.877 9 C 0.119 3.881 10 C -0.264 4.264 11 C 0.193 3.807 12 O -0.282 6.282 13 N -0.168 5.168 14 N -0.203 5.203 15 C -0.006 4.006 16 C -0.120 4.120 17 C -0.186 4.186 18 C -0.194 4.194 19 C -0.402 4.402 20 C 0.098 3.902 21 N -0.362 5.362 22 H 0.110 0.890 23 H 0.194 0.806 24 H 0.282 0.718 25 H 0.150 0.850 26 H 0.108 0.892 27 H 0.149 0.851 28 H 0.146 0.854 29 H 0.095 0.905 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 9.970 0.991 2.415 10.307 hybrid contribution -0.433 -2.397 0.267 2.450 sum 9.537 -1.406 2.682 10.007 Atomic orbital electron populations 1.70587 1.08277 1.34292 1.26898 1.28169 0.95359 1.07170 0.88376 0.81776 0.71583 0.69314 0.77916 1.21445 1.22149 1.24242 1.20946 0.92796 0.97915 1.35484 0.87737 1.18865 0.94080 0.86712 0.88460 1.21865 0.89784 1.02929 1.11871 1.18359 0.87549 0.80145 0.94666 1.84684 1.71152 1.29282 1.43038 1.47852 1.09752 1.10528 1.48655 1.77392 0.94714 1.17549 1.30600 1.21540 0.94719 0.90793 0.93571 1.20312 0.94392 0.93802 1.03484 1.23129 1.02155 0.91345 1.02001 1.23044 0.99199 1.01987 0.95156 1.20633 0.92284 1.00660 1.26664 1.21080 0.87847 0.86790 0.94482 1.67274 1.06969 1.28649 1.33271 0.89024 0.80554 0.71783 0.84960 0.89170 0.85068 0.85407 0.90487 0.83398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -37.87 13.65 21.84 0.30 -37.58 16 2 C 0.03 1.72 5.51 85.31 0.47 2.19 16 3 Si 1.16 55.19 25.94 68.60 1.78 56.97 16 4 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 5 H -0.29 -14.85 6.54 99.48 0.65 -14.20 16 6 H -0.31 -13.96 7.11 99.48 0.71 -13.26 16 7 C -0.44 -21.07 9.51 23.33 0.22 -20.85 16 8 H 0.10 4.71 8.06 -2.91 -0.02 4.69 16 9 C 0.25 12.17 6.29 40.40 0.25 12.42 16 10 C -0.24 -9.90 9.71 22.57 0.22 -9.68 16 11 C 0.34 14.32 7.84 83.21 0.65 14.97 16 12 O -0.47 -15.78 13.55 -86.85 -1.18 -16.96 16 13 N -0.38 -18.09 3.94 -302.79 -1.19 -19.28 16 14 N -0.38 -17.03 12.66 -47.93 -0.61 -17.63 16 15 C 0.15 6.27 6.79 42.65 0.29 6.56 16 16 C -0.10 -2.92 6.33 -11.54 -0.07 -2.99 16 17 C -0.15 -3.41 10.01 30.61 0.31 -3.11 16 18 C -0.16 -3.73 10.24 30.62 0.31 -3.41 16 19 C -0.37 -16.78 10.23 22.71 0.23 -16.55 16 20 C 0.33 16.77 7.94 133.57 1.06 17.83 16 21 N -0.63 -32.86 5.16 -186.30 -0.96 -33.82 16 22 H 0.30 13.44 8.73 -92.71 -0.81 12.63 16 23 H 0.18 6.03 8.06 -2.91 -0.02 6.01 16 24 H 0.42 9.26 9.06 -74.06 -0.67 8.59 16 25 H 0.13 3.36 8.14 -2.38 -0.02 3.34 16 26 H 0.09 2.31 7.10 -2.38 -0.02 2.29 16 27 H 0.13 2.12 8.14 -2.39 -0.02 2.11 16 28 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.15 6.25 7.33 -2.91 -0.02 6.23 16 Total: -1.00 -63.98 266.91 2.51 -61.47 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 0.42 Total: 9.46 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 3.95 Total: -2.63 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -2.46 Total: -108.31 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -1.18 Total: -16.96 kcal Atomic # 14 Polarization: 55.19 SS G_CDS: 1.78 Total: 56.97 kcal Total: -63.98 2.51 -61.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260420430.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.800 kcal (2) G-P(sol) polarization free energy of solvation -63.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds