Wall clock time and date at job start Mon Mar 30 2020 04:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00107 * 2 1 4 4 H 1.48498 * 109.46929 * 270.00058 * 3 2 1 5 5 H 1.48503 * 109.46710 * 29.99769 * 3 2 1 6 6 H 1.48499 * 109.47160 * 150.00133 * 3 2 1 7 7 C 1.37879 * 120.00310 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00356 * 186.49013 * 7 2 1 9 9 C 1.50701 * 119.99826 * 6.48585 * 7 2 1 10 10 O 1.42897 * 109.39590 * 328.31451 * 9 7 2 11 11 C 1.50543 * 109.39724 * 208.49746 * 9 7 2 12 12 C 1.39149 * 118.18230 * 47.98474 * 11 9 7 13 13 C 1.38019 * 119.43113 * 179.34598 * 12 11 9 14 14 N 1.31898 * 120.44863 * 359.78156 * 13 12 11 15 15 C 1.31557 * 121.64222 * 0.26813 * 14 13 12 16 16 C 1.37703 * 123.20159 * 227.49147 * 11 9 7 17 17 C 1.50373 * 123.57127 * 1.33510 * 16 11 9 18 18 C 1.52771 * 111.17685 * 339.53082 * 17 16 11 19 19 C 1.52762 * 109.39251 * 88.02781 * 9 7 2 20 20 C 1.52632 * 118.32209 * 18.47111 * 19 9 7 21 21 C 1.52718 * 118.15259 * 309.11159 * 19 9 7 22 22 H 0.96994 * 120.00173 * 359.97438 * 1 2 3 23 23 H 0.96700 * 113.99656 * 300.18370 * 10 9 7 24 24 H 1.08001 * 120.28735 * 359.33428 * 12 11 9 25 25 H 1.08000 * 119.77569 * 179.75775 * 13 12 11 26 26 H 1.08002 * 119.37673 * 180.02562 * 15 14 13 27 27 H 1.09000 * 109.13661 * 219.09749 * 17 16 11 28 28 H 1.08999 * 109.09117 * 99.93616 * 17 16 11 29 29 H 1.08996 * 109.72705 * 289.05979 * 18 17 16 30 30 H 1.08992 * 109.76595 * 168.40638 * 18 17 16 31 31 H 1.09004 * 117.50143 * 359.48148 * 20 19 9 32 32 H 1.08996 * 117.50798 * 144.53506 * 20 19 9 33 33 H 1.09000 * 117.50782 * 215.72114 * 21 19 9 34 34 H 1.08995 * 117.51345 * 0.80675 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0794 -1.1971 0.1052 9 6 1.2583 -2.4949 -0.1485 10 8 -0.0361 -2.3695 0.4438 11 6 2.0218 -3.5911 0.5457 12 6 2.4789 -3.3562 1.8388 13 6 3.1700 -4.3483 2.5045 14 7 3.3931 -5.5118 1.9246 15 6 2.9754 -5.7656 0.7032 16 6 2.2793 -4.8138 -0.0329 17 6 1.8539 -5.1796 -1.4281 18 6 0.7162 -4.2818 -1.9114 19 6 1.1052 -2.8259 -1.6320 20 6 2.0254 -2.1263 -2.6287 21 6 0.5440 -1.7478 -2.5566 22 1 -0.4850 0.8400 0.0004 23 1 -0.0181 -2.1530 1.3860 24 1 2.2948 -2.4057 2.3174 25 1 3.5307 -4.1706 3.5068 26 1 3.1780 -6.7312 0.2640 27 1 1.5198 -6.2171 -1.4393 28 1 2.7050 -5.0710 -2.1003 29 1 -0.1998 -4.5274 -1.3743 30 1 0.5643 -4.4232 -2.9814 31 1 2.7472 -1.4124 -2.2320 32 1 2.3572 -2.6986 -3.4950 33 1 -0.0987 -2.0714 -3.3754 34 1 0.2914 -0.7850 -2.1124 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260520474.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:33 Heat of formation + Delta-G solvation = 1.013892 kcal Electronic energy + Delta-G solvation = -18497.110458 eV Core-core repulsion = 15781.067372 eV Total energy + Delta-G solvation = -2716.043086 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 245.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.57190 -39.34127 -36.47737 -34.95334 -33.80965 -32.80266 -30.42987 -28.74564 -26.48008 -24.57723 -23.13886 -22.87296 -22.43840 -19.28553 -18.68512 -17.84854 -17.19013 -16.65997 -16.18701 -16.05138 -15.57432 -15.14963 -14.96237 -14.36399 -14.21009 -13.80564 -13.38150 -13.16304 -12.95366 -12.84561 -12.77799 -12.25841 -12.15549 -12.06586 -11.84298 -11.14746 -10.75413 -10.63415 -10.49774 -10.27508 -10.11039 -9.84708 -9.62219 -7.93209 -6.20541 0.34796 0.54330 1.36833 1.42611 1.47414 2.40922 3.01623 3.18567 3.22984 3.69570 3.84833 3.97171 4.13695 4.23206 4.28660 4.32435 4.42059 4.57212 4.70374 4.80463 4.91529 4.99119 5.00104 5.04231 5.10762 5.20171 5.42528 5.44545 5.48405 5.61052 5.74001 5.86683 5.98506 6.01532 6.22044 6.74322 7.14128 7.39675 7.63304 8.96211 Molecular weight = 245.12amu Principal moments of inertia in cm(-1) A = 0.023479 B = 0.011059 C = 0.008772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.268596 B = 2531.175932 C = 3191.237320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.053 3.947 3 Si 0.923 3.077 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.555 4.555 8 H 0.041 0.959 9 C 0.309 3.691 10 O -0.538 6.538 11 C -0.055 4.055 12 C -0.162 4.162 13 C 0.069 3.931 14 N -0.508 5.508 15 C 0.084 3.916 16 C -0.135 4.135 17 C -0.064 4.064 18 C -0.078 4.078 19 C -0.107 4.107 20 C -0.154 4.154 21 C -0.171 4.171 22 H 0.254 0.746 23 H 0.351 0.649 24 H 0.126 0.874 25 H 0.172 0.828 26 H 0.179 0.821 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.177 -7.783 -2.042 8.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.151 4.151 3 Si 0.749 3.251 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.593 4.593 8 H 0.059 0.941 9 C 0.269 3.731 10 O -0.340 6.340 11 C -0.064 4.064 12 C -0.182 4.182 13 C -0.085 4.085 14 N -0.217 5.217 15 C -0.075 4.075 16 C -0.137 4.137 17 C -0.101 4.101 18 C -0.115 4.115 19 C -0.108 4.108 20 C -0.191 4.191 21 C -0.208 4.208 22 H 0.064 0.936 23 H 0.195 0.805 24 H 0.144 0.856 25 H 0.189 0.811 26 H 0.196 0.804 27 H 0.118 0.882 28 H 0.104 0.896 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.265 -8.434 -2.168 9.300 hybrid contribution 0.095 2.339 0.371 2.370 sum 3.360 -6.095 -1.798 7.189 Atomic orbital electron populations 1.70339 1.06065 1.25826 1.47125 1.25391 0.95178 1.00397 0.94146 0.86134 0.79177 0.81664 0.78087 1.20521 1.21161 1.20004 1.21456 0.92866 0.91572 1.53405 0.94101 1.17014 0.80421 0.88265 0.87399 1.86467 1.28846 1.92568 1.26130 1.21323 0.94991 0.95334 0.94715 1.22265 0.99551 1.00619 0.95741 1.22908 0.96343 0.88659 1.00545 1.67553 1.20422 1.21967 1.11801 1.23212 0.94451 0.99734 0.90126 1.20878 1.00028 0.93878 0.98921 1.20303 0.98597 1.00150 0.91068 1.21095 0.97509 0.92061 1.00883 1.21256 1.04514 0.92724 0.92261 1.22810 0.93274 1.03200 0.99773 1.22835 0.95778 1.01293 1.00927 0.93629 0.80451 0.85635 0.81058 0.80369 0.88221 0.89584 0.93139 0.90131 0.90352 0.88100 0.89905 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -45.55 10.00 21.45 0.21 -45.34 16 2 C 0.05 2.70 4.32 84.66 0.37 3.07 16 3 Si 0.92 41.32 29.54 68.60 2.03 43.34 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 5 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.55 -27.89 4.90 25.60 0.13 -27.77 16 8 H 0.04 2.15 7.82 -2.91 -0.02 2.12 16 9 C 0.31 14.31 0.69 -12.41 -0.01 14.30 16 10 O -0.54 -27.07 10.62 -148.98 -1.58 -28.65 16 11 C -0.06 -2.31 5.01 -19.82 -0.10 -2.41 16 12 C -0.16 -6.36 8.93 22.44 0.20 -6.16 16 13 C 0.07 2.38 11.19 84.63 0.95 3.32 16 14 N -0.51 -17.50 10.35 -195.53 -2.02 -19.53 16 15 C 0.08 2.66 10.74 84.92 0.91 3.57 16 16 C -0.14 -4.77 5.73 -19.91 -0.11 -4.89 16 17 C -0.06 -1.86 5.69 29.67 0.17 -1.69 16 18 C -0.08 -2.66 5.71 30.61 0.17 -2.48 16 19 C -0.11 -4.49 1.54 -52.39 -0.08 -4.57 16 20 C -0.15 -6.12 9.51 30.49 0.29 -5.83 16 21 C -0.17 -7.45 9.65 30.52 0.29 -7.15 16 22 H 0.25 13.17 8.31 -92.71 -0.77 12.40 16 23 H 0.35 17.24 8.76 -74.06 -0.65 16.59 16 24 H 0.13 5.08 7.57 -2.91 -0.02 5.05 16 25 H 0.17 4.74 8.06 -2.91 -0.02 4.71 16 26 H 0.18 4.24 8.05 -2.91 -0.02 4.21 16 27 H 0.10 2.25 8.10 -2.39 -0.02 2.23 16 28 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.08 2.32 8.12 -2.39 -0.02 2.30 16 31 H 0.08 3.48 6.74 -2.38 -0.02 3.46 16 32 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 33 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 34 H 0.09 4.45 5.36 -2.39 -0.01 4.44 16 Total: -1.00 -58.43 274.93 2.27 -56.15 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: 0.46 Total: 32.70 kcal Atomic # 6 Polarization: -41.86 SS G_CDS: 3.18 Total: -38.68 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: -1.81 Total: -64.87 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -1.58 Total: -28.65 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.34 kcal Total: -58.43 2.27 -56.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260520474.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.169 kcal (2) G-P(sol) polarization free energy of solvation -58.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds