Wall clock time and date at job start Mon Mar 30 2020 03:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30573 * 1 3 3 Si 1.86800 * 120.00078 * 2 1 4 4 H 1.48504 * 109.47069 * 269.99978 * 3 2 1 5 5 H 1.48499 * 109.46966 * 29.99980 * 3 2 1 6 6 H 1.48504 * 109.47158 * 150.00134 * 3 2 1 7 7 C 1.40406 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00500 * 179.97438 * 7 2 1 9 9 C 1.39787 * 119.99731 * 359.97438 * 7 2 1 10 10 N 1.32489 * 125.15596 * 180.02562 * 9 7 2 11 11 C 1.33772 * 108.82017 * 180.02562 * 10 9 7 12 12 C 1.41185 * 107.24520 * 359.97438 * 11 10 9 13 13 N 1.32108 * 120.21764 * 180.24074 * 12 11 10 14 14 C 1.32104 * 121.93080 * 359.57697 * 13 12 11 15 15 C 1.38186 * 121.66614 * 0.42894 * 14 13 12 16 16 C 1.39123 * 119.44718 * 359.79496 * 15 14 13 17 17 N 1.38585 * 121.06160 * 180.02562 * 16 15 14 18 18 C 1.46507 * 120.00097 * 359.96897 * 17 16 15 19 19 C 1.52992 * 117.50040 * 223.74777 * 18 17 16 20 20 C 1.52999 * 117.49856 * 155.08525 * 18 17 16 21 21 O 1.35124 * 125.16095 * 0.04620 * 9 7 2 22 22 H 0.96996 * 119.99559 * 359.97438 * 1 2 3 23 23 H 1.07991 * 119.16380 * 180.19770 * 14 13 12 24 24 H 1.07999 * 120.27205 * 179.76864 * 15 14 13 25 25 H 0.97003 * 120.00278 * 179.97438 * 17 16 15 26 26 H 1.09002 * 115.54533 * 9.42183 * 18 17 16 27 27 H 1.08992 * 117.50243 * 0.02562 * 19 18 17 28 28 H 1.09003 * 117.49601 * 145.01988 * 19 18 17 29 29 H 1.08996 * 117.50263 * 214.98040 * 20 18 17 30 30 H 1.09001 * 117.50124 * 0.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3057 0.0000 0.0000 3 14 2.2398 1.6177 0.0000 4 1 2.4873 2.0464 -1.4001 5 1 1.4372 2.6526 0.7000 6 1 3.5374 1.4401 0.7000 7 6 2.0078 -1.2159 -0.0005 8 1 3.0878 -1.2160 -0.0010 9 6 1.3088 -2.4265 -0.0005 10 7 1.8654 -3.6288 -0.0005 11 6 0.8977 -4.5524 -0.0011 12 6 -0.3361 -3.8659 -0.0009 13 7 -1.4721 -4.5402 0.0035 14 6 -1.5008 -5.8609 -0.0006 15 6 -0.3406 -6.6116 -0.0008 16 6 0.8918 -5.9661 -0.0010 17 7 2.0760 -6.6860 -0.0018 18 6 2.0429 -8.1507 -0.0017 19 6 3.0077 -8.8790 0.9361 20 6 3.2571 -8.8847 -0.5742 21 8 -0.0370 -2.5480 -0.0009 22 1 -0.4849 0.8400 0.0004 23 1 -2.4550 -6.3666 0.0000 24 1 -0.3903 -7.6905 -0.0004 25 1 2.9268 -6.2201 -0.0023 26 1 1.0623 -8.5987 -0.1620 27 1 3.6667 -8.2686 1.5533 28 1 2.6619 -9.8065 1.3925 29 1 3.0754 -9.8160 -1.1107 30 1 4.0808 -8.2780 -0.9505 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260868894.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:23 Heat of formation + Delta-G solvation = 65.795679 kcal Electronic energy + Delta-G solvation = -16777.342674 eV Core-core repulsion = 13960.568393 eV Total energy + Delta-G solvation = -2816.774281 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.38804 -38.44603 -37.07720 -34.05921 -33.89925 -32.45274 -29.48302 -28.73518 -26.33353 -23.13481 -22.37094 -22.15237 -20.87908 -20.23266 -18.25097 -17.46236 -16.49486 -15.97845 -15.40805 -15.19464 -14.72064 -14.42783 -13.79204 -13.24986 -12.70434 -12.65374 -12.39143 -11.85296 -11.71016 -11.55872 -11.39964 -11.36488 -11.16482 -10.57362 -10.47735 -10.40178 -9.68231 -9.38794 -9.11048 -8.11849 -7.82932 -7.19697 -6.91936 -4.90990 2.05417 2.25683 2.84784 2.89475 2.96308 3.64068 3.66951 3.76466 3.89414 3.95091 4.76556 4.84752 4.96172 4.99597 5.11587 5.33224 5.61164 5.61530 5.69663 5.87181 5.93780 6.05644 6.08538 6.37541 6.66473 6.71462 6.90886 7.14278 7.70303 7.74270 7.89290 8.12747 8.20774 8.33235 9.00376 9.48080 9.79964 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.032573 B = 0.005962 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.401667 B = 4694.944757 C = 5476.075907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.751 5.751 2 C 0.065 3.935 3 Si 0.939 3.061 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.406 4.406 8 H 0.121 0.879 9 C 0.375 3.625 10 N -0.616 5.616 11 C 0.002 3.998 12 C 0.169 3.831 13 N -0.486 5.486 14 C 0.096 3.904 15 C -0.253 4.253 16 C 0.236 3.764 17 N -0.703 5.703 18 C 0.098 3.902 19 C -0.204 4.204 20 C -0.198 4.198 21 O -0.183 6.183 22 H 0.294 0.706 23 H 0.149 0.851 24 H 0.124 0.876 25 H 0.406 0.594 26 H 0.129 0.871 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.959 -8.892 0.013 9.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.161 4.161 3 Si 0.761 3.239 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.441 4.441 8 H 0.139 0.861 9 C 0.193 3.807 10 N -0.352 5.352 11 C -0.123 4.123 12 C -0.014 4.014 13 N -0.206 5.206 14 C -0.067 4.067 15 C -0.281 4.281 16 C 0.125 3.875 17 N -0.332 5.332 18 C -0.010 4.010 19 C -0.243 4.243 20 C -0.237 4.237 21 O -0.075 6.075 22 H 0.106 0.894 23 H 0.166 0.834 24 H 0.142 0.858 25 H 0.242 0.758 26 H 0.146 0.854 27 H 0.113 0.887 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.648 -8.393 0.017 8.801 hybrid contribution 0.634 0.436 0.014 0.769 sum 3.282 -7.957 0.031 8.607 Atomic orbital electron populations 1.69683 1.07841 1.31088 1.28951 1.26315 0.95196 1.02621 0.91984 0.85784 0.80108 0.78188 0.79802 1.18697 1.19571 1.17807 1.18696 0.95249 0.85426 1.44684 0.86122 1.22196 0.75321 0.93762 0.89408 1.70789 1.29470 0.96954 1.38016 1.20182 0.92594 0.93280 1.06264 1.20481 0.90652 0.84574 1.05705 1.65973 1.27730 1.08723 1.18157 1.21733 0.97030 0.86886 1.01064 1.21039 0.91388 0.99671 1.15972 1.16995 0.86657 0.86677 0.97190 1.43532 1.06159 1.02550 1.80910 1.21452 0.95663 0.81162 1.02719 1.23468 1.04858 1.02997 0.92988 1.23379 1.01202 1.02760 0.96349 1.85035 1.26593 1.19620 1.76259 0.89420 0.83368 0.85775 0.75793 0.85371 0.88742 0.88475 0.88327 0.88726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.17 11.93 55.57 0.66 -18.50 16 2 C 0.07 1.56 5.50 -17.27 -0.10 1.46 16 3 Si 0.94 17.23 29.56 -169.99 -5.03 12.21 16 4 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 5 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 6 H -0.25 -4.55 7.11 56.52 0.40 -4.15 16 7 C -0.41 -10.54 9.45 -38.19 -0.36 -10.90 16 8 H 0.12 2.90 7.85 -52.49 -0.41 2.49 16 9 C 0.38 10.63 7.60 -16.69 -0.13 10.50 16 10 N -0.62 -16.83 11.34 -10.92 -0.12 -16.96 16 11 C 0.00 0.06 7.14 -84.71 -0.61 -0.54 16 12 C 0.17 4.65 8.60 -16.31 -0.14 4.51 16 13 N -0.49 -12.03 10.37 -12.84 -0.13 -12.16 16 14 C 0.10 1.90 11.14 -17.45 -0.19 1.71 16 15 C -0.25 -4.70 9.37 -39.27 -0.37 -5.07 16 16 C 0.24 5.01 6.74 -83.29 -0.56 4.45 16 17 N -0.70 -12.42 5.71 -51.73 -0.30 -12.71 16 18 C 0.10 1.30 6.33 -67.93 -0.43 0.87 16 19 C -0.20 -2.28 10.46 -26.70 -0.28 -2.56 16 20 C -0.20 -2.17 10.46 -26.69 -0.28 -2.45 16 21 O -0.18 -5.39 9.00 1.04 0.01 -5.38 16 22 H 0.29 6.64 8.29 -40.82 -0.34 6.30 16 23 H 0.15 2.29 8.06 -52.49 -0.42 1.87 16 24 H 0.12 1.81 6.01 -52.49 -0.32 1.49 16 25 H 0.41 7.40 8.86 -40.82 -0.36 7.04 16 26 H 0.13 1.54 5.97 -51.93 -0.31 1.23 16 27 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 269.64 15.07 4.06 4.06 Total: -1.00 -30.71 269.64 -6.93 -37.64 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -2.65 Total: 9.84 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -3.44 Total: 1.97 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: 0.11 Total: -60.34 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: 0.01 Total: -5.38 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.03 Total: 12.21 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.71 -6.93 -37.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260868894.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.433 kcal (2) G-P(sol) polarization free energy of solvation -30.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds