Wall clock time and date at job start Mon Mar 30 2020 03:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35336 * 116.99856 * 2 1 4 4 N 1.31522 * 119.85487 * 0.02562 * 3 2 1 5 5 C 1.34155 * 119.86844 * 179.97438 * 4 3 2 6 6 C 1.39926 * 121.07215 * 179.97438 * 5 4 3 7 7 C 1.38173 * 119.52833 * 180.02562 * 6 5 4 8 8 N 1.39080 * 119.36029 * 180.02562 * 7 6 5 9 9 C 1.40100 * 121.28452 * 359.97438 * 7 6 5 10 10 C 1.35746 * 121.45544 * 0.02562 * 9 7 6 11 11 C 1.41120 * 119.79820 * 359.97438 * 10 9 7 12 12 N 1.33057 * 121.05527 * 179.97438 * 11 10 9 13 13 C 1.33404 * 119.68924 * 180.02562 * 12 11 10 14 14 C 1.40695 * 119.89120 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99487 * 180.02562 * 14 13 12 16 16 C 1.40261 * 120.00505 * 0.02562 * 14 13 12 17 17 N 1.30631 * 119.99742 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00138 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47291 * 59.99728 * 18 16 14 20 20 H 1.48505 * 109.46841 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47070 * 299.99739 * 18 16 14 22 22 H 1.09008 * 109.47572 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47360 * 299.99885 * 1 2 3 24 24 H 1.08997 * 109.47724 * 60.00303 * 1 2 3 25 25 H 1.07998 * 120.23742 * 0.02562 * 6 5 4 26 26 H 0.96993 * 119.99895 * 0.02562 * 8 7 6 27 27 H 0.96997 * 119.99819 * 179.97438 * 8 7 6 28 28 H 1.07992 * 119.27157 * 179.97438 * 9 7 6 29 29 H 1.08002 * 120.09910 * 179.97438 * 10 9 7 30 30 H 0.97008 * 119.99914 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2059 0.0000 4 7 1.3242 2.3071 0.0005 5 6 1.9330 3.5026 0.0010 6 6 1.1926 4.6899 0.0010 7 6 1.8526 5.9039 0.0011 8 7 1.1133 7.0819 0.0016 9 6 3.2519 5.9712 0.0016 10 6 4.0152 4.8487 0.0016 11 6 3.3968 3.5802 0.0016 12 7 4.1205 2.4637 0.0011 13 6 3.5075 1.2788 0.0006 14 6 4.2687 0.0956 -0.0005 15 1 3.7741 -0.8645 -0.0013 16 6 5.6697 0.1628 -0.0005 17 7 6.2678 1.3241 0.0000 18 14 6.6802 -1.4083 -0.0026 19 1 6.3591 -2.2018 -1.2161 20 1 8.1255 -1.0672 -0.0029 21 1 6.3593 -2.2049 1.2089 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.1131 4.6578 0.0010 26 1 0.1440 7.0462 0.0024 27 1 1.5670 7.9392 0.0020 28 1 3.7341 6.9376 0.0011 29 1 5.0924 4.9261 0.0016 30 1 7.2368 1.3706 -0.0004 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261039091.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:11 Heat of formation + Delta-G solvation = 22.218719 kcal Electronic energy + Delta-G solvation = -17027.184227 eV Core-core repulsion = 14208.520308 eV Total energy + Delta-G solvation = -2818.663920 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.42144 -37.86212 -36.17652 -34.15841 -32.91005 -31.94082 -29.10188 -28.65647 -26.64703 -25.37470 -22.66108 -21.95000 -20.80578 -18.49808 -17.51964 -16.86331 -16.20039 -15.82844 -15.08861 -14.88603 -14.79919 -13.77687 -13.18290 -13.07950 -12.85925 -12.76569 -11.88419 -11.76588 -11.68488 -11.32577 -11.27039 -10.76244 -10.66141 -10.62720 -10.24310 -10.00179 -9.63943 -9.44197 -8.64050 -7.54530 -7.24446 -6.77860 -6.55424 -4.50181 1.69997 2.17862 3.02246 3.02378 3.04819 3.53770 3.81982 3.99459 4.00338 4.50973 4.81751 5.49688 5.64907 5.70849 5.76215 5.80391 5.88320 5.96241 6.11608 6.29910 6.44617 6.59260 6.88249 6.96731 7.07688 7.28704 7.46498 7.60042 7.92741 8.02334 8.22096 8.35158 8.41054 8.66731 8.96831 9.86812 10.09153 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.023979 B = 0.008128 C = 0.006091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.418657 B = 3443.943754 C = 4596.219195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.301 6.301 3 C 0.265 3.735 4 N -0.523 5.523 5 C 0.036 3.964 6 C -0.153 4.153 7 C 0.150 3.850 8 N -0.890 5.890 9 C -0.160 4.160 10 C -0.083 4.083 11 C 0.092 3.908 12 N -0.467 5.467 13 C 0.217 3.783 14 C -0.376 4.376 15 H 0.098 0.902 16 C 0.057 3.943 17 N -0.692 5.692 18 Si 0.918 3.082 19 H -0.262 1.262 20 H -0.275 1.275 21 H -0.262 1.262 22 H 0.084 0.916 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.107 0.893 26 H 0.388 0.612 27 H 0.388 0.612 28 H 0.107 0.893 29 H 0.122 0.878 30 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.184 2.674 0.001 4.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.204 6.204 3 C 0.059 3.941 4 N -0.252 5.252 5 C -0.085 4.085 6 C -0.178 4.178 7 C 0.047 3.953 8 N -0.432 5.432 9 C -0.183 4.183 10 C -0.104 4.104 11 C -0.039 4.039 12 N -0.188 5.188 13 C 0.080 3.920 14 C -0.411 4.411 15 H 0.116 0.884 16 C -0.171 4.171 17 N -0.314 5.314 18 Si 0.741 3.259 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.186 1.186 22 H 0.102 0.898 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.125 0.875 26 H 0.215 0.785 27 H 0.214 0.786 28 H 0.125 0.875 29 H 0.140 0.860 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.842 2.678 0.000 4.684 hybrid contribution -0.192 -0.096 0.000 0.214 sum -4.034 2.583 0.001 4.790 Atomic orbital electron populations 1.22664 0.79882 1.01429 1.01551 1.86180 1.20628 1.25795 1.87822 1.23037 0.91429 0.84119 0.95553 1.67809 1.38711 0.97959 1.20744 1.19484 0.91132 0.89861 1.08023 1.19784 0.97672 0.89331 1.11022 1.17220 0.90556 0.86135 1.01386 1.42040 1.07760 1.05024 1.88355 1.20041 0.91577 0.97960 1.08697 1.20308 0.99030 0.89920 1.01169 1.20743 0.89499 0.94628 0.99050 1.69998 1.30781 0.94538 1.23519 1.19926 0.83535 0.93855 0.94709 1.19686 0.90881 0.92959 1.37539 0.88406 1.26185 0.98585 0.97915 0.94377 1.70072 1.10776 1.25380 1.25125 0.86203 0.78246 0.81245 0.80231 1.18614 1.20014 1.18609 0.89786 0.93287 0.93279 0.87458 0.78510 0.78561 0.87514 0.86048 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 10.38 101.05 1.05 1.76 16 2 O -0.30 -6.77 9.69 -17.70 -0.17 -6.94 16 3 C 0.26 6.76 7.67 -14.31 -0.11 6.65 16 4 N -0.52 -13.10 9.31 -8.05 -0.07 -13.17 16 5 C 0.04 0.89 6.72 -82.85 -0.56 0.33 16 6 C -0.15 -3.26 9.83 -38.97 -0.38 -3.64 16 7 C 0.15 2.81 6.73 -83.90 -0.56 2.24 16 8 N -0.89 -12.39 9.05 32.39 0.29 -12.09 16 9 C -0.16 -3.06 9.73 -39.78 -0.39 -3.45 16 10 C -0.08 -1.86 9.99 -39.38 -0.39 -2.26 16 11 C 0.09 2.38 6.74 -82.88 -0.56 1.83 16 12 N -0.47 -13.07 7.95 -6.33 -0.05 -13.12 16 13 C 0.22 5.95 6.69 -82.89 -0.55 5.40 16 14 C -0.38 -9.72 8.98 -37.89 -0.34 -10.06 16 15 H 0.10 2.36 7.37 -52.49 -0.39 1.98 16 16 C 0.06 1.38 5.50 -17.30 -0.10 1.29 16 17 N -0.69 -17.66 11.46 55.56 0.64 -17.02 16 18 Si 0.92 17.66 29.56 -169.99 -5.03 12.64 16 19 H -0.26 -4.97 7.11 56.52 0.40 -4.56 16 20 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 21 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 22 H 0.08 1.14 8.14 -51.92 -0.42 0.71 16 23 H 0.05 0.84 8.10 -51.93 -0.42 0.42 16 24 H 0.05 0.84 8.10 -51.93 -0.42 0.42 16 25 H 0.11 2.12 8.06 -52.49 -0.42 1.69 16 26 H 0.39 4.70 8.81 -40.82 -0.36 4.34 16 27 H 0.39 4.44 8.82 -40.82 -0.36 4.08 16 28 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 29 H 0.12 2.62 8.06 -52.49 -0.42 2.19 16 30 H 0.28 6.39 8.29 -40.82 -0.34 6.05 16 LS Contribution 269.09 15.07 4.06 4.06 Total: -1.00 -30.29 269.09 -6.00 -36.29 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -2.77 Total: 9.28 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -2.89 Total: 0.08 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: 0.80 Total: -55.41 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.17 Total: -6.94 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.64 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.29 -6.00 -36.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261039091.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.510 kcal (2) G-P(sol) polarization free energy of solvation -30.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds