Wall clock time and date at job start Mon Mar 30 2020 03:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21540 * 120.00119 * 0.02562 * 13 12 2 15 15 C 1.47888 * 119.99866 * 180.02562 * 13 12 2 16 16 C 1.40001 * 120.44949 * 180.02562 * 15 13 12 17 17 C 1.38264 * 118.38130 * 179.97438 * 16 15 13 18 18 C 1.39518 * 119.18771 * 0.02562 * 17 16 15 19 19 C 1.43202 * 119.58875 * 179.97438 * 18 17 16 20 20 N 8.96341 * 108.81293 * 113.44435 * 2 1 3 21 21 N 1.32841 * 120.83162 * 0.02562 * 18 17 16 22 22 C 1.31434 * 121.77092 * 359.65753 * 21 18 17 23 23 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 28 28 H 1.08007 * 120.81169 * 0.02562 * 16 15 13 29 29 H 1.07995 * 120.40838 * 180.02562 * 17 16 15 30 30 H 1.08007 * 119.63482 * 180.31132 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8575 1.1611 2.4118 15 6 2.6405 -0.7150 3.5645 16 6 2.7773 -0.0259 4.7755 17 6 3.2420 -0.7195 5.8776 18 6 3.5570 -2.0723 5.7469 19 6 4.0395 -2.7989 6.8827 20 7 4.4205 -3.3756 7.7841 21 7 3.4160 -2.6948 4.5818 22 6 2.9716 -2.0713 3.5135 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7088 1.1611 -3.4845 27 1 2.2490 -1.6316 1.1527 28 1 2.5252 1.0219 4.8472 29 1 3.3596 -0.2202 6.8279 30 1 2.8657 -2.6124 2.5848 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359931833.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:20 Heat of formation + Delta-G solvation = 29.175915 kcal Electronic energy + Delta-G solvation = -16264.859993 eV Core-core repulsion = 13446.497760 eV Total energy + Delta-G solvation = -2818.362233 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 245.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.77292 -38.75855 -36.75137 -35.03726 -32.85076 -32.82754 -31.79591 -28.99502 -25.64979 -25.29317 -23.94105 -21.66328 -20.01259 -19.56322 -18.09747 -16.96999 -16.02735 -15.24902 -15.18733 -15.08158 -14.60010 -14.23841 -14.03058 -13.48138 -13.20035 -13.04327 -12.95752 -12.68797 -12.47284 -11.81445 -11.16907 -11.05496 -10.87566 -10.41136 -10.32247 -10.22256 -10.13502 -9.43704 -9.35937 -9.15486 -8.64513 -8.11669 -6.20358 -4.30386 0.03731 0.89586 2.22891 2.36417 3.19495 3.20836 3.27806 3.28856 3.30220 3.71335 3.84471 4.27957 4.29062 4.52554 4.66029 4.83130 5.08656 5.13103 5.24197 5.64067 5.87149 6.11502 6.71965 6.84128 7.02680 7.04208 7.24619 7.37948 7.40715 7.58712 7.79152 8.04300 8.43379 8.63168 8.86445 9.37245 10.85598 Molecular weight = 245.09amu Principal moments of inertia in cm(-1) A = 0.040541 B = 0.004628 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.500290 B = 6048.261861 C = 6550.996934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.052 0.948 4 C -0.538 4.538 5 H 0.063 0.937 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.285 1.285 12 N -0.695 5.695 13 C 0.543 3.457 14 O -0.541 6.541 15 C -0.142 4.142 16 C -0.021 4.021 17 C -0.125 4.125 18 C 0.196 3.804 19 C 0.271 3.729 20 N -0.392 5.392 21 N -0.453 5.453 22 C 0.139 3.861 23 H 0.028 0.972 24 H 0.016 0.984 25 H 0.092 0.908 26 H 0.265 0.735 27 H 0.390 0.610 28 H 0.160 0.840 29 H 0.151 0.849 30 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.642 -3.262 11.545 12.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.070 0.930 4 C -0.576 4.576 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.197 1.197 11 H -0.210 1.210 12 N -0.343 5.343 13 C 0.326 3.674 14 O -0.420 6.420 15 C -0.149 4.149 16 C -0.048 4.048 17 C -0.147 4.147 18 C 0.058 3.942 19 C -0.047 4.047 20 N -0.068 5.068 21 N -0.163 5.163 22 C -0.022 4.022 23 H 0.047 0.953 24 H 0.035 0.965 25 H 0.111 0.889 26 H 0.075 0.925 27 H 0.223 0.777 28 H 0.178 0.822 29 H 0.169 0.831 30 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.132 -4.068 12.705 13.704 hybrid contribution 0.045 0.123 -1.249 1.256 sum 3.177 -3.946 11.456 12.527 Atomic orbital electron populations 1.22094 0.98107 0.99368 1.01128 1.18857 0.91242 0.94095 0.79553 0.92974 1.21190 1.32780 1.13450 0.90187 0.91885 1.24881 0.94669 0.94926 0.99112 1.69894 1.35595 1.22400 1.24062 0.86427 0.78632 0.79875 0.82059 1.20508 1.19749 1.21046 1.46565 1.63769 1.13620 1.10322 1.17953 0.79512 0.86865 0.83056 1.90762 1.51181 1.15312 1.84772 1.21689 1.00978 0.95661 0.96526 1.21774 0.91557 1.01464 0.89974 1.21996 0.98984 0.93019 1.00725 1.16476 0.99429 0.89893 0.88371 1.25000 0.93973 0.93182 0.92529 1.81248 1.07631 1.07073 1.10881 1.67546 1.11908 1.38793 0.98079 1.23071 0.91847 0.90940 0.96335 0.95254 0.96515 0.88927 0.92452 0.77667 0.82211 0.83122 0.80863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.26 37.16 0.34 -3.11 16 2 C 0.26 6.23 2.56 -69.09 -0.18 6.05 16 3 H 0.05 1.43 7.58 -51.92 -0.39 1.03 16 4 C -0.54 -13.39 8.73 -34.44 -0.30 -13.69 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -23.80 11.32 55.43 0.63 -23.17 16 8 Si 0.90 19.79 29.54 -169.99 -5.02 14.77 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 12 N -0.70 -12.93 5.02 -55.87 -0.28 -13.21 16 13 C 0.54 9.59 7.75 -12.31 -0.10 9.49 16 14 O -0.54 -11.56 16.07 5.33 0.09 -11.47 16 15 C -0.14 -1.86 5.89 -104.74 -0.62 -2.47 16 16 C -0.02 -0.23 9.70 -38.91 -0.38 -0.60 16 17 C -0.12 -1.09 9.78 -39.09 -0.38 -1.47 16 18 C 0.20 2.09 6.58 -85.03 -0.56 1.53 16 19 C 0.27 3.06 15.52 -22.47 -0.35 2.71 16 20 N -0.39 -5.05 18.54 41.84 0.78 -4.27 16 21 N -0.45 -5.41 10.26 -10.85 -0.11 -5.53 16 22 C 0.14 1.61 10.70 -17.17 -0.18 1.42 16 23 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 26 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 27 H 0.39 6.02 6.59 -40.82 -0.27 5.75 16 28 H 0.16 1.60 7.73 -52.48 -0.41 1.19 16 29 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 30 H 0.17 1.69 6.41 -52.48 -0.34 1.35 16 LS Contribution 278.61 15.07 4.20 4.20 Total: -1.00 -29.68 278.61 -5.05 -34.72 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -2.53 Total: 2.47 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -2.79 Total: 1.50 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 1.01 Total: -46.18 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.68 -5.05 -34.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359931833.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.898 kcal (2) G-P(sol) polarization free energy of solvation -29.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds